Wall clock time and date at job start Tue Mar 31 2020 23:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00306 * 2 1 4 4 C 1.52999 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47120 * 64.99755 * 4 3 2 6 6 C 1.46764 * 124.35106 * 269.99903 * 5 4 3 7 7 C 1.54484 * 105.47181 * 197.04087 * 6 5 4 8 8 H 1.08999 * 110.97040 * 92.74146 * 7 6 5 9 9 C 1.50705 * 110.96336 * 216.46552 * 7 6 5 10 10 O 1.21282 * 120.00226 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99763 * 180.02562 * 9 7 6 12 12 C 1.47427 * 125.64772 * 0.02562 * 11 9 7 13 13 C 1.54905 * 104.83236 * 204.09274 * 12 11 9 14 14 C 1.55151 * 101.58268 * 322.99123 * 13 12 11 15 15 H 1.09000 * 110.72458 * 277.13797 * 14 13 12 16 16 N 1.46504 * 110.71919 * 153.86429 * 14 13 12 17 17 C 1.36942 * 119.99718 * 86.45584 * 16 14 13 18 18 H 1.07992 * 119.99930 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99762 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00052 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99881 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47392 * 89.99891 * 21 19 17 23 23 H 1.48505 * 109.46947 * 209.99934 * 21 19 17 24 24 H 1.48501 * 109.47468 * 329.99888 * 21 19 17 25 25 C 1.47017 * 125.65245 * 179.71537 * 11 9 7 26 26 H 1.08996 * 109.88205 * 298.39806 * 25 11 9 27 27 C 1.53002 * 109.87854 * 59.55887 * 25 11 9 28 28 C 1.54624 * 101.76286 * 334.58202 * 7 6 5 29 29 C 1.34424 * 124.34587 * 90.02581 * 5 4 3 30 30 O 1.21279 * 124.94294 * 359.30176 * 29 5 4 31 31 H 1.09006 * 109.47363 * 299.99886 * 1 2 3 32 32 H 1.08998 * 109.47346 * 60.00212 * 1 2 3 33 33 H 1.09000 * 109.47238 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46798 * 59.99668 * 3 2 1 35 35 H 1.09000 * 109.46630 * 300.00038 * 3 2 1 36 36 H 1.09002 * 109.46766 * 304.99718 * 4 3 2 37 37 H 1.09005 * 109.46822 * 185.00247 * 4 3 2 38 38 H 1.09002 * 110.24057 * 316.03952 * 6 5 4 39 39 H 1.08999 * 110.24100 * 77.95221 * 6 5 4 40 40 H 1.08999 * 110.36964 * 322.93637 * 12 11 9 41 41 H 1.09004 * 110.36719 * 85.25308 * 12 11 9 42 42 H 1.09003 * 111.00139 * 81.06912 * 13 12 11 43 43 H 1.09008 * 111.00312 * 204.87707 * 13 12 11 44 44 H 0.96997 * 119.99941 * 266.45259 * 16 14 13 45 45 H 0.96998 * 120.00071 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.47302 * 58.54781 * 27 25 11 47 47 H 1.09004 * 109.47079 * 178.55386 * 27 25 11 48 48 H 1.09003 * 109.47375 * 298.54865 * 27 25 11 49 49 H 1.09000 * 110.48926 * 266.12016 * 28 7 6 50 50 H 1.09001 * 110.48194 * 143.48372 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.1380 -0.8811 -1.4485 7 6 5.0090 -1.0300 -2.7156 8 1 6.0655 -1.0998 -2.4568 9 6 4.5763 -2.2218 -3.5303 10 8 3.6522 -2.9109 -3.1533 11 7 5.2164 -2.5219 -4.6778 12 6 6.3503 -1.7735 -5.2502 13 6 6.3100 -2.0905 -6.7659 14 6 5.8731 -3.5792 -6.7613 15 1 6.7306 -4.2324 -6.5999 16 7 5.1866 -3.9217 -8.0094 17 6 5.9102 -4.3184 -9.1022 18 1 6.9869 -4.3784 -9.0442 19 6 5.2597 -4.6435 -10.2846 20 7 5.9550 -5.0252 -11.3349 21 14 3.3973 -4.5391 -10.3852 22 1 3.0011 -3.1793 -10.8316 23 1 2.8969 -5.5445 -11.3569 24 1 2.8132 -4.8105 -9.0471 25 6 4.9036 -3.6534 -5.5628 26 1 5.0439 -4.5925 -5.0276 27 6 3.4599 -3.5436 -6.0572 28 6 4.7072 0.2898 -3.4625 29 6 4.2832 1.2461 -2.3697 30 8 4.2243 2.4518 -2.4859 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8514 0.5682 0.8410 37 1 3.9785 2.1765 0.0890 38 1 4.6426 -1.3236 -0.5897 39 1 3.1669 -1.3527 -1.5990 40 1 6.2224 -0.7041 -5.0826 41 1 7.2893 -2.1166 -4.8157 42 1 5.5739 -1.4688 -7.2756 43 1 7.2959 -1.9734 -7.2159 44 1 4.2195 -3.8676 -8.0616 45 1 5.5005 -5.2520 -12.1612 46 1 3.3275 -2.5993 -6.5853 47 1 3.2432 -4.3712 -6.7327 48 1 2.7803 -3.5821 -5.2059 49 1 3.8984 0.1464 -4.1790 50 1 5.6022 0.6570 -3.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074675735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:47 Heat of formation + Delta-G solvation = -79.927476 kcal Electronic energy + Delta-G solvation = -30811.225722 eV Core-core repulsion = 26646.683115 eV Total energy + Delta-G solvation = -4164.542607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15831 -39.85189 -38.17067 -37.81278 -36.33508 -34.48146 -33.67129 -31.78262 -30.90774 -29.98042 -29.05613 -27.95212 -26.66517 -25.53665 -24.37005 -23.28348 -22.89530 -22.09036 -19.95264 -19.43481 -18.81369 -18.05165 -17.61395 -17.24516 -16.81752 -16.27451 -15.99630 -15.75728 -15.55497 -15.21898 -14.90621 -14.69798 -14.21132 -14.15085 -13.90198 -13.56651 -13.45774 -13.24108 -12.87000 -12.77288 -12.68698 -12.47546 -12.31801 -12.23360 -12.02008 -11.93253 -11.64026 -11.54932 -11.48967 -11.40701 -11.21581 -10.93230 -10.60796 -10.39083 -10.26268 -10.10536 -10.01889 -9.73308 -9.56935 -9.01417 -8.99980 -8.58464 -7.37227 -5.84870 -3.21909 2.28775 2.50554 2.60287 2.95917 3.32003 3.34914 3.40297 3.41284 3.95246 4.07709 4.39244 4.51918 4.56913 4.62359 4.72825 4.78201 4.85400 4.87304 5.01776 5.03241 5.07742 5.10558 5.11653 5.20181 5.28007 5.36106 5.36265 5.37659 5.44080 5.49555 5.52158 5.62472 5.75019 5.80767 5.87341 5.97904 6.12554 6.18520 6.32586 6.46202 6.49816 6.53133 6.69888 6.79299 6.83228 7.56306 7.86797 7.90102 8.12126 8.33895 9.11223 9.83453 10.01880 11.32971 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002598 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.875127 B =10774.541013 C =11339.187293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.130 3.870 5 N -0.612 5.612 6 C 0.123 3.877 7 C -0.121 4.121 8 H 0.116 0.884 9 C 0.539 3.461 10 O -0.535 6.535 11 N -0.605 5.605 12 C 0.091 3.909 13 C -0.152 4.152 14 C 0.179 3.821 15 H 0.072 0.928 16 N -0.741 5.741 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.127 3.873 26 H 0.077 0.923 27 C -0.165 4.165 28 C -0.144 4.144 29 C 0.521 3.479 30 O -0.533 6.533 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.368 0.632 45 H 0.261 0.739 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 11.765 24.852 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.037 4.037 4 C 0.008 3.992 5 N -0.346 5.346 6 C 0.000 4.000 7 C -0.143 4.143 8 H 0.134 0.866 9 C 0.326 3.674 10 O -0.412 6.412 11 N -0.338 5.338 12 C -0.032 4.032 13 C -0.194 4.194 14 C 0.068 3.932 15 H 0.090 0.910 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.709 3.291 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.202 1.202 25 C 0.024 3.976 26 H 0.095 0.905 27 C -0.223 4.223 28 C -0.184 4.184 29 C 0.309 3.691 30 O -0.410 6.410 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.204 0.796 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.128 0.872 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.263 11.811 24.940 27.923 hybrid contribution -1.478 0.280 -0.287 1.531 sum -5.741 12.091 24.653 28.052 Atomic orbital electron populations 1.22737 0.80883 1.02963 0.99803 1.87910 1.19827 1.27267 1.95395 1.23042 0.94284 0.85487 1.00888 1.21432 0.92272 0.99755 0.85717 1.48212 1.66392 1.07911 1.12106 1.21996 1.01642 0.80127 0.96236 1.22213 1.02507 0.93596 0.95953 0.86640 1.19613 0.82225 0.85425 0.80132 1.90707 1.28889 1.51854 1.69729 1.48539 1.33642 1.29858 1.21808 1.22549 0.88849 0.96210 0.95571 1.23512 1.03072 1.00426 0.92342 1.21142 0.93476 0.93519 0.85060 0.91032 1.42968 1.05376 1.81511 1.08735 1.19044 0.92751 1.37780 0.88251 0.89024 1.24652 0.97150 1.01047 0.95880 1.69687 1.34322 1.51343 1.02347 0.86666 0.87316 0.77773 0.77378 1.20953 1.21555 1.20184 1.21851 0.96317 0.88489 0.90974 0.90537 1.22092 0.96027 1.02500 1.01673 1.22372 1.05013 0.93150 0.97865 1.20796 0.76291 0.88070 0.83973 1.90730 1.54418 1.13612 1.82260 0.94194 0.94136 0.89431 0.92197 0.92824 0.89227 0.88325 0.89906 0.88268 0.90882 0.91208 0.90663 0.89991 0.79585 0.92926 0.92533 0.90850 0.91568 0.87242 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.72 10.53 -35.23 -0.37 -4.09 16 3 C 0.04 0.33 6.28 37.16 0.23 0.56 16 4 C 0.13 0.99 6.32 -4.04 -0.03 0.96 16 5 N -0.61 -5.85 2.88 -172.41 -0.50 -6.35 16 6 C 0.12 1.14 6.59 -3.12 -0.02 1.12 16 7 C -0.12 -1.10 2.89 -90.14 -0.26 -1.36 16 8 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 9 C 0.54 6.82 6.89 -10.98 -0.08 6.74 16 10 O -0.53 -8.50 14.39 5.56 0.08 -8.42 16 11 N -0.60 -7.79 3.08 -163.02 -0.50 -8.29 16 12 C 0.09 0.99 6.64 -2.53 -0.02 0.97 16 13 C -0.15 -2.20 6.77 -24.59 -0.17 -2.37 16 14 C 0.18 3.10 3.45 -66.09 -0.23 2.87 16 15 H 0.07 1.26 8.12 -51.93 -0.42 0.83 16 16 N -0.74 -16.31 4.82 -51.65 -0.25 -16.56 16 17 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -28.31 13.97 55.49 0.78 -27.53 16 21 Si 0.88 21.46 27.74 -169.99 -4.71 16.75 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.31 6.50 56.52 0.37 -5.95 16 25 C 0.13 1.98 3.49 -66.95 -0.23 1.74 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 C -0.16 -2.73 7.93 37.16 0.29 -2.44 16 28 C -0.14 -1.36 5.37 -26.74 -0.14 -1.50 16 29 C 0.52 5.94 8.02 -10.86 -0.09 5.85 16 30 O -0.53 -7.85 17.60 5.56 0.10 -7.76 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.70 7.93 -51.93 -0.41 0.29 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.17 6.96 -51.93 -0.36 0.80 16 40 H 0.07 0.64 5.42 -51.93 -0.28 0.36 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 44 H 0.37 8.07 2.80 -40.82 -0.11 7.95 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 47 H 0.07 1.31 6.72 -51.93 -0.35 0.97 16 48 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 49 H 0.11 1.14 7.89 -51.93 -0.41 0.73 16 50 H 0.11 0.88 6.78 -51.93 -0.35 0.53 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -33.99 394.82 -7.44 -41.42 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.14 Total: 6.97 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 0.13 Total: 7.91 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.47 Total: -58.73 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.19 Total: -20.27 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.99 -7.44 -41.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074675735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.504 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds