Wall clock time and date at job start Tue Mar 31 2020 23:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.00128 * 2 1 4 4 C 1.54327 * 109.88294 * 121.09732 * 2 1 3 5 5 H 1.08996 * 110.72159 * 215.58927 * 4 2 1 6 6 N 1.46504 * 110.87059 * 338.78746 * 4 2 1 7 7 C 1.36935 * 119.99851 * 200.06898 * 6 4 2 8 8 H 1.07999 * 120.00050 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99875 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99754 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99921 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47228 * 59.99797 * 11 9 7 13 13 H 1.48508 * 109.46989 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47388 * 299.99638 * 11 9 7 15 15 C 1.55155 * 102.94571 * 97.22134 * 4 2 1 16 16 C 1.54912 * 101.57968 * 35.50272 * 15 4 2 17 17 N 1.47024 * 109.88215 * 238.90155 * 2 1 3 18 18 C 1.34780 * 125.64847 * 59.79117 * 17 2 1 19 19 O 1.21289 * 119.99749 * 359.71448 * 18 17 2 20 20 C 1.50692 * 120.00414 * 179.71552 * 18 17 2 21 21 C 1.52997 * 109.47523 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47192 * 179.97438 * 21 20 18 23 23 H 1.08997 * 109.86981 * 54.30273 * 22 21 20 24 24 C 1.54102 * 109.87618 * 175.30760 * 22 21 20 25 25 C 1.54807 * 104.18615 * 121.45493 * 24 22 21 26 26 C 1.54992 * 102.09124 * 20.88023 * 25 24 22 27 27 H 1.09004 * 110.62117 * 81.63487 * 26 25 24 28 28 C 1.50707 * 110.61530 * 204.47445 * 26 25 24 29 29 N 1.34780 * 119.99984 * 295.00048 * 28 26 25 30 30 O 1.21275 * 119.99887 * 115.00305 * 28 26 25 31 31 O 1.43741 * 109.87871 * 293.29081 * 22 21 20 32 32 H 1.09006 * 109.47447 * 179.64518 * 1 2 3 33 33 H 1.08999 * 109.46933 * 299.64219 * 1 2 3 34 34 H 1.09001 * 109.47522 * 59.64199 * 1 2 3 35 35 H 0.96999 * 119.99843 * 20.06564 * 6 4 2 36 36 H 0.97000 * 119.99302 * 179.97438 * 10 9 7 37 37 H 1.08997 * 111.00368 * 277.43464 * 15 4 2 38 38 H 1.08992 * 111.03872 * 153.58929 * 15 4 2 39 39 H 1.09002 * 110.36496 * 204.15483 * 16 15 4 40 40 H 1.08995 * 110.46379 * 81.87851 * 16 15 4 41 41 H 1.08999 * 109.46911 * 300.00252 * 20 18 17 42 42 H 1.09007 * 109.47390 * 59.99552 * 20 18 17 43 43 H 1.08999 * 109.47395 * 300.00154 * 21 20 18 44 44 H 1.09001 * 109.46701 * 59.99844 * 21 20 18 45 45 H 1.09002 * 110.48545 * 240.13652 * 24 22 21 46 46 H 1.09007 * 110.48748 * 2.64601 * 24 22 21 47 47 H 1.09008 * 110.90346 * 139.08018 * 25 24 22 48 48 H 1.09001 * 110.90746 * 262.64465 * 25 24 22 49 49 H 0.97005 * 119.99897 * 359.97438 * 29 28 26 50 50 H 0.96993 * 119.99802 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9656 -0.2832 1.6183 6 7 1.0323 -0.8031 2.2905 7 6 1.3947 -1.0409 3.5894 8 1 2.4344 -1.1894 3.8414 9 6 0.4258 -1.0922 4.5821 10 7 -0.8413 -0.9117 4.2748 11 14 0.9202 -1.4173 6.3538 12 1 1.8476 -0.3520 6.8124 13 1 -0.2913 -1.4218 7.2129 14 1 1.5971 -2.7358 6.4450 15 6 2.3518 -2.1696 0.6925 16 6 2.8568 -1.8499 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.7789 -0.3820 -2.4658 19 8 1.0817 0.5779 -2.7181 20 6 2.3643 -1.2032 -3.5855 21 6 1.9281 -0.6172 -4.9298 22 6 2.5230 -1.4506 -6.0666 23 1 2.2563 -2.4994 -5.9360 24 6 1.9954 -0.9407 -7.4218 25 6 3.2731 -0.5507 -8.2039 26 6 4.3669 -1.3628 -7.4647 27 1 4.3857 -2.3932 -7.8197 28 6 5.7173 -0.7176 -7.6414 29 7 6.2769 -0.6500 -8.8657 30 8 6.3005 -0.2592 -6.6820 31 8 3.9532 -1.3081 -6.0805 32 1 -0.3634 -1.0277 -0.0064 33 1 -0.3633 0.5083 0.8932 34 1 -0.3634 0.5194 -0.8867 35 1 0.0985 -0.6701 2.0641 36 1 -1.5183 -0.9479 4.9685 37 1 1.4451 -2.7736 0.6604 38 1 3.1267 -2.6625 1.2794 39 1 2.7086 -2.7081 -1.3922 40 1 3.9092 -1.5675 -0.7148 41 1 3.4520 -1.1871 -3.5175 42 1 2.0105 -2.2311 -3.5057 43 1 0.8403 -0.6336 -4.9975 44 1 2.2816 0.4108 -5.0098 45 1 1.4554 -1.7313 -7.9428 46 1 1.3531 -0.0717 -7.2785 47 1 3.1992 -0.8574 -9.2473 48 1 3.4643 0.5197 -8.1277 49 1 5.8105 -1.0170 -9.6331 50 1 7.1462 -0.2351 -8.9794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074750720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:15 Heat of formation + Delta-G solvation = -106.849009 kcal Electronic energy + Delta-G solvation = -29797.702139 eV Core-core repulsion = 25631.992127 eV Total energy + Delta-G solvation = -4165.710012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69279 -39.91101 -38.80364 -37.45888 -34.29034 -34.12266 -33.66861 -32.44279 -31.60573 -30.63241 -29.54740 -28.47847 -25.39638 -25.13439 -23.53832 -22.91179 -22.10094 -21.23964 -20.98302 -19.44789 -18.48237 -18.13605 -17.48108 -17.41833 -16.91431 -16.57282 -16.16568 -15.53412 -15.15246 -15.06115 -14.90435 -14.68750 -14.24269 -13.91375 -13.76728 -13.47810 -13.29297 -13.20485 -12.67481 -12.45534 -12.41424 -12.27656 -12.10816 -11.86433 -11.69365 -11.46855 -11.38754 -11.21791 -11.16219 -10.95020 -10.92208 -10.77980 -10.39936 -10.36943 -10.19650 -10.17806 -9.97911 -9.94798 -9.67677 -9.36897 -8.91211 -8.28938 -6.99013 -5.78695 -3.08206 2.16106 2.67162 2.93096 3.26515 3.43867 3.48576 3.49401 3.59576 3.98295 4.21335 4.36997 4.43288 4.58022 4.60648 4.69551 4.79254 4.99621 5.03731 5.12337 5.15874 5.23687 5.32902 5.37667 5.42826 5.46597 5.59766 5.60936 5.64817 5.67042 5.73844 5.89975 5.92578 6.10443 6.14348 6.17957 6.25685 6.28556 6.39461 6.46013 6.61978 6.63242 6.78634 6.82728 6.89256 7.04885 7.68809 7.80503 7.89395 8.39854 8.47776 9.51448 10.07148 10.42374 11.43784 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.001929 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.043435 B =14508.608992 C =15112.412692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.070 0.930 4 C 0.173 3.827 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.012 4.012 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.153 4.153 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.526 3.474 19 O -0.548 6.548 20 C -0.134 4.134 21 C -0.100 4.100 22 C 0.073 3.927 23 H 0.075 0.925 24 C -0.150 4.150 25 C -0.143 4.143 26 C 0.057 3.943 27 H 0.097 0.903 28 C 0.521 3.479 29 N -0.854 5.854 30 O -0.517 6.517 31 O -0.340 6.340 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.391 0.609 36 H 0.256 0.744 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.401 0.599 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -4.144 -31.297 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.088 0.912 4 C 0.061 3.939 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.208 4.208 10 N -0.580 5.580 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C -0.194 4.194 16 C -0.025 4.025 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.427 6.427 20 C -0.174 4.174 21 C -0.138 4.138 22 C 0.015 3.985 23 H 0.093 0.907 24 C -0.188 4.188 25 C -0.181 4.181 26 C -0.005 4.005 27 H 0.115 0.885 28 C 0.304 3.696 29 N -0.420 5.420 30 O -0.390 6.390 31 O -0.258 6.258 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.229 0.771 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.481 -3.352 -30.344 31.967 hybrid contribution 0.036 -0.417 0.333 0.535 sum 9.517 -3.769 -30.011 31.709 Atomic orbital electron populations 1.21987 0.94648 1.02309 1.02576 1.21795 0.95318 0.95756 0.84687 0.91233 1.21183 0.93210 0.92090 0.87428 0.91999 1.42658 1.05230 1.85296 1.02911 1.19200 0.92992 1.41169 0.84051 0.91124 1.24757 0.95319 1.02592 0.98134 1.69654 0.99359 1.56366 1.32589 0.86242 0.76991 0.78050 0.84718 1.21236 1.21717 1.21257 1.23535 1.01604 1.01248 0.93043 1.22374 0.94595 0.88441 0.97127 1.48640 1.50243 1.30404 1.05121 1.20289 0.80660 0.85087 0.82451 1.90663 1.39298 1.29308 1.83393 1.21607 1.02982 0.99843 0.92977 1.21536 1.00847 1.00054 0.91332 1.22932 0.80677 0.99536 0.95336 0.90717 1.23007 0.97828 1.02756 0.95209 1.23099 0.93808 1.01442 0.99789 1.22981 0.92456 0.99666 0.85386 0.88534 1.20267 0.86959 0.79194 0.83169 1.43745 1.24547 1.64379 1.09351 1.90814 1.63238 1.45646 1.39322 1.89107 1.20746 1.94450 1.21526 0.92608 0.90365 0.92171 0.77126 0.93373 0.90733 0.90651 0.91389 0.91637 0.88352 0.89283 0.89741 0.90259 0.90055 0.89444 0.89412 0.89837 0.77093 0.76325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 7.95 37.16 0.30 -2.78 16 2 C 0.13 2.40 3.48 -66.95 -0.23 2.17 16 3 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 4 C 0.17 3.45 3.45 -66.09 -0.23 3.22 16 5 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 6 N -0.72 -17.73 5.03 -51.65 -0.26 -17.99 16 7 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 11 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 C -0.15 -2.59 6.77 -24.58 -0.17 -2.76 16 16 C 0.10 1.37 6.69 -2.53 -0.02 1.35 16 17 N -0.61 -9.96 3.08 -163.02 -0.50 -10.47 16 18 C 0.53 8.47 7.63 -10.99 -0.08 8.39 16 19 O -0.55 -10.53 14.89 5.55 0.08 -10.45 16 20 C -0.13 -1.60 4.62 -27.89 -0.13 -1.73 16 21 C -0.10 -1.07 3.99 -26.73 -0.11 -1.17 16 22 C 0.07 0.60 3.41 -26.15 -0.09 0.51 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 C -0.15 -0.84 6.64 -25.20 -0.17 -1.01 16 25 C -0.14 -0.69 6.57 -24.73 -0.16 -0.86 16 26 C 0.06 0.40 3.76 -26.83 -0.10 0.30 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 28 C 0.52 4.53 7.48 -10.98 -0.08 4.45 16 29 N -0.85 -3.22 8.86 31.22 0.28 -2.94 16 30 O -0.52 -7.46 17.40 -13.47 -0.23 -7.70 16 31 O -0.34 -3.65 10.12 -54.26 -0.55 -4.20 16 32 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 33 H 0.08 1.66 6.73 -51.93 -0.35 1.31 16 34 H 0.06 1.18 6.75 -51.93 -0.35 0.83 16 35 H 0.39 10.19 4.96 -40.82 -0.20 9.99 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 0.79 7.49 -51.93 -0.39 0.41 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.19 7.89 -51.93 -0.41 0.78 16 42 H 0.09 0.89 7.85 -51.92 -0.41 0.49 16 43 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.52 7.70 -51.92 -0.40 0.12 16 47 H 0.09 0.15 8.14 -51.92 -0.42 -0.27 16 48 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 49 H 0.40 0.10 8.83 -40.82 -0.36 -0.26 16 50 H 0.41 1.28 8.93 -40.82 -0.36 0.92 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -36.77 400.05 -9.23 -46.00 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.26 Total: 8.82 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.52 Total: 2.86 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.24 Total: -58.57 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.70 Total: -22.34 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.77 -9.23 -46.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074750720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.849 kcal (2) G-P(sol) polarization free energy of solvation -36.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds