Wall clock time and date at job start Tue Mar 31 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99752 * 2 1 4 4 C 1.53005 * 109.46814 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47341 * 64.99994 * 4 3 2 6 6 C 1.46820 * 124.33453 * 269.93845 * 5 4 3 7 7 C 1.54482 * 105.44260 * 196.99757 * 6 5 4 8 8 H 1.09002 * 110.96914 * 92.76611 * 7 6 5 9 9 C 1.50698 * 110.97015 * 216.49169 * 7 6 5 10 10 O 1.21285 * 120.00043 * 356.90950 * 9 7 6 11 11 N 1.34777 * 120.00143 * 176.90875 * 9 7 6 12 12 C 1.46503 * 120.00104 * 179.97438 * 11 9 7 13 13 H 1.08997 * 110.63908 * 31.85867 * 12 11 9 14 14 C 1.54337 * 111.00160 * 268.78640 * 12 11 9 15 15 N 1.47026 * 107.26213 * 219.60143 * 14 12 11 16 16 C 1.36941 * 125.64734 * 178.85056 * 15 14 12 17 17 H 1.07994 * 120.00099 * 186.33843 * 16 15 14 18 18 C 1.38811 * 119.99936 * 6.33599 * 16 15 14 19 19 N 1.31620 * 120.00033 * 7.37967 * 18 16 15 20 20 Si 1.86800 * 119.99953 * 187.38294 * 18 16 15 21 21 H 1.48497 * 109.47048 * 265.01662 * 20 18 16 22 22 H 1.48503 * 109.46983 * 25.02026 * 20 18 16 23 23 H 1.48508 * 109.46948 * 145.01930 * 20 18 16 24 24 C 1.47424 * 108.70441 * 358.58408 * 15 14 12 25 25 C 1.54911 * 104.83035 * 24.35748 * 24 15 14 26 26 H 1.09001 * 111.00529 * 81.10474 * 25 24 15 27 27 C 1.53002 * 111.00005 * 204.91666 * 25 24 15 28 28 C 1.54634 * 101.79872 * 334.62842 * 7 6 5 29 29 C 1.34427 * 124.34627 * 89.97234 * 5 4 3 30 30 O 1.21273 * 124.94356 * 359.62927 * 29 5 4 31 31 H 1.09002 * 109.46857 * 300.00062 * 1 2 3 32 32 H 1.09002 * 109.47024 * 59.99647 * 1 2 3 33 33 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47406 * 60.00449 * 3 2 1 35 35 H 1.08999 * 109.47583 * 299.99935 * 3 2 1 36 36 H 1.09001 * 109.47214 * 304.99945 * 4 3 2 37 37 H 1.09000 * 109.46697 * 185.00446 * 4 3 2 38 38 H 1.08996 * 110.23982 * 78.02394 * 6 5 4 39 39 H 1.08998 * 110.28256 * 315.99696 * 6 5 4 40 40 H 0.96998 * 120.00191 * 0.02562 * 11 9 7 41 41 H 1.08997 * 109.99248 * 100.12673 * 14 12 11 42 42 H 1.08999 * 109.78076 * 338.95264 * 14 12 11 43 43 H 0.96999 * 119.99785 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.36704 * 143.19846 * 24 15 14 45 45 H 1.09002 * 110.36399 * 265.51962 * 24 15 14 46 46 H 1.09002 * 109.47335 * 58.54911 * 27 25 24 47 47 H 1.09008 * 109.46848 * 178.54771 * 27 25 24 48 48 H 1.08996 * 109.47314 * 298.54346 * 27 25 24 49 49 H 1.08997 * 110.48251 * 143.45743 * 28 7 6 50 50 H 1.09004 * 110.48333 * 265.96727 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1392 -0.8815 -1.4478 7 6 5.0090 -1.0297 -2.7159 8 1 6.0659 -1.0985 -2.4582 9 6 4.5766 -2.2217 -3.5302 10 8 3.6911 -2.9444 -3.1244 11 7 5.1739 -2.4848 -4.7094 12 6 4.7539 -3.6440 -5.5008 13 1 3.6922 -3.8438 -5.3560 14 6 5.5921 -4.8899 -5.1446 15 7 5.8645 -5.6059 -6.3995 16 6 6.5998 -6.7549 -6.5194 17 1 6.8293 -7.1495 -7.4981 18 6 7.0503 -7.4124 -5.3829 19 7 6.6516 -7.0172 -4.1924 20 14 8.2224 -8.8581 -5.5431 21 1 7.4486 -10.1255 -5.5387 22 1 8.9781 -8.7439 -6.8163 23 1 9.1722 -8.8541 -4.4015 24 6 5.2095 -4.8856 -7.5065 25 6 5.0717 -3.4268 -7.0038 26 1 6.0059 -2.8798 -7.1312 27 6 3.9192 -2.7100 -7.7100 28 6 4.7063 0.2900 -3.4629 29 6 4.2823 1.2461 -2.3699 30 8 4.2278 2.4522 -2.4848 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8515 0.5682 0.8409 37 1 3.9785 2.1765 0.0890 38 1 3.1686 -1.3538 -1.5990 39 1 4.6452 -1.3238 -0.5896 40 1 5.8823 -1.9071 -5.0338 41 1 5.0335 -5.5330 -4.4646 42 1 6.5301 -4.5835 -4.6816 43 1 6.9661 -7.4769 -3.3983 44 1 5.8299 -4.9213 -8.4020 45 1 4.2267 -5.3120 -7.7076 46 1 2.9905 -3.2523 -7.5322 47 1 3.8283 -1.6962 -7.3199 48 1 4.1176 -2.6707 -8.7811 49 1 5.6009 0.6576 -3.9655 50 1 3.8987 0.1454 -4.1806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079795863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:52 Heat of formation + Delta-G solvation = -86.669531 kcal Electronic energy + Delta-G solvation = -30519.009291 eV Core-core repulsion = 26354.174327 eV Total energy + Delta-G solvation = -4164.834964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92233 -39.36831 -38.06906 -37.61778 -36.22549 -34.00799 -33.53292 -32.56850 -30.39397 -29.65729 -27.95562 -27.61959 -26.54539 -25.65379 -24.21320 -23.33381 -22.70211 -20.52261 -20.05085 -19.65284 -19.40821 -17.57781 -17.16100 -16.89920 -16.66365 -16.13287 -15.93157 -15.62637 -15.33752 -15.01075 -14.89946 -14.52925 -13.98057 -13.78783 -13.67836 -13.43353 -13.23946 -12.96615 -12.80668 -12.75976 -12.54782 -12.36423 -12.21906 -12.01824 -11.74899 -11.62866 -11.46614 -11.44196 -11.34794 -10.98397 -10.79842 -10.65159 -10.41397 -10.16908 -10.03353 -9.94344 -9.89030 -9.74025 -9.50058 -8.88936 -8.62691 -8.53190 -6.82850 -5.69206 -3.06404 2.38007 2.70382 2.83600 3.36925 3.40137 3.45462 3.47505 3.50787 4.13154 4.22141 4.49822 4.69265 4.70152 4.72011 4.86318 4.94208 5.01610 5.10177 5.11714 5.18688 5.19680 5.29937 5.33756 5.40678 5.44029 5.45975 5.47247 5.53423 5.62023 5.74040 5.93711 5.97591 5.98922 6.13719 6.18041 6.29554 6.32899 6.47097 6.61774 6.72258 6.80177 6.91374 6.94028 7.46593 7.60707 7.79010 7.88132 7.96253 8.25767 8.48130 9.20262 9.81715 10.46688 11.39965 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002591 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.689509 B =10804.137094 C =11438.664880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.611 5.611 6 C 0.122 3.878 7 C -0.125 4.125 8 H 0.117 0.883 9 C 0.524 3.476 10 O -0.529 6.529 11 N -0.708 5.708 12 C 0.121 3.879 13 H 0.090 0.910 14 C 0.169 3.831 15 N -0.604 5.604 16 C -0.231 4.231 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.140 3.860 25 C -0.114 4.114 26 H 0.077 0.923 27 C -0.137 4.137 28 C -0.143 4.143 29 C 0.520 3.480 30 O -0.538 6.538 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.397 0.603 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.252 0.748 44 H 0.042 0.958 45 H 0.022 0.978 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.110 0.890 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 18.304 5.682 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.036 4.036 4 C 0.007 3.993 5 N -0.345 5.345 6 C -0.001 4.001 7 C -0.147 4.147 8 H 0.135 0.865 9 C 0.308 3.692 10 O -0.405 6.405 11 N -0.358 5.358 12 C 0.016 3.984 13 H 0.108 0.892 14 C 0.043 3.957 15 N -0.331 5.331 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.563 5.563 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.013 3.987 25 C -0.134 4.134 26 H 0.095 0.905 27 C -0.195 4.195 28 C -0.184 4.184 29 C 0.308 3.692 30 O -0.415 6.415 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.128 0.872 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.765 18.099 6.136 20.628 hybrid contribution 0.802 -0.383 -0.089 0.893 sum -6.963 17.716 6.047 19.972 Atomic orbital electron populations 1.22739 0.80941 1.03009 0.99690 1.87936 1.19776 1.27174 1.95368 1.23033 0.94315 0.85519 1.00772 1.21432 0.92252 0.99722 0.85864 1.48242 1.66154 1.08096 1.11990 1.22025 1.01733 0.79737 0.96564 1.22282 1.02744 0.93592 0.96122 0.86463 1.19899 0.82333 0.85428 0.81502 1.90743 1.30724 1.49542 1.69516 1.45887 1.39306 1.29721 1.20908 1.22525 1.00305 0.86574 0.88984 0.89170 1.21529 0.96557 0.88710 0.88916 1.44420 1.60014 1.26959 1.01714 1.19037 1.24831 0.99197 0.92871 0.90394 1.24835 1.00974 0.99236 0.95374 1.69967 1.46908 1.42566 0.96859 0.86126 0.80524 0.82292 0.76956 1.21619 1.20669 1.21682 1.21587 0.95938 0.88838 0.92317 1.22613 0.98343 0.97978 0.94431 0.90473 1.21696 0.98201 0.99662 0.99921 1.22322 1.04852 0.93359 0.97845 1.20798 0.76254 0.88031 0.84080 1.90714 1.54734 1.13642 1.82439 0.94240 0.94215 0.89372 0.92260 0.92903 0.89165 0.88401 0.88240 0.89721 0.76968 0.91711 0.94816 0.93742 0.93988 0.96064 0.92624 0.93150 0.92750 0.87208 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.11 10.53 -35.23 -0.37 -4.48 16 3 C 0.04 0.37 6.28 37.16 0.23 0.60 16 4 C 0.13 1.12 6.32 -4.04 -0.03 1.10 16 5 N -0.61 -6.52 2.88 -172.37 -0.50 -7.01 16 6 C 0.12 1.35 6.57 -3.09 -0.02 1.33 16 7 C -0.13 -1.33 3.54 -90.14 -0.32 -1.65 16 8 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 9 C 0.52 7.69 7.06 -10.99 -0.08 7.61 16 10 O -0.53 -10.05 15.18 5.55 0.08 -9.96 16 11 N -0.71 -10.15 5.11 -52.03 -0.27 -10.42 16 12 C 0.12 2.18 2.77 -66.09 -0.18 1.99 16 13 H 0.09 1.76 7.42 -51.93 -0.39 1.38 16 14 C 0.17 4.03 5.19 -3.06 -0.02 4.02 16 15 N -0.60 -15.16 3.39 -170.06 -0.58 -15.74 16 16 C -0.23 -6.38 10.26 -15.06 -0.15 -6.54 16 17 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 18 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 19 N -0.92 -27.04 10.48 55.49 0.58 -26.46 16 20 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.14 2.77 6.70 -2.53 -0.02 2.75 16 25 C -0.11 -1.80 3.27 -88.47 -0.29 -2.09 16 26 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 27 C -0.14 -1.74 9.29 37.16 0.35 -1.40 16 28 C -0.14 -1.38 6.40 -26.74 -0.17 -1.55 16 29 C 0.52 6.23 8.02 -10.86 -0.09 6.14 16 30 O -0.54 -8.09 17.59 5.56 0.10 -8.00 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.78 7.93 -51.93 -0.41 0.37 16 38 H 0.10 1.34 7.01 -51.93 -0.36 0.98 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 4.50 8.57 -40.82 -0.35 4.15 16 41 H 0.06 1.83 6.99 -51.93 -0.36 1.47 16 42 H 0.03 0.88 7.80 -51.93 -0.41 0.47 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 46 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 47 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -35.26 405.80 -8.18 -43.44 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.56 Total: 2.10 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 0.24 Total: 13.41 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.76 Total: -59.63 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.19 Total: -22.44 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.26 -8.18 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079795863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.227 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds