Wall clock time and date at job start Tue Mar 31 2020 23:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99820 * 2 1 4 4 C 1.53001 * 109.47108 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47601 * 64.99876 * 4 3 2 6 6 C 1.46768 * 124.34879 * 89.99607 * 5 4 3 7 7 C 1.54480 * 105.55098 * 197.08340 * 6 5 4 8 8 H 1.08996 * 110.97117 * 92.69632 * 7 6 5 9 9 C 1.50700 * 110.97066 * 216.42441 * 7 6 5 10 10 O 1.21287 * 119.99902 * 359.97438 * 9 7 6 11 11 N 1.34769 * 120.00155 * 180.02562 * 9 7 6 12 12 C 1.47027 * 125.65098 * 179.71899 * 11 9 7 13 13 C 1.54335 * 107.26732 * 178.85035 * 12 11 9 14 14 H 1.09000 * 110.66890 * 96.52141 * 13 12 11 15 15 C 1.52999 * 110.84734 * 219.66923 * 13 12 11 16 16 C 1.55157 * 103.01893 * 338.13673 * 13 12 11 17 17 H 1.09004 * 111.03730 * 277.21857 * 16 13 12 18 18 N 1.46496 * 111.00302 * 153.38455 * 16 13 12 19 19 C 1.36943 * 119.99970 * 161.34862 * 18 16 13 20 20 H 1.07991 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99997 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99995 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47070 * 90.00180 * 23 21 19 25 25 H 1.48499 * 109.47391 * 209.99903 * 23 21 19 26 26 H 1.48492 * 109.47252 * 330.00478 * 23 21 19 27 27 C 1.47426 * 125.65010 * 0.02562 * 11 9 7 28 28 C 1.54631 * 101.76472 * 334.54015 * 7 6 5 29 29 C 1.34621 * 124.47196 * 270.02849 * 5 4 3 30 30 O 1.21286 * 124.90539 * 359.55259 * 29 5 4 31 31 H 1.08993 * 109.46907 * 299.99961 * 1 2 3 32 32 H 1.08997 * 109.46842 * 60.00377 * 1 2 3 33 33 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47077 * 60.00552 * 3 2 1 35 35 H 1.08996 * 109.47326 * 299.99944 * 3 2 1 36 36 H 1.09002 * 109.47341 * 304.99997 * 4 3 2 37 37 H 1.08998 * 109.47560 * 184.99877 * 4 3 2 38 38 H 1.09002 * 110.24468 * 78.03845 * 6 5 4 39 39 H 1.09002 * 110.24463 * 316.12602 * 6 5 4 40 40 H 1.09000 * 109.87915 * 298.39301 * 12 11 9 41 41 H 1.08994 * 109.88049 * 59.55715 * 12 11 9 42 42 H 1.09002 * 109.47274 * 173.68932 * 15 13 12 43 43 H 1.08998 * 109.47263 * 293.69303 * 15 13 12 44 44 H 1.09006 * 109.47242 * 53.69177 * 15 13 12 45 45 H 0.96998 * 120.00244 * 341.34480 * 18 16 13 46 46 H 0.97001 * 119.99887 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.36894 * 322.93847 * 27 11 9 48 48 H 1.09007 * 110.36537 * 85.14403 * 27 11 9 49 49 H 1.09000 * 110.48694 * 143.47575 * 28 7 6 50 50 H 1.08994 * 110.49106 * 266.12244 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.3110 1.3087 -2.4724 7 6 4.2856 0.2674 -3.6132 8 1 3.3045 0.2310 -4.0864 9 6 5.3611 0.5541 -4.6292 10 8 6.0994 1.5046 -4.4790 11 7 5.5019 -0.2451 -5.7052 12 6 6.5001 -0.0784 -6.7717 13 6 6.3020 -1.2386 -7.7700 14 1 5.6831 -0.9222 -8.6097 15 6 7.6498 -1.7689 -8.2631 16 6 5.5683 -2.3095 -6.9202 17 1 6.2752 -2.8911 -6.3284 18 7 4.7529 -3.1836 -7.7671 19 6 4.3376 -4.4005 -7.2957 20 1 4.6109 -4.7155 -6.2996 21 6 3.5645 -5.2285 -8.0979 22 7 3.2310 -4.8442 -9.3119 23 14 2.9986 -6.8886 -7.4553 24 1 1.6864 -6.7357 -6.7769 25 1 2.8620 -7.8380 -8.5890 26 1 3.9973 -7.4119 -6.4890 27 6 4.6764 -1.4277 -6.0111 28 6 4.5815 -1.0442 -2.8494 29 6 4.1250 -0.7609 -1.4351 30 8 3.9225 -1.6052 -0.5883 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8515 0.5683 0.8409 37 1 3.9785 2.1765 0.0889 38 1 5.3047 1.7483 -2.3849 39 1 3.5698 2.0867 -2.6553 40 1 6.3487 0.8764 -7.2752 41 1 7.5041 -0.1223 -6.3498 42 1 7.4891 -2.6555 -8.8764 43 1 8.1470 -1.0017 -8.8566 44 1 8.2736 -2.0273 -7.4073 45 1 4.5070 -2.9005 -8.6616 46 1 2.6911 -5.4230 -9.8726 47 1 4.4237 -1.9613 -5.0948 48 1 3.7698 -1.1312 -6.5388 49 1 4.0125 -1.8705 -3.2756 50 1 5.6487 -1.2646 -2.8688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082542020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:13 Heat of formation + Delta-G solvation = -93.383516 kcal Electronic energy + Delta-G solvation = -30662.430221 eV Core-core repulsion = 26497.304117 eV Total energy + Delta-G solvation = -4165.126104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92884 -39.56283 -37.99474 -37.70163 -36.14403 -34.17396 -33.62198 -32.41945 -30.77416 -29.54800 -27.85667 -27.56414 -26.69264 -26.24862 -24.17559 -23.54862 -22.64472 -21.35587 -19.97063 -19.63616 -18.98754 -17.47065 -17.22112 -17.11978 -16.74510 -16.16529 -15.89563 -15.69203 -15.41713 -15.16245 -14.69893 -14.43874 -14.10696 -13.80391 -13.65006 -13.32654 -13.27840 -13.15529 -13.01937 -12.94626 -12.74009 -12.65120 -12.26445 -12.04834 -11.93622 -11.71950 -11.57930 -11.39982 -11.37778 -11.11623 -11.04184 -10.78369 -10.65240 -10.29156 -10.08867 -9.95805 -9.90325 -9.78936 -9.60193 -9.05748 -8.82023 -8.45656 -7.13591 -5.89139 -3.20298 2.54813 2.65174 2.75856 3.10716 3.38562 3.45391 3.45772 3.56078 4.12731 4.25731 4.45773 4.56829 4.73789 4.78812 4.81715 4.87285 4.98337 5.04779 5.06267 5.10685 5.13861 5.15694 5.16223 5.32818 5.43511 5.48424 5.49842 5.54491 5.58904 5.61874 5.73694 5.75976 5.77722 5.87203 5.96107 6.15268 6.19247 6.29810 6.37733 6.40209 6.43291 6.55734 6.80921 6.92837 7.02527 7.60342 7.65490 8.15556 8.19244 8.28370 9.40728 9.93232 10.27923 11.32584 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.003324 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.607579 B = 8420.972047 C =10637.881823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.130 3.870 5 N -0.621 5.621 6 C 0.120 3.880 7 C -0.118 4.118 8 H 0.116 0.884 9 C 0.539 3.461 10 O -0.550 6.550 11 N -0.607 5.607 12 C 0.117 3.883 13 C -0.114 4.114 14 H 0.084 0.916 15 C -0.135 4.135 16 C 0.178 3.822 17 H 0.066 0.934 18 N -0.710 5.710 19 C -0.250 4.250 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.065 3.935 28 C -0.144 4.144 29 C 0.527 3.473 30 O -0.514 6.514 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.115 0.885 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 15.666 13.075 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.038 4.038 4 C 0.008 3.992 5 N -0.357 5.357 6 C -0.004 4.004 7 C -0.140 4.140 8 H 0.134 0.866 9 C 0.326 3.674 10 O -0.429 6.429 11 N -0.339 5.339 12 C -0.006 4.006 13 C -0.133 4.133 14 H 0.103 0.897 15 C -0.192 4.192 16 C 0.065 3.935 17 H 0.084 0.916 18 N -0.350 5.350 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.061 4.061 28 C -0.185 4.185 29 C 0.314 3.686 30 O -0.388 6.388 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.133 0.867 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.903 15.417 13.798 20.710 hybrid contribution -0.978 -0.474 -0.148 1.096 sum -0.075 14.944 13.650 20.239 Atomic orbital electron populations 1.22735 0.81305 1.02915 0.99530 1.88080 1.19312 1.26649 1.95256 1.23021 0.94547 0.85830 1.00399 1.21383 0.92080 0.99256 0.86477 1.48232 1.67725 1.07310 1.12422 1.21936 1.02758 0.93654 0.82007 1.22131 1.00281 0.96466 0.95083 0.86632 1.19673 0.84644 0.81855 0.81214 1.90677 1.46190 1.29654 1.76392 1.48474 1.34678 1.28791 1.22004 1.22002 0.92055 0.98681 0.87849 1.22488 0.98201 0.94988 0.97663 0.89726 1.21671 0.95236 1.01244 1.01081 1.21352 0.91367 0.89539 0.91223 0.91600 1.42296 1.60416 1.16901 1.15374 1.19231 1.26586 0.93327 0.98891 0.90908 1.24752 1.00505 0.98856 0.96163 1.69659 1.41904 1.37694 1.08360 0.86210 0.78748 0.83712 0.77635 1.21547 1.21726 1.20565 1.23706 0.95783 0.85290 1.01289 1.22387 1.04790 0.98047 0.93238 1.20716 0.76170 0.82066 0.89625 1.90736 1.50338 1.48975 1.48777 0.94341 0.94268 0.89569 0.92427 0.93107 0.89082 0.88713 0.89051 0.90223 0.91847 0.91499 0.91293 0.93172 0.92853 0.77836 0.93325 0.90768 0.90988 0.86671 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.37 -4.57 10.29 -35.23 -0.36 -4.93 16 3 C 0.04 0.35 6.28 37.16 0.23 0.58 16 4 C 0.13 1.16 6.34 -4.04 -0.03 1.14 16 5 N -0.62 -6.95 2.90 -172.35 -0.50 -7.45 16 6 C 0.12 1.20 6.70 -3.12 -0.02 1.18 16 7 C -0.12 -1.34 2.89 -90.14 -0.26 -1.60 16 8 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 9 C 0.54 7.45 7.10 -10.99 -0.08 7.37 16 10 O -0.55 -8.89 15.83 5.55 0.09 -8.80 16 11 N -0.61 -8.59 3.33 -170.51 -0.57 -9.16 16 12 C 0.12 1.59 6.48 -3.06 -0.02 1.57 16 13 C -0.11 -1.65 3.16 -88.78 -0.28 -1.93 16 14 H 0.08 1.27 7.99 -51.93 -0.42 0.85 16 15 C -0.13 -1.79 9.16 37.16 0.34 -1.45 16 16 C 0.18 3.09 3.14 -65.78 -0.21 2.88 16 17 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 18 N -0.71 -15.86 5.28 -51.35 -0.27 -16.13 16 19 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -26.41 13.06 55.49 0.72 -25.68 16 23 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.06 1.00 6.33 -2.53 -0.02 0.99 16 28 C -0.14 -1.78 5.37 -26.74 -0.14 -1.93 16 29 C 0.53 7.46 7.74 -10.77 -0.08 7.37 16 30 O -0.51 -9.25 17.52 5.55 0.10 -9.16 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.98 6.96 -51.93 -0.36 0.62 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.89 7.77 -51.93 -0.40 0.49 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.67 8.07 -51.93 -0.42 0.26 16 45 H 0.39 9.28 7.71 -40.82 -0.31 8.97 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 47 H 0.07 1.11 5.42 -51.93 -0.28 0.83 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.12 1.45 6.78 -51.93 -0.35 1.10 16 50 H 0.11 1.32 7.89 -51.93 -0.41 0.91 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -32.69 404.68 -7.82 -40.50 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.41 Total: 7.50 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 0.31 Total: 10.81 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.61 Total: -58.42 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.18 Total: -22.89 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.69 -7.82 -40.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.881 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds