Wall clock time and date at job start Tue Mar 31 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99752 * 2 1 4 4 C 1.53005 * 109.46814 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47341 * 64.99994 * 4 3 2 6 6 C 1.46820 * 124.33453 * 269.93845 * 5 4 3 7 7 C 1.54482 * 105.44260 * 196.99757 * 6 5 4 8 8 H 1.09002 * 110.96914 * 92.76611 * 7 6 5 9 9 C 1.50698 * 110.97015 * 216.49169 * 7 6 5 10 10 O 1.21285 * 120.00043 * 356.90950 * 9 7 6 11 11 N 1.34777 * 120.00143 * 176.90875 * 9 7 6 12 12 C 1.46503 * 120.00104 * 179.97438 * 11 9 7 13 13 H 1.08997 * 110.63908 * 31.85867 * 12 11 9 14 14 C 1.54337 * 111.00160 * 268.78640 * 12 11 9 15 15 N 1.47026 * 107.26213 * 219.60143 * 14 12 11 16 16 C 1.36941 * 125.64734 * 178.85056 * 15 14 12 17 17 H 1.07994 * 120.00099 * 186.33843 * 16 15 14 18 18 C 1.38811 * 119.99936 * 6.33599 * 16 15 14 19 19 N 1.31620 * 120.00033 * 7.37967 * 18 16 15 20 20 Si 1.86800 * 119.99953 * 187.38294 * 18 16 15 21 21 H 1.48497 * 109.47048 * 265.01662 * 20 18 16 22 22 H 1.48503 * 109.46983 * 25.02026 * 20 18 16 23 23 H 1.48508 * 109.46948 * 145.01930 * 20 18 16 24 24 C 1.47424 * 108.70441 * 358.58408 * 15 14 12 25 25 C 1.54911 * 104.83035 * 24.35748 * 24 15 14 26 26 H 1.09001 * 111.00529 * 81.10474 * 25 24 15 27 27 C 1.53002 * 111.00005 * 204.91666 * 25 24 15 28 28 C 1.54634 * 101.79872 * 334.62842 * 7 6 5 29 29 C 1.34427 * 124.34627 * 89.97234 * 5 4 3 30 30 O 1.21273 * 124.94356 * 359.62927 * 29 5 4 31 31 H 1.09002 * 109.46857 * 300.00062 * 1 2 3 32 32 H 1.09002 * 109.47024 * 59.99647 * 1 2 3 33 33 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47406 * 60.00449 * 3 2 1 35 35 H 1.08999 * 109.47583 * 299.99935 * 3 2 1 36 36 H 1.09001 * 109.47214 * 304.99945 * 4 3 2 37 37 H 1.09000 * 109.46697 * 185.00446 * 4 3 2 38 38 H 1.08996 * 110.23982 * 78.02394 * 6 5 4 39 39 H 1.08998 * 110.28256 * 315.99696 * 6 5 4 40 40 H 0.96998 * 120.00191 * 0.02562 * 11 9 7 41 41 H 1.08997 * 109.99248 * 100.12673 * 14 12 11 42 42 H 1.08999 * 109.78076 * 338.95264 * 14 12 11 43 43 H 0.96999 * 119.99785 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.36704 * 143.19846 * 24 15 14 45 45 H 1.09002 * 110.36399 * 265.51962 * 24 15 14 46 46 H 1.09002 * 109.47335 * 58.54911 * 27 25 24 47 47 H 1.09008 * 109.46848 * 178.54771 * 27 25 24 48 48 H 1.08996 * 109.47314 * 298.54346 * 27 25 24 49 49 H 1.08997 * 110.48251 * 143.45743 * 28 7 6 50 50 H 1.09004 * 110.48333 * 265.96727 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1392 -0.8815 -1.4478 7 6 5.0090 -1.0297 -2.7159 8 1 6.0659 -1.0985 -2.4582 9 6 4.5766 -2.2217 -3.5302 10 8 3.6911 -2.9444 -3.1244 11 7 5.1739 -2.4848 -4.7094 12 6 4.7539 -3.6440 -5.5008 13 1 3.6922 -3.8438 -5.3560 14 6 5.5921 -4.8899 -5.1446 15 7 5.8645 -5.6059 -6.3995 16 6 6.5998 -6.7549 -6.5194 17 1 6.8293 -7.1495 -7.4981 18 6 7.0503 -7.4124 -5.3829 19 7 6.6516 -7.0172 -4.1924 20 14 8.2224 -8.8581 -5.5431 21 1 7.4486 -10.1255 -5.5387 22 1 8.9781 -8.7439 -6.8163 23 1 9.1722 -8.8541 -4.4015 24 6 5.2095 -4.8856 -7.5065 25 6 5.0717 -3.4268 -7.0038 26 1 6.0059 -2.8798 -7.1312 27 6 3.9192 -2.7100 -7.7100 28 6 4.7063 0.2900 -3.4629 29 6 4.2823 1.2461 -2.3699 30 8 4.2278 2.4522 -2.4848 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8515 0.5682 0.8409 37 1 3.9785 2.1765 0.0890 38 1 3.1686 -1.3538 -1.5990 39 1 4.6452 -1.3238 -0.5896 40 1 5.8823 -1.9071 -5.0338 41 1 5.0335 -5.5330 -4.4646 42 1 6.5301 -4.5835 -4.6816 43 1 6.9661 -7.4769 -3.3983 44 1 5.8299 -4.9213 -8.4020 45 1 4.2267 -5.3120 -7.7076 46 1 2.9905 -3.2523 -7.5322 47 1 3.8283 -1.6962 -7.3199 48 1 4.1176 -2.6707 -8.7811 49 1 5.6009 0.6576 -3.9655 50 1 3.8987 0.1454 -4.1806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079795863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:51 Heat of formation + Delta-G solvation = -112.567636 kcal Electronic energy + Delta-G solvation = -30520.132317 eV Core-core repulsion = 26354.174327 eV Total energy + Delta-G solvation = -4165.957990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90366 -40.61670 -39.13571 -38.80793 -37.24042 -35.61167 -34.58745 -33.99015 -32.14632 -30.55379 -29.34533 -28.68074 -27.40096 -27.20388 -25.60082 -24.40118 -23.72535 -22.07439 -21.53219 -20.81831 -20.41182 -18.86804 -18.59057 -18.00675 -17.45125 -17.33922 -17.07719 -16.82623 -16.47574 -16.23083 -15.88120 -15.65328 -15.50686 -15.24175 -14.70674 -14.66561 -14.40210 -14.18750 -14.06414 -14.01276 -13.62370 -13.37520 -13.33049 -13.10884 -13.05237 -12.93462 -12.78887 -12.58481 -12.46960 -12.35909 -12.17169 -12.08664 -11.99707 -11.82332 -11.61550 -11.43840 -11.16267 -10.77158 -10.72858 -10.64269 -9.96559 -9.76106 -8.88707 -7.81793 -5.21552 1.46345 1.46974 1.47778 1.57423 1.61649 1.87176 2.23244 2.51198 2.82947 3.20437 3.34275 3.35191 3.61617 3.75716 3.85710 3.88335 4.03084 4.09337 4.14012 4.15351 4.23138 4.31992 4.44941 4.50022 4.50963 4.55007 4.56179 4.65819 4.68631 4.76103 4.77774 4.81160 4.84565 4.90897 5.01436 5.09339 5.10546 5.24949 5.29998 5.47291 5.49632 5.52773 5.71884 5.78591 6.00464 6.19548 6.20322 6.62201 7.06476 7.08679 7.31628 7.78036 8.41808 9.25514 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002591 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.689509 B =10804.137094 C =11438.664880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.042 3.958 4 C 0.122 3.878 5 N -0.608 5.608 6 C 0.124 3.876 7 C -0.111 4.111 8 H 0.145 0.855 9 C 0.523 3.477 10 O -0.577 6.577 11 N -0.697 5.697 12 C 0.138 3.862 13 H 0.073 0.927 14 C 0.182 3.818 15 N -0.626 5.626 16 C -0.242 4.242 17 H 0.086 0.914 18 C -0.068 4.068 19 N -0.949 5.949 20 Si 0.978 3.022 21 H -0.289 1.289 22 H -0.265 1.265 23 H -0.295 1.295 24 C 0.130 3.870 25 C -0.093 4.093 26 H 0.096 0.904 27 C -0.130 4.130 28 C -0.134 4.134 29 C 0.516 3.484 30 O -0.571 6.571 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.416 0.584 41 H 0.008 0.992 42 H 0.006 0.994 43 H 0.244 0.756 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.046 0.954 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.139 0.861 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 20.134 4.588 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.035 4.035 4 C 0.001 3.999 5 N -0.340 5.340 6 C 0.001 3.999 7 C -0.132 4.132 8 H 0.163 0.837 9 C 0.310 3.690 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.032 3.968 13 H 0.091 0.909 14 C 0.055 3.945 15 N -0.353 5.353 16 C -0.371 4.371 17 H 0.104 0.896 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.189 1.189 23 H -0.222 1.222 24 C 0.005 3.995 25 C -0.112 4.112 26 H 0.114 0.886 27 C -0.187 4.187 28 C -0.174 4.174 29 C 0.305 3.695 30 O -0.452 6.452 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.157 0.843 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.918 19.963 5.005 21.712 hybrid contribution 0.460 -0.996 0.261 1.127 sum -6.458 18.967 5.265 20.716 Atomic orbital electron populations 1.22849 0.79957 1.03360 1.00603 1.87900 1.21052 1.28320 1.95532 1.23078 0.94305 0.84936 1.01191 1.21665 0.92295 1.00391 0.85560 1.48340 1.65427 1.07730 1.12494 1.21922 1.00650 0.79915 0.97383 1.22204 1.03872 0.92005 0.95164 0.83732 1.20590 0.81276 0.85906 0.81247 1.90736 1.32872 1.51486 1.70483 1.45694 1.39777 1.28613 1.20668 1.22018 0.98028 0.85542 0.91225 0.90894 1.21192 0.95163 0.90243 0.87885 1.44747 1.60032 1.26909 1.03602 1.19480 1.24453 0.99969 0.93158 0.89646 1.25705 1.03011 1.02258 0.95161 1.70230 1.48292 1.43913 0.97340 0.85075 0.78304 0.78811 0.77212 1.21667 1.18929 1.22158 1.21861 0.95394 0.90830 0.91431 1.22527 1.00741 0.95882 0.92097 0.88557 1.21656 0.96082 1.00116 1.00868 1.22342 1.06187 0.91727 0.97124 1.21123 0.75840 0.87813 0.84717 1.90699 1.56415 1.15032 1.83020 0.92343 0.94244 0.89397 0.89796 0.94449 0.87592 0.87561 0.90879 0.88551 0.74688 0.97375 0.97585 0.94633 0.92707 0.96243 0.93453 0.90919 0.90652 0.84301 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.41 -8.63 10.53 -148.98 -1.57 -10.20 16 3 C 0.04 0.71 6.28 71.98 0.45 1.16 16 4 C 0.12 1.97 6.32 86.38 0.55 2.51 16 5 N -0.61 -12.21 2.88 -817.85 -2.36 -14.57 16 6 C 0.12 2.66 6.57 86.82 0.57 3.23 16 7 C -0.11 -2.14 3.54 -10.48 -0.04 -2.18 16 8 H 0.14 2.10 8.14 -2.39 -0.02 2.09 16 9 C 0.52 15.06 7.06 87.66 0.62 15.68 16 10 O -0.58 -22.57 15.18 -3.04 -0.05 -22.62 16 11 N -0.70 -19.07 5.11 -436.90 -2.23 -21.30 16 12 C 0.14 4.95 2.77 46.18 0.13 5.08 16 13 H 0.07 2.91 7.42 -2.39 -0.02 2.89 16 14 C 0.18 9.02 5.19 86.73 0.45 9.48 16 15 N -0.63 -31.91 3.39 -691.96 -2.35 -34.26 16 16 C -0.24 -13.50 10.26 84.03 0.86 -12.64 16 17 H 0.09 4.52 7.84 -2.91 -0.02 4.49 16 18 C -0.07 -3.92 5.45 84.86 0.46 -3.46 16 19 N -0.95 -58.41 10.48 21.65 0.23 -58.18 16 20 Si 0.98 45.97 29.56 68.60 2.03 48.00 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 C 0.13 5.02 6.70 86.86 0.58 5.60 16 25 C -0.09 -2.72 3.27 -9.40 -0.03 -2.75 16 26 H 0.10 2.51 8.01 -2.39 -0.02 2.50 16 27 C -0.13 -2.85 9.29 71.98 0.67 -2.18 16 28 C -0.13 -2.23 6.40 30.59 0.20 -2.03 16 29 C 0.52 11.53 8.02 87.90 0.71 12.23 16 30 O -0.57 -16.50 17.59 -3.01 -0.05 -16.55 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.55 7.93 -2.39 -0.02 1.53 16 38 H 0.07 2.01 7.01 -2.39 -0.02 2.00 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.42 8.23 8.57 -92.71 -0.79 7.44 16 41 H 0.01 0.49 6.99 -2.39 -0.02 0.47 16 42 H 0.01 0.32 7.80 -2.39 -0.02 0.31 16 43 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.02 0.77 8.04 -2.39 -0.02 0.75 16 46 H 0.05 1.13 8.11 -2.39 -0.02 1.11 16 47 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.11 1.88 7.89 -2.39 -0.02 1.86 16 Total: -1.00 -81.43 405.80 1.21 -80.22 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.13 Total: 18.02 kcal Atomic # 6 Polarization: 24.02 SS G_CDS: 7.42 Total: 31.44 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -6.71 Total: -128.31 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.67 Total: -49.36 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -81.43 1.21 -80.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079795863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.346 kcal (2) G-P(sol) polarization free energy of solvation -81.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds