Wall clock time and date at job start Tue Mar 31 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42908 * 113.99578 * 2 1 4 4 H 1.09000 * 110.88572 * 32.42674 * 3 2 1 5 5 C 1.55544 * 110.96110 * 156.35100 * 3 2 1 6 6 C 1.54328 * 102.75856 * 153.59738 * 5 3 2 7 7 H 1.08998 * 109.88279 * 218.26162 * 6 5 3 8 8 C 1.50707 * 109.88133 * 97.25405 * 6 5 3 9 9 O 1.21279 * 119.99786 * 260.31517 * 8 6 5 10 10 N 1.34778 * 119.99750 * 80.31624 * 8 6 5 11 11 C 1.46500 * 119.99379 * 179.97438 * 10 8 6 12 12 H 1.09003 * 110.78101 * 31.76468 * 11 10 8 13 13 C 1.54316 * 110.72232 * 268.51936 * 11 10 8 14 14 N 1.47020 * 107.27568 * 219.44595 * 13 11 10 15 15 C 1.36938 * 125.65236 * 178.97773 * 14 13 11 16 16 H 1.07994 * 120.00035 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99774 * 359.95644 * 15 14 13 18 18 N 1.31617 * 120.00082 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99981 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46602 * 60.00170 * 19 17 15 21 21 H 1.48496 * 109.46844 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46930 * 300.00140 * 19 17 15 23 23 C 1.47422 * 108.70191 * 358.94070 * 14 13 11 24 24 C 1.54917 * 104.83074 * 24.12901 * 23 14 13 25 25 H 1.08998 * 111.00524 * 81.06438 * 24 23 14 26 26 C 1.52994 * 111.00301 * 204.91369 * 24 23 14 27 27 N 1.47013 * 107.40087 * 337.75914 * 6 5 3 28 28 C 1.34776 * 125.64798 * 179.05746 * 27 6 5 29 29 C 1.50706 * 120.00140 * 180.02562 * 28 27 6 30 30 O 1.21285 * 119.99971 * 359.97438 * 28 27 6 31 31 C 1.47419 * 108.70549 * 359.01494 * 27 6 5 32 32 H 1.08996 * 109.47256 * 300.00243 * 1 2 3 33 33 H 1.08998 * 109.46707 * 60.00207 * 1 2 3 34 34 H 1.09003 * 109.46822 * 179.97438 * 1 2 3 35 35 H 1.09001 * 110.78915 * 35.30498 * 5 3 2 36 36 H 1.09000 * 110.83385 * 271.90694 * 5 3 2 37 37 H 0.97001 * 120.00319 * 359.97438 * 10 8 6 38 38 H 1.09000 * 109.88340 * 338.86942 * 13 11 10 39 39 H 1.09003 * 109.88233 * 100.02906 * 13 11 10 40 40 H 0.97006 * 120.00279 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36873 * 265.28987 * 23 14 13 42 42 H 1.09005 * 110.36491 * 142.96394 * 23 14 13 43 43 H 1.09004 * 109.47256 * 58.54476 * 26 24 23 44 44 H 1.08998 * 109.47483 * 178.54488 * 26 24 23 45 45 H 1.08999 * 109.47641 * 298.54675 * 26 24 23 46 46 H 1.08990 * 109.47195 * 89.99318 * 29 28 27 47 47 H 1.09000 * 109.46986 * 209.99993 * 29 28 27 48 48 H 1.08995 * 109.46463 * 329.99446 * 29 28 27 49 49 H 1.09006 * 110.36907 * 142.96300 * 31 27 6 50 50 H 1.09003 * 110.37294 * 265.18285 * 31 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3829 2.0101 0.5461 5 6 3.4520 1.2728 0.5826 6 6 4.1216 2.4863 -0.0963 7 1 5.1540 2.2459 -0.3503 8 6 4.0853 3.6756 0.8286 9 8 3.2402 4.5329 0.6810 10 7 4.9919 3.7865 1.8197 11 6 4.9568 4.9429 2.7184 12 1 3.9343 5.2942 2.8569 13 6 5.8562 6.0772 2.1839 14 7 6.5347 6.6786 3.3413 15 6 7.4374 7.7072 3.2916 16 1 7.8819 8.0799 4.2025 17 6 7.7813 8.2703 2.0704 18 7 7.2394 7.8161 0.9603 19 14 9.0122 9.6739 2.0026 20 1 10.3092 9.2224 2.5675 21 1 9.2057 10.0947 0.5918 22 1 8.4995 10.8205 2.7949 23 6 6.0815 5.9916 4.5644 24 6 5.6080 4.5971 4.0836 25 1 6.4531 3.9210 3.9533 26 6 4.5785 4.0049 5.0480 27 7 3.3611 2.7807 -1.3195 28 6 3.6196 3.7827 -2.1830 29 6 2.7534 3.9690 -3.4021 30 8 4.5486 4.5350 -1.9785 31 6 2.2697 1.7978 -1.4457 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.9596 0.3483 0.3074 36 1 3.4355 1.3973 1.6654 37 1 5.6675 3.1006 1.9380 38 1 6.5937 5.6707 1.4919 39 1 5.2467 6.8277 1.6805 40 1 7.4800 8.2094 0.1068 41 1 5.2552 6.5360 5.0214 42 1 6.9062 5.8897 5.2699 43 1 3.7254 4.6787 5.1275 44 1 4.2439 3.0376 4.6733 45 1 5.0327 3.8765 6.0305 46 1 1.9249 4.6348 -3.1609 47 1 3.3468 4.4039 -4.2064 48 1 2.3622 3.0029 -3.7208 49 1 1.3761 2.2730 -1.8507 50 1 2.5782 0.9677 -2.0813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080203677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:49 Heat of formation + Delta-G solvation = -75.375396 kcal Electronic energy + Delta-G solvation = -31410.817378 eV Core-core repulsion = 27246.472165 eV Total energy + Delta-G solvation = -4164.345214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77170 -38.92947 -38.42585 -37.38545 -36.10562 -33.82988 -32.64298 -31.86413 -30.30285 -29.79612 -29.01827 -27.44866 -26.85813 -25.56818 -24.18855 -23.27999 -21.99279 -20.81798 -20.06625 -19.74123 -19.00172 -17.66318 -17.23190 -16.77808 -16.51685 -15.99579 -15.60842 -15.24894 -15.00220 -14.93130 -14.78090 -14.36188 -13.90781 -13.67145 -13.51334 -13.18834 -13.10792 -12.94351 -12.81826 -12.72238 -12.60516 -12.29590 -12.05000 -12.01578 -11.86671 -11.65151 -11.61919 -11.28157 -11.13194 -10.93551 -10.69756 -10.54509 -10.34312 -10.16313 -9.92254 -9.87289 -9.71953 -9.63721 -9.56981 -8.64532 -8.52363 -8.37436 -6.73893 -5.57260 -2.94329 2.55056 2.81378 3.03609 3.35281 3.47483 3.50941 3.54101 3.62807 4.07684 4.23851 4.58259 4.67166 4.75583 4.87209 4.87830 4.95069 5.02651 5.10100 5.13636 5.20604 5.28723 5.33095 5.34050 5.36120 5.46198 5.49547 5.51333 5.61351 5.63975 5.74061 5.82507 6.02198 6.04597 6.09495 6.19392 6.24246 6.38881 6.55500 6.68097 6.74475 6.84849 7.00050 7.42784 7.66413 7.69144 7.95857 7.99206 8.27340 8.36619 8.64886 9.31467 9.92446 10.57456 11.52229 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.003396 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.258046 B = 8244.161887 C = 9954.963405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.114 4.114 6 C 0.120 3.880 7 H 0.101 0.899 8 C 0.510 3.490 9 O -0.527 6.527 10 N -0.709 5.709 11 C 0.123 3.877 12 H 0.086 0.914 13 C 0.175 3.825 14 N -0.606 5.606 15 C -0.236 4.236 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.077 0.923 26 C -0.136 4.136 27 N -0.603 5.603 28 C 0.527 3.473 29 C -0.165 4.165 30 O -0.512 6.512 31 C 0.084 3.916 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.254 0.746 41 H 0.020 0.980 42 H 0.041 0.959 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 -20.263 -3.066 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.152 4.152 6 C 0.012 3.988 7 H 0.119 0.881 8 C 0.294 3.706 9 O -0.402 6.402 10 N -0.360 5.360 11 C 0.018 3.982 12 H 0.104 0.896 13 C 0.049 3.951 14 N -0.333 5.333 15 C -0.364 4.364 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.559 5.559 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.015 3.985 24 C -0.134 4.134 25 H 0.095 0.905 26 C -0.193 4.193 27 N -0.341 5.341 28 C 0.316 3.684 29 C -0.224 4.224 30 O -0.386 6.386 31 C -0.040 4.040 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.228 0.772 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.792 -19.143 -3.335 23.828 hybrid contribution 0.751 0.688 -0.108 1.024 sum -13.041 -18.455 -3.444 22.859 Atomic orbital electron populations 1.22850 0.80573 1.02978 1.00418 1.87908 1.20091 1.26330 1.94803 1.23343 0.94931 0.85177 0.94907 0.89680 1.22721 0.94156 0.97152 1.01151 1.21484 0.98320 0.93305 0.85717 0.88101 1.20511 0.81740 0.87285 0.81099 1.90682 1.37560 1.41394 1.70537 1.45848 1.32725 1.25310 1.32077 1.22471 1.00849 0.86938 0.87946 0.89565 1.21446 0.93216 0.91217 0.89182 1.44405 1.49371 1.39022 1.00491 1.18960 1.16124 1.08201 0.93109 0.90469 1.24860 1.00213 0.99776 0.95495 1.69976 1.45461 1.43309 0.97164 0.86230 0.80956 0.82115 0.76599 1.21221 1.21631 1.21207 1.21566 0.96581 0.89527 0.90849 1.22627 0.97749 0.98519 0.94550 0.90468 1.21683 0.98763 1.00131 0.98759 1.48101 1.31815 1.31130 1.23048 1.20512 0.85468 0.78618 0.83813 1.21856 1.00990 1.03679 0.95912 1.90878 1.30634 1.42030 1.75014 1.22725 0.90729 0.92337 0.98178 0.93655 0.93772 0.89343 0.88236 0.88824 0.77167 0.93075 0.93614 0.93575 0.96222 0.94068 0.92734 0.93233 0.92771 0.88766 0.88772 0.90519 0.90245 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.89 101.05 1.10 1.26 16 2 O -0.37 -3.15 10.52 -35.23 -0.37 -3.52 16 3 C 0.08 0.68 3.50 -24.37 -0.09 0.60 16 4 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 5 C -0.11 -1.05 6.25 -24.68 -0.15 -1.21 16 6 C 0.12 1.58 3.28 -68.10 -0.22 1.35 16 7 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 8 C 0.51 8.98 6.19 -10.98 -0.07 8.91 16 9 O -0.53 -11.51 15.60 5.56 0.09 -11.42 16 10 N -0.71 -11.97 5.10 -52.03 -0.27 -12.24 16 11 C 0.12 2.46 2.78 -66.10 -0.18 2.28 16 12 H 0.09 1.85 7.42 -51.93 -0.39 1.46 16 13 C 0.18 4.63 5.12 -3.07 -0.02 4.62 16 14 N -0.61 -16.26 3.39 -170.08 -0.58 -16.83 16 15 C -0.24 -6.88 10.28 -15.06 -0.15 -7.03 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.91 -28.99 10.31 55.49 0.57 -28.42 16 19 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 C 0.14 2.98 6.70 -2.53 -0.02 2.97 16 24 C -0.11 -1.96 3.27 -88.47 -0.29 -2.25 16 25 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 26 C -0.14 -1.82 9.29 37.15 0.35 -1.47 16 27 N -0.60 -7.97 2.79 -164.32 -0.46 -8.43 16 28 C 0.53 8.36 7.30 -10.98 -0.08 8.28 16 29 C -0.16 -1.73 9.67 36.01 0.35 -1.38 16 30 O -0.51 -11.25 16.72 5.55 0.09 -11.15 16 31 C 0.08 0.76 6.00 -2.53 -0.02 0.74 16 32 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 33 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.83 7.82 -51.93 -0.41 0.42 16 37 H 0.39 5.42 8.56 -40.82 -0.35 5.07 16 38 H 0.05 1.51 7.27 -51.93 -0.38 1.13 16 39 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 40 H 0.25 7.95 8.31 -40.82 -0.34 7.61 16 41 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 0.55 7.18 -51.93 -0.37 0.18 16 49 H 0.08 0.60 7.55 -51.93 -0.39 0.21 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 402.35 15.07 6.06 6.06 Total: -1.00 -39.66 402.35 -8.00 -47.66 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.53 Total: 2.71 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 0.41 Total: 17.38 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.73 Total: -65.92 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.19 Total: -26.09 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -39.66 -8.00 -47.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080203677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.712 kcal (2) G-P(sol) polarization free energy of solvation -39.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds