Wall clock time and date at job start Tue Mar 31 2020 23:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99967 * 2 1 4 4 H 1.08998 * 110.63930 * 26.86405 * 3 2 1 5 5 C 1.54322 * 110.87672 * 263.61132 * 3 2 1 6 6 N 1.47016 * 107.27377 * 219.37377 * 5 3 2 7 7 C 1.36938 * 125.64765 * 178.98620 * 6 5 3 8 8 H 1.08005 * 119.99874 * 179.97438 * 7 6 5 9 9 C 1.38807 * 120.00018 * 359.97438 * 7 6 5 10 10 N 1.31623 * 120.00332 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00003 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47111 * 59.99453 * 11 9 7 13 13 H 1.48501 * 109.47115 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46675 * 299.99354 * 11 9 7 15 15 C 1.47422 * 108.70381 * 358.93862 * 6 5 3 16 16 C 1.54913 * 104.83085 * 24.12994 * 15 6 5 17 17 H 1.08998 * 111.03398 * 81.08012 * 16 15 6 18 18 N 1.46498 * 111.00080 * 204.91274 * 16 15 6 19 19 C 1.34775 * 120.00335 * 267.18971 * 18 16 15 20 20 O 1.21350 * 119.99978 * 0.02562 * 19 18 16 21 21 C 1.49451 * 120.00282 * 180.02562 * 19 18 16 22 22 O 1.21346 * 119.99658 * 353.23733 * 21 19 18 23 23 N 1.34775 * 119.99839 * 173.23213 * 21 19 18 24 24 C 1.46923 * 120.63345 * 351.34353 * 23 21 19 25 25 C 1.53199 * 108.77278 * 233.62949 * 24 23 21 26 26 C 1.53041 * 109.31164 * 305.36022 * 25 24 23 27 27 C 1.53044 * 109.53508 * 61.36946 * 26 25 24 28 28 H 1.08994 * 109.52275 * 58.59939 * 27 26 25 29 29 C 1.53001 * 109.49589 * 178.68196 * 27 26 25 30 30 C 1.46924 * 120.62825 * 171.36241 * 23 21 19 31 31 H 1.09001 * 109.46894 * 299.99707 * 1 2 3 32 32 H 1.09003 * 109.47374 * 59.99690 * 1 2 3 33 33 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.87966 * 338.79189 * 5 3 2 35 35 H 1.09008 * 109.88028 * 99.95612 * 5 3 2 36 36 H 0.96996 * 119.99915 * 180.02562 * 10 9 7 37 37 H 1.09000 * 110.36975 * 265.29291 * 15 6 5 38 38 H 1.09001 * 110.36839 * 142.96938 * 15 6 5 39 39 H 0.97002 * 120.00077 * 87.20205 * 18 16 15 40 40 H 1.09001 * 109.58801 * 353.41381 * 24 23 21 41 41 H 1.08995 * 109.59239 * 113.69655 * 24 23 21 42 42 H 1.08997 * 109.49823 * 65.31952 * 25 24 23 43 43 H 1.08999 * 109.49454 * 185.41313 * 25 24 23 44 44 H 1.08997 * 109.46178 * 301.35004 * 26 25 24 45 45 H 1.09000 * 109.45836 * 181.38391 * 26 25 24 46 46 H 1.08999 * 109.47002 * 179.83776 * 29 27 26 47 47 H 1.09002 * 109.46953 * 59.83288 * 29 27 26 48 48 H 1.08999 * 109.46856 * 299.83580 * 29 27 26 49 49 H 1.08998 * 109.59075 * 6.58083 * 30 23 21 50 50 H 1.09005 * 109.58741 * 246.15615 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7426 -1.4329 6 7 3.6668 2.4501 -1.3549 7 6 4.3514 2.9807 -2.4155 8 1 5.2930 3.4843 -2.2530 9 6 3.8354 2.8713 -3.6994 10 7 2.6882 2.2572 -3.8976 11 14 4.7697 3.5945 -5.1464 12 1 6.1068 2.9555 -5.2414 13 1 4.0122 3.3453 -6.3991 14 1 4.9329 5.0573 -4.9488 15 6 4.0970 2.4947 0.0545 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3652 0.5369 18 7 3.2165 1.5209 2.1637 19 6 4.1466 1.0686 3.0279 20 8 5.1211 0.4751 2.6146 21 6 3.9778 1.2978 4.4950 22 8 3.0708 1.9949 4.8998 23 7 4.8330 0.7302 5.3685 24 6 5.8161 -0.2633 4.9154 25 6 5.6684 -1.5274 5.7682 26 6 5.7863 -1.1562 7.2482 27 6 4.6633 -0.1865 7.6235 28 1 3.6982 -0.6508 7.4212 29 6 4.7624 0.1584 9.1109 30 6 4.7996 1.0928 6.7919 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.4775 0.8666 -2.0743 35 1 1.6136 2.4099 -1.8267 36 1 2.3278 2.1805 -4.7948 37 1 3.7840 3.4307 0.5172 38 1 5.1786 2.3789 0.1248 39 1 2.4376 1.9955 2.4941 40 1 5.6348 -0.5057 3.8683 41 1 6.8222 0.1405 5.0280 42 1 4.6941 -1.9795 5.5828 43 1 6.4544 -2.2361 5.5072 44 1 6.7509 -0.6817 7.4279 45 1 5.7061 -2.0574 7.8561 46 1 3.9642 0.8513 9.3771 47 1 5.7282 0.6216 9.3129 48 1 4.6653 -0.7521 9.7022 49 1 3.9477 1.7453 6.9829 50 1 5.7230 1.6062 7.0599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082208322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:57 Heat of formation + Delta-G solvation = -73.667001 kcal Electronic energy + Delta-G solvation = -30719.605661 eV Core-core repulsion = 26555.334529 eV Total energy + Delta-G solvation = -4164.271132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02078 -39.29009 -38.15844 -37.78670 -35.99548 -34.56060 -33.65614 -32.12585 -31.79054 -28.93991 -27.78693 -27.16054 -26.21334 -26.11411 -24.50603 -23.09197 -22.56220 -20.80272 -20.61506 -20.17422 -19.69876 -17.79170 -17.15869 -16.90016 -16.46911 -15.97265 -15.59778 -15.41195 -15.26538 -14.73817 -14.60315 -14.40634 -14.30015 -14.15068 -13.95315 -13.67433 -13.29447 -13.26412 -12.92555 -12.85026 -12.50468 -12.29652 -12.07537 -11.93115 -11.66528 -11.57795 -11.36429 -11.27260 -11.16588 -11.03901 -10.83962 -10.81688 -10.78425 -10.70291 -10.19645 -10.04372 -9.82506 -9.27139 -9.25201 -8.91471 -8.80870 -8.61974 -6.92415 -5.75417 -3.10961 1.41339 2.27189 3.18471 3.40009 3.42928 3.44838 3.46502 4.09298 4.26237 4.41574 4.45966 4.51113 4.55963 4.77456 5.01548 5.05116 5.10924 5.19701 5.27069 5.35542 5.37849 5.42521 5.45801 5.49366 5.56298 5.59308 5.64656 5.66195 5.71909 5.76723 5.78389 5.83133 5.86504 5.92717 5.97004 6.07256 6.10566 6.19602 6.44395 6.53063 6.72599 6.94412 7.20228 7.31975 7.44983 7.68159 7.71943 7.82968 8.04467 8.18011 9.14820 9.74786 10.37308 11.35905 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.002531 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.389832 B =11058.880329 C =11758.245576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.065 0.935 5 C 0.166 3.834 6 N -0.599 5.599 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.916 3.084 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.127 3.873 17 H 0.113 0.887 18 N -0.680 5.680 19 C 0.509 3.491 20 O -0.511 6.511 21 C 0.511 3.489 22 O -0.525 6.525 23 N -0.583 5.583 24 C 0.067 3.933 25 C -0.136 4.136 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.075 0.925 29 C -0.145 4.145 30 C 0.112 3.888 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.254 0.746 37 H 0.026 0.974 38 H 0.052 0.948 39 H 0.409 0.591 40 H 0.143 0.857 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -6.296 22.868 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.083 0.917 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.569 5.569 11 Si 0.746 3.254 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.022 3.978 17 H 0.130 0.870 18 N -0.330 5.330 19 C 0.290 3.710 20 O -0.388 6.388 21 C 0.294 3.706 22 O -0.401 6.401 23 N -0.317 5.317 24 C -0.054 4.054 25 C -0.174 4.174 26 C -0.154 4.154 27 C -0.126 4.126 28 H 0.093 0.907 29 C -0.203 4.203 30 C -0.010 4.010 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.245 0.755 40 H 0.160 0.840 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.112 0.888 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.369 -6.493 22.517 23.474 hybrid contribution -0.128 0.795 -0.505 0.951 sum 1.240 -5.698 22.012 22.771 Atomic orbital electron populations 1.22725 0.81569 1.02130 0.99872 1.87894 1.19239 1.27419 1.95044 1.23864 0.92748 0.84295 0.99467 0.91663 1.21570 0.88284 0.97289 0.88828 1.44238 1.21507 1.66377 1.00600 1.19020 1.02476 1.29630 0.84688 0.90140 1.24824 0.97410 1.00601 0.97424 1.69922 1.19230 1.47004 1.20781 0.86146 0.78857 0.78713 0.81718 1.21025 1.21571 1.21109 1.21824 0.97791 0.93664 0.86395 1.22628 0.97181 1.01609 0.76339 0.86954 1.45799 1.24215 1.55889 1.07123 1.20002 0.83797 0.80170 0.87081 1.90501 1.29424 1.40411 1.78511 1.20218 0.82074 0.80832 0.87507 1.90734 1.30936 1.38817 1.79611 1.47928 1.34798 1.41119 1.07823 1.22906 0.91606 0.87188 1.03697 1.21956 1.02790 0.97705 0.94953 1.21629 0.98440 0.99042 0.96309 1.21502 0.99957 0.95945 0.95190 0.90668 1.21766 1.02085 1.01775 0.94634 1.21802 1.03319 0.97020 0.78892 0.94713 0.93558 0.90179 0.91801 0.93170 0.93547 0.95672 0.92941 0.75531 0.83974 0.91310 0.91613 0.90382 0.91686 0.91693 0.92330 0.92419 0.92243 0.88811 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.88 10.44 -35.23 -0.37 -7.25 16 3 C 0.06 1.04 3.09 -24.90 -0.08 0.96 16 4 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 5 C 0.17 3.97 5.15 -3.07 -0.02 3.95 16 6 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 9 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -26.73 10.31 55.49 0.57 -26.16 16 11 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.13 2.74 6.93 -2.53 -0.02 2.72 16 16 C 0.13 2.34 3.15 -65.78 -0.21 2.13 16 17 H 0.11 2.27 7.54 -51.93 -0.39 1.88 16 18 N -0.68 -10.51 5.19 -52.16 -0.27 -10.78 16 19 C 0.51 7.82 7.74 -11.59 -0.09 7.73 16 20 O -0.51 -8.58 12.82 5.50 0.07 -8.51 16 21 C 0.51 7.19 7.73 -11.59 -0.09 7.10 16 22 O -0.52 -8.15 15.93 5.50 0.09 -8.06 16 23 N -0.58 -6.78 2.97 -173.28 -0.51 -7.30 16 24 C 0.07 0.71 5.98 -3.71 -0.02 0.69 16 25 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 26 C -0.12 -0.82 5.17 -26.69 -0.14 -0.96 16 27 C -0.11 -0.81 2.87 -90.50 -0.26 -1.07 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 C -0.14 -0.85 9.20 37.16 0.34 -0.50 16 30 C 0.11 1.05 5.73 -3.71 -0.02 1.02 16 31 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.73 7.30 -51.93 -0.38 1.36 16 35 H 0.05 1.30 7.51 -51.92 -0.39 0.91 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 5.71 8.06 -40.82 -0.33 5.38 16 40 H 0.14 1.82 4.32 -54.77 -0.24 1.58 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.97 7.01 -51.93 -0.36 0.60 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -31.39 395.00 -8.36 -39.75 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.37 Total: 3.92 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 0.09 Total: 17.27 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.79 Total: -60.02 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.21 Total: -23.82 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.39 -8.36 -39.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082208322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.917 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds