Wall clock time and date at job start Tue Mar 31 2020 23:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42908 * 113.99578 * 2 1 4 4 H 1.09000 * 110.88572 * 32.42674 * 3 2 1 5 5 C 1.55544 * 110.96110 * 156.35100 * 3 2 1 6 6 C 1.54328 * 102.75856 * 153.59738 * 5 3 2 7 7 H 1.08998 * 109.88279 * 218.26162 * 6 5 3 8 8 C 1.50707 * 109.88133 * 97.25405 * 6 5 3 9 9 O 1.21279 * 119.99786 * 260.31517 * 8 6 5 10 10 N 1.34778 * 119.99750 * 80.31624 * 8 6 5 11 11 C 1.46500 * 119.99379 * 179.97438 * 10 8 6 12 12 H 1.09003 * 110.78101 * 31.76468 * 11 10 8 13 13 C 1.54316 * 110.72232 * 268.51936 * 11 10 8 14 14 N 1.47020 * 107.27568 * 219.44595 * 13 11 10 15 15 C 1.36938 * 125.65236 * 178.97773 * 14 13 11 16 16 H 1.07994 * 120.00035 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99774 * 359.95644 * 15 14 13 18 18 N 1.31617 * 120.00082 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99981 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46602 * 60.00170 * 19 17 15 21 21 H 1.48496 * 109.46844 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46930 * 300.00140 * 19 17 15 23 23 C 1.47422 * 108.70191 * 358.94070 * 14 13 11 24 24 C 1.54917 * 104.83074 * 24.12901 * 23 14 13 25 25 H 1.08998 * 111.00524 * 81.06438 * 24 23 14 26 26 C 1.52994 * 111.00301 * 204.91369 * 24 23 14 27 27 N 1.47013 * 107.40087 * 337.75914 * 6 5 3 28 28 C 1.34776 * 125.64798 * 179.05746 * 27 6 5 29 29 C 1.50706 * 120.00140 * 180.02562 * 28 27 6 30 30 O 1.21285 * 119.99971 * 359.97438 * 28 27 6 31 31 C 1.47419 * 108.70549 * 359.01494 * 27 6 5 32 32 H 1.08996 * 109.47256 * 300.00243 * 1 2 3 33 33 H 1.08998 * 109.46707 * 60.00207 * 1 2 3 34 34 H 1.09003 * 109.46822 * 179.97438 * 1 2 3 35 35 H 1.09001 * 110.78915 * 35.30498 * 5 3 2 36 36 H 1.09000 * 110.83385 * 271.90694 * 5 3 2 37 37 H 0.97001 * 120.00319 * 359.97438 * 10 8 6 38 38 H 1.09000 * 109.88340 * 338.86942 * 13 11 10 39 39 H 1.09003 * 109.88233 * 100.02906 * 13 11 10 40 40 H 0.97006 * 120.00279 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36873 * 265.28987 * 23 14 13 42 42 H 1.09005 * 110.36491 * 142.96394 * 23 14 13 43 43 H 1.09004 * 109.47256 * 58.54476 * 26 24 23 44 44 H 1.08998 * 109.47483 * 178.54488 * 26 24 23 45 45 H 1.08999 * 109.47641 * 298.54675 * 26 24 23 46 46 H 1.08990 * 109.47195 * 89.99318 * 29 28 27 47 47 H 1.09000 * 109.46986 * 209.99993 * 29 28 27 48 48 H 1.08995 * 109.46463 * 329.99446 * 29 28 27 49 49 H 1.09006 * 110.36907 * 142.96300 * 31 27 6 50 50 H 1.09003 * 110.37294 * 265.18285 * 31 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3829 2.0101 0.5461 5 6 3.4520 1.2728 0.5826 6 6 4.1216 2.4863 -0.0963 7 1 5.1540 2.2459 -0.3503 8 6 4.0853 3.6756 0.8286 9 8 3.2402 4.5329 0.6810 10 7 4.9919 3.7865 1.8197 11 6 4.9568 4.9429 2.7184 12 1 3.9343 5.2942 2.8569 13 6 5.8562 6.0772 2.1839 14 7 6.5347 6.6786 3.3413 15 6 7.4374 7.7072 3.2916 16 1 7.8819 8.0799 4.2025 17 6 7.7813 8.2703 2.0704 18 7 7.2394 7.8161 0.9603 19 14 9.0122 9.6739 2.0026 20 1 10.3092 9.2224 2.5675 21 1 9.2057 10.0947 0.5918 22 1 8.4995 10.8205 2.7949 23 6 6.0815 5.9916 4.5644 24 6 5.6080 4.5971 4.0836 25 1 6.4531 3.9210 3.9533 26 6 4.5785 4.0049 5.0480 27 7 3.3611 2.7807 -1.3195 28 6 3.6196 3.7827 -2.1830 29 6 2.7534 3.9690 -3.4021 30 8 4.5486 4.5350 -1.9785 31 6 2.2697 1.7978 -1.4457 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.9596 0.3483 0.3074 36 1 3.4355 1.3973 1.6654 37 1 5.6675 3.1006 1.9380 38 1 6.5937 5.6707 1.4919 39 1 5.2467 6.8277 1.6805 40 1 7.4800 8.2094 0.1068 41 1 5.2552 6.5360 5.0214 42 1 6.9062 5.8897 5.2699 43 1 3.7254 4.6787 5.1275 44 1 4.2439 3.0376 4.6733 45 1 5.0327 3.8765 6.0305 46 1 1.9249 4.6348 -3.1609 47 1 3.3468 4.4039 -4.2064 48 1 2.3622 3.0029 -3.7208 49 1 1.3761 2.2730 -1.8507 50 1 2.5782 0.9677 -2.0813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080203677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:48 Heat of formation + Delta-G solvation = -107.081078 kcal Electronic energy + Delta-G solvation = -31412.192240 eV Core-core repulsion = 27246.472165 eV Total energy + Delta-G solvation = -4165.720075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91799 -40.39353 -39.37215 -38.94409 -37.12582 -35.65287 -34.36152 -32.94801 -32.19501 -30.71517 -30.10436 -29.07139 -27.38618 -27.35769 -25.62549 -24.62545 -23.05571 -22.21085 -21.61277 -21.34880 -20.20308 -18.92332 -18.66509 -18.31280 -17.66292 -17.17806 -16.94078 -16.69632 -16.25353 -15.95274 -15.78737 -15.69669 -15.54193 -15.17157 -14.76789 -14.52108 -14.29137 -14.11012 -14.00920 -13.82800 -13.77635 -13.57123 -13.35760 -13.20146 -13.08215 -13.04748 -12.87314 -12.61030 -12.59763 -12.33261 -12.28120 -12.07565 -11.88780 -11.84179 -11.68100 -11.49876 -11.13775 -11.00913 -10.77718 -10.61210 -10.01540 -9.79334 -8.97152 -7.86110 -5.26496 1.38058 1.39822 1.44999 1.51790 1.62188 1.84655 2.22065 2.46904 2.73695 3.29991 3.30835 3.41349 3.50635 3.68238 3.80020 3.81159 4.01807 4.03165 4.07820 4.09815 4.28676 4.40169 4.46315 4.47697 4.54732 4.58704 4.60508 4.64114 4.71158 4.74648 4.79633 4.86060 4.89595 4.93207 4.96326 5.04934 5.06246 5.12278 5.20007 5.27461 5.40872 5.48527 5.58084 5.76295 6.12324 6.15909 6.36256 6.56380 7.01463 7.10613 7.26970 7.72710 8.36560 9.21629 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.003396 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.258046 B = 8244.161887 C = 9954.963405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.378 6.378 3 C 0.080 3.920 4 H 0.073 0.927 5 C -0.102 4.102 6 C 0.119 3.881 7 H 0.106 0.894 8 C 0.503 3.497 9 O -0.576 6.576 10 N -0.700 5.700 11 C 0.140 3.860 12 H 0.071 0.929 13 C 0.193 3.807 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.092 0.908 17 C -0.075 4.075 18 N -0.953 5.953 19 Si 0.984 3.016 20 H -0.268 1.268 21 H -0.300 1.300 22 H -0.274 1.274 23 C 0.131 3.869 24 C -0.092 4.092 25 H 0.093 0.907 26 C -0.126 4.126 27 N -0.603 5.603 28 C 0.513 3.487 29 C -0.156 4.156 30 O -0.592 6.592 31 C 0.081 3.919 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.413 0.587 38 H 0.010 0.990 39 H -0.022 1.022 40 H 0.241 0.759 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.118 0.882 49 H 0.097 0.903 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.743 -23.464 -1.710 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.091 0.909 5 C -0.140 4.140 6 C 0.010 3.990 7 H 0.123 0.877 8 C 0.289 3.711 9 O -0.454 6.454 10 N -0.352 5.352 11 C 0.033 3.967 12 H 0.089 0.911 13 C 0.066 3.934 14 N -0.355 5.355 15 C -0.374 4.374 16 H 0.109 0.891 17 C -0.267 4.267 18 N -0.601 5.601 19 Si 0.811 3.189 20 H -0.194 1.194 21 H -0.227 1.227 22 H -0.200 1.200 23 C 0.006 3.994 24 C -0.112 4.112 25 H 0.111 0.889 26 C -0.184 4.184 27 N -0.338 5.338 28 C 0.304 3.696 29 C -0.215 4.215 30 O -0.472 6.472 31 C -0.041 4.041 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.249 0.751 38 H 0.028 0.972 39 H -0.003 1.003 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.137 0.863 49 H 0.116 0.884 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.661 -22.443 -1.914 26.876 hybrid contribution 0.936 1.667 -0.488 1.973 sum -13.724 -20.777 -2.402 25.016 Atomic orbital electron populations 1.23057 0.79206 1.04283 1.00996 1.87896 1.21538 1.25368 1.94818 1.23179 0.94621 0.85498 0.94575 0.90921 1.22747 0.94171 0.95883 1.01198 1.21631 0.99535 0.92599 0.85186 0.87667 1.21445 0.80665 0.88003 0.80956 1.90652 1.39610 1.43517 1.71643 1.45709 1.33240 1.24531 1.31688 1.21998 0.98542 0.86131 0.89984 0.91092 1.21019 0.92032 0.91520 0.88803 1.44745 1.48989 1.39152 1.02597 1.19502 1.15847 1.08494 0.93526 0.89057 1.25855 1.02748 1.02962 0.95162 1.70304 1.47474 1.44993 0.97349 0.85076 0.78923 0.78854 0.76036 1.19360 1.22677 1.19960 1.21881 0.97170 0.91218 0.89087 1.22555 0.99044 0.96729 0.92884 0.88868 1.21638 0.97235 1.00746 0.98768 1.48270 1.32484 1.30943 1.22130 1.21538 0.84934 0.77907 0.85183 1.21885 1.00066 1.06190 0.93366 1.90843 1.34188 1.45064 1.77085 1.23033 0.90077 0.92086 0.98936 0.93694 0.92664 0.87704 0.85547 0.88063 0.75072 0.97217 1.00331 0.94958 0.95766 0.92390 0.93341 0.90765 0.90243 0.88078 0.88845 0.86318 0.88425 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.89 113.37 1.23 1.41 16 2 O -0.38 -5.09 10.52 -148.98 -1.57 -6.66 16 3 C 0.08 1.26 3.50 32.12 0.11 1.37 16 4 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 5 C -0.10 -1.63 6.25 31.92 0.20 -1.43 16 6 C 0.12 3.07 3.28 44.60 0.15 3.22 16 7 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 8 C 0.50 18.34 6.19 87.66 0.54 18.89 16 9 O -0.58 -26.68 15.60 -3.03 -0.05 -26.72 16 10 N -0.70 -24.15 5.10 -436.92 -2.23 -26.37 16 11 C 0.14 5.79 2.78 46.18 0.13 5.92 16 12 H 0.07 3.18 7.42 -2.39 -0.02 3.16 16 13 C 0.19 10.96 5.12 86.73 0.44 11.40 16 14 N -0.63 -34.89 3.39 -692.00 -2.35 -37.24 16 15 C -0.24 -14.66 10.28 84.03 0.86 -13.80 16 16 H 0.09 5.07 7.83 -2.91 -0.02 5.05 16 17 C -0.07 -4.64 5.49 84.86 0.47 -4.17 16 18 N -0.95 -64.76 10.31 21.65 0.22 -64.53 16 19 Si 0.98 49.34 29.55 68.60 2.03 51.37 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 22 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.13 5.46 6.70 86.86 0.58 6.04 16 24 C -0.09 -3.03 3.27 -9.40 -0.03 -3.06 16 25 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 26 C -0.13 -2.95 9.29 71.98 0.67 -2.28 16 27 N -0.60 -15.63 2.79 -792.18 -2.21 -17.84 16 28 C 0.51 16.80 7.30 87.66 0.64 17.44 16 29 C -0.16 -3.16 9.67 71.24 0.69 -2.47 16 30 O -0.59 -28.09 16.72 -3.05 -0.05 -28.14 16 31 C 0.08 1.23 6.00 86.86 0.52 1.75 16 32 H 0.04 0.40 8.11 -2.39 -0.02 0.38 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.50 7.82 -2.39 -0.02 1.48 16 37 H 0.41 11.10 8.56 -92.71 -0.79 10.30 16 38 H 0.01 0.62 7.27 -2.39 -0.02 0.60 16 39 H -0.02 -1.49 7.51 -2.39 -0.02 -1.51 16 40 H 0.24 16.26 8.31 -92.70 -0.77 15.48 16 41 H 0.02 1.00 8.04 -2.39 -0.02 0.98 16 42 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.12 1.34 7.18 -2.39 -0.02 1.32 16 49 H 0.10 1.17 7.55 -2.38 -0.02 1.15 16 50 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -97.36 402.35 1.14 -96.22 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.14 Total: 19.70 kcal Atomic # 6 Polarization: 33.02 SS G_CDS: 7.21 Total: 40.23 kcal Atomic # 7 Polarization: -139.42 SS G_CDS: -6.56 Total: -145.99 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -1.66 Total: -61.53 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -97.36 1.14 -96.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080203677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.861 kcal (2) G-P(sol) polarization free energy of solvation -97.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds