Wall clock time and date at job start Tue Mar 31 2020 23:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00306 * 2 1 4 4 C 1.52999 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47120 * 64.99755 * 4 3 2 6 6 C 1.46764 * 124.35106 * 269.99903 * 5 4 3 7 7 C 1.54484 * 105.47181 * 197.04087 * 6 5 4 8 8 H 1.08999 * 110.97040 * 92.74146 * 7 6 5 9 9 C 1.50705 * 110.96336 * 216.46552 * 7 6 5 10 10 O 1.21282 * 120.00226 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99763 * 180.02562 * 9 7 6 12 12 C 1.47427 * 125.64772 * 0.02562 * 11 9 7 13 13 C 1.54905 * 104.83236 * 204.09274 * 12 11 9 14 14 C 1.55151 * 101.58268 * 322.99123 * 13 12 11 15 15 H 1.09000 * 110.72458 * 277.13797 * 14 13 12 16 16 N 1.46504 * 110.71919 * 153.86429 * 14 13 12 17 17 C 1.36942 * 119.99718 * 86.45584 * 16 14 13 18 18 H 1.07992 * 119.99930 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99762 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00052 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99881 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47392 * 89.99891 * 21 19 17 23 23 H 1.48505 * 109.46947 * 209.99934 * 21 19 17 24 24 H 1.48501 * 109.47468 * 329.99888 * 21 19 17 25 25 C 1.47017 * 125.65245 * 179.71537 * 11 9 7 26 26 H 1.08996 * 109.88205 * 298.39806 * 25 11 9 27 27 C 1.53002 * 109.87854 * 59.55887 * 25 11 9 28 28 C 1.54624 * 101.76286 * 334.58202 * 7 6 5 29 29 C 1.34424 * 124.34587 * 90.02581 * 5 4 3 30 30 O 1.21279 * 124.94294 * 359.30176 * 29 5 4 31 31 H 1.09006 * 109.47363 * 299.99886 * 1 2 3 32 32 H 1.08998 * 109.47346 * 60.00212 * 1 2 3 33 33 H 1.09000 * 109.47238 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46798 * 59.99668 * 3 2 1 35 35 H 1.09000 * 109.46630 * 300.00038 * 3 2 1 36 36 H 1.09002 * 109.46766 * 304.99718 * 4 3 2 37 37 H 1.09005 * 109.46822 * 185.00247 * 4 3 2 38 38 H 1.09002 * 110.24057 * 316.03952 * 6 5 4 39 39 H 1.08999 * 110.24100 * 77.95221 * 6 5 4 40 40 H 1.08999 * 110.36964 * 322.93637 * 12 11 9 41 41 H 1.09004 * 110.36719 * 85.25308 * 12 11 9 42 42 H 1.09003 * 111.00139 * 81.06912 * 13 12 11 43 43 H 1.09008 * 111.00312 * 204.87707 * 13 12 11 44 44 H 0.96997 * 119.99941 * 266.45259 * 16 14 13 45 45 H 0.96998 * 120.00071 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.47302 * 58.54781 * 27 25 11 47 47 H 1.09004 * 109.47079 * 178.55386 * 27 25 11 48 48 H 1.09003 * 109.47375 * 298.54865 * 27 25 11 49 49 H 1.09000 * 110.48926 * 266.12016 * 28 7 6 50 50 H 1.09001 * 110.48194 * 143.48372 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.1380 -0.8811 -1.4485 7 6 5.0090 -1.0300 -2.7156 8 1 6.0655 -1.0998 -2.4568 9 6 4.5763 -2.2218 -3.5303 10 8 3.6522 -2.9109 -3.1533 11 7 5.2164 -2.5219 -4.6778 12 6 6.3503 -1.7735 -5.2502 13 6 6.3100 -2.0905 -6.7659 14 6 5.8731 -3.5792 -6.7613 15 1 6.7306 -4.2324 -6.5999 16 7 5.1866 -3.9217 -8.0094 17 6 5.9102 -4.3184 -9.1022 18 1 6.9869 -4.3784 -9.0442 19 6 5.2597 -4.6435 -10.2846 20 7 5.9550 -5.0252 -11.3349 21 14 3.3973 -4.5391 -10.3852 22 1 3.0011 -3.1793 -10.8316 23 1 2.8969 -5.5445 -11.3569 24 1 2.8132 -4.8105 -9.0471 25 6 4.9036 -3.6534 -5.5628 26 1 5.0439 -4.5925 -5.0276 27 6 3.4599 -3.5436 -6.0572 28 6 4.7072 0.2898 -3.4625 29 6 4.2832 1.2461 -2.3697 30 8 4.2243 2.4518 -2.4859 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8514 0.5682 0.8410 37 1 3.9785 2.1765 0.0890 38 1 4.6426 -1.3236 -0.5897 39 1 3.1669 -1.3527 -1.5990 40 1 6.2224 -0.7041 -5.0826 41 1 7.2893 -2.1166 -4.8157 42 1 5.5739 -1.4688 -7.2756 43 1 7.2959 -1.9734 -7.2159 44 1 4.2195 -3.8676 -8.0616 45 1 5.5005 -5.2520 -12.1612 46 1 3.3275 -2.5993 -6.5853 47 1 3.2432 -4.3712 -6.7327 48 1 2.7803 -3.5821 -5.2059 49 1 3.8984 0.1464 -4.1790 50 1 5.6022 0.6570 -3.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074675735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:46 Heat of formation + Delta-G solvation = -103.954072 kcal Electronic energy + Delta-G solvation = -30812.267593 eV Core-core repulsion = 26646.683115 eV Total energy + Delta-G solvation = -4165.584478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04558 -40.88306 -39.02861 -38.81628 -37.24799 -36.05260 -34.54305 -33.51799 -32.12646 -31.24343 -30.04987 -28.75170 -27.27976 -26.91121 -25.52168 -24.51851 -23.99197 -23.04386 -21.05176 -20.43475 -20.00923 -19.78068 -18.62468 -17.99646 -17.51954 -17.12658 -17.11668 -16.66045 -16.57413 -16.17476 -16.06333 -15.86153 -15.69291 -15.36224 -14.83941 -14.67480 -14.61803 -14.29706 -14.12827 -13.86991 -13.60671 -13.42766 -13.37119 -13.15917 -13.10534 -13.02682 -12.94582 -12.79545 -12.63293 -12.44222 -12.34979 -12.19095 -12.09465 -11.89736 -11.69999 -11.53432 -11.15213 -10.95634 -10.75275 -10.64353 -9.77502 -9.66265 -9.29943 -8.01335 -5.34229 1.36971 1.38156 1.43590 1.45060 1.55083 1.75869 2.05385 2.47563 2.81103 3.11842 3.29038 3.33021 3.53266 3.58479 3.78416 3.85086 3.90294 4.02282 4.13079 4.14687 4.15362 4.31206 4.35899 4.38333 4.43783 4.48942 4.49871 4.51627 4.54301 4.58053 4.61706 4.73270 4.78069 4.82376 4.84808 4.89891 5.00382 5.05505 5.17194 5.27069 5.32866 5.47966 5.50304 5.80036 5.98549 6.17013 6.22963 6.55602 7.04178 7.08100 7.12094 7.84425 8.01633 9.19795 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002598 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.875127 B =10774.541013 C =11339.187293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.041 3.959 4 C 0.124 3.876 5 N -0.607 5.607 6 C 0.125 3.875 7 C -0.106 4.106 8 H 0.152 0.848 9 C 0.539 3.461 10 O -0.570 6.570 11 N -0.604 5.604 12 C 0.100 3.900 13 C -0.147 4.147 14 C 0.168 3.832 15 H 0.069 0.931 16 N -0.747 5.747 17 C -0.222 4.222 18 H 0.067 0.933 19 C -0.059 4.059 20 N -0.981 5.981 21 Si 0.938 3.062 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.254 1.254 25 C 0.135 3.865 26 H 0.074 0.926 27 C -0.158 4.158 28 C -0.140 4.140 29 C 0.516 3.484 30 O -0.573 6.573 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.369 0.631 45 H 0.257 0.743 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.099 0.901 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 13.008 27.646 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.340 5.340 6 C 0.002 3.998 7 C -0.127 4.127 8 H 0.170 0.830 9 C 0.328 3.672 10 O -0.449 6.449 11 N -0.337 5.337 12 C -0.022 4.022 13 C -0.188 4.188 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.393 5.393 17 C -0.353 4.353 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.631 5.631 21 Si 0.766 3.234 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.179 1.179 25 C 0.030 3.970 26 H 0.092 0.908 27 C -0.216 4.216 28 C -0.180 4.180 29 C 0.305 3.695 30 O -0.453 6.453 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.205 0.795 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.005 13.073 27.822 31.000 hybrid contribution -1.532 -0.116 -1.044 1.858 sum -5.537 12.957 26.778 30.259 Atomic orbital electron populations 1.22842 0.80040 1.03432 1.00457 1.87874 1.20920 1.28189 1.95518 1.23086 0.94569 0.84980 1.01016 1.21659 0.91986 1.00485 0.85580 1.48325 1.65342 1.07949 1.12340 1.21971 1.00702 0.79744 0.97357 1.22199 1.04314 0.91351 0.94883 0.82994 1.20171 0.81356 0.85834 0.79803 1.90705 1.30391 1.53294 1.70516 1.48536 1.34289 1.29196 1.21675 1.22664 0.89215 0.97827 0.92493 1.23346 1.02637 0.97457 0.95368 1.21369 0.93543 0.95412 0.83799 0.91293 1.42985 1.05400 1.81660 1.09208 1.19034 0.91962 1.35045 0.89292 0.91526 1.25355 1.01547 1.02319 0.95879 1.69848 1.36090 1.54140 1.03050 0.85679 0.82204 0.77446 0.78028 1.20622 1.22433 1.17924 1.21564 0.95025 0.89717 0.90677 0.90840 1.21996 0.96793 1.01660 1.01173 1.22374 1.05618 0.92749 0.97230 1.21083 0.75967 0.87749 0.84740 1.90710 1.56338 1.15270 1.82961 0.92382 0.94629 0.89133 0.89830 0.94916 0.86989 0.87791 0.87541 0.90862 0.87900 0.88362 0.91888 0.89754 0.79473 0.93445 0.92717 0.92419 0.91753 0.88305 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -7.35 10.53 -148.98 -1.57 -8.91 16 3 C 0.04 0.60 6.28 71.98 0.45 1.05 16 4 C 0.12 1.61 6.32 86.38 0.55 2.16 16 5 N -0.61 -10.23 2.88 -817.97 -2.36 -12.58 16 6 C 0.13 1.98 6.59 86.83 0.57 2.55 16 7 C -0.11 -1.54 2.89 -10.48 -0.03 -1.57 16 8 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 9 C 0.54 12.15 6.89 87.66 0.60 12.76 16 10 O -0.57 -17.23 14.39 -3.04 -0.04 -17.28 16 11 N -0.60 -13.77 3.08 -788.05 -2.43 -16.20 16 12 C 0.10 1.75 6.64 86.85 0.58 2.33 16 13 C -0.15 -3.92 6.77 31.98 0.22 -3.70 16 14 C 0.17 5.59 3.45 46.18 0.16 5.75 16 15 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 16 N -0.75 -32.46 4.82 -317.32 -1.53 -33.99 16 17 C -0.22 -11.94 10.46 84.03 0.88 -11.06 16 18 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 19 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 20 N -0.98 -61.36 13.97 21.65 0.30 -61.05 16 21 Si 0.94 44.73 27.74 68.60 1.90 46.63 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.25 -11.05 6.50 99.48 0.65 -10.40 16 25 C 0.13 3.97 3.49 45.34 0.16 4.12 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 C -0.16 -5.08 7.93 71.98 0.57 -4.50 16 28 C -0.14 -2.21 5.37 30.59 0.16 -2.05 16 29 C 0.52 10.74 8.02 87.90 0.71 11.44 16 30 O -0.57 -16.22 17.60 -3.02 -0.05 -16.28 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.26 7.93 -2.38 -0.02 1.25 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.62 6.96 -2.39 -0.02 1.60 16 40 H 0.10 1.27 5.42 -2.39 -0.01 1.26 16 41 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.37 15.83 2.80 -92.71 -0.26 15.57 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 47 H 0.06 2.02 6.72 -2.39 -0.02 2.00 16 48 H 0.06 2.09 6.74 -2.39 -0.02 2.07 16 49 H 0.10 1.84 7.89 -2.39 -0.02 1.82 16 50 H 0.13 1.52 6.78 -2.39 -0.02 1.51 16 Total: -1.00 -76.38 394.82 2.14 -74.24 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.62 Total: 27.41 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.29 Total: 18.01 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.01 Total: -123.82 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.67 Total: -42.47 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -76.38 2.14 -74.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074675735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.714 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds