Wall clock time and date at job start Tue Mar 31 2020 23:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 114.00046 * 2 1 4 4 C 1.52998 * 109.47284 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47142 * 64.99955 * 4 3 2 6 6 C 1.46769 * 124.35329 * 269.99942 * 5 4 3 7 7 C 1.54476 * 105.47500 * 162.95796 * 6 5 4 8 8 H 1.08998 * 111.01011 * 267.28434 * 7 6 5 9 9 C 1.50702 * 110.96614 * 143.53449 * 7 6 5 10 10 O 1.21283 * 120.00262 * 6.17281 * 9 7 6 11 11 N 1.34777 * 119.99928 * 185.89187 * 9 7 6 12 12 C 1.47428 * 125.65051 * 180.27344 * 11 9 7 13 13 C 1.54910 * 104.83561 * 204.09492 * 12 11 9 14 14 H 1.08998 * 110.99936 * 81.06377 * 13 12 11 15 15 C 1.52993 * 111.00495 * 204.87920 * 13 12 11 16 16 C 1.55161 * 101.58019 * 322.99500 * 13 12 11 17 17 H 1.09000 * 110.71235 * 276.95806 * 16 13 12 18 18 N 1.46495 * 110.71753 * 153.86449 * 16 13 12 19 19 C 1.36942 * 119.99667 * 154.99364 * 18 16 13 20 20 H 1.08003 * 120.00173 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00002 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46615 * 90.00451 * 23 21 19 25 25 H 1.48499 * 109.47025 * 210.00073 * 23 21 19 26 26 H 1.48497 * 109.47080 * 330.00385 * 23 21 19 27 27 C 1.47021 * 125.64880 * 359.97385 * 11 9 7 28 28 C 1.54631 * 101.76555 * 25.42190 * 7 6 5 29 29 C 1.34420 * 124.34976 * 89.97249 * 5 4 3 30 30 O 1.21282 * 124.94154 * 0.40012 * 29 5 4 31 31 H 1.08999 * 109.46907 * 299.99990 * 1 2 3 32 32 H 1.08999 * 109.46964 * 60.00213 * 1 2 3 33 33 H 1.08999 * 109.46585 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46927 * 59.99949 * 3 2 1 35 35 H 1.09000 * 109.46808 * 300.00291 * 3 2 1 36 36 H 1.09002 * 109.46956 * 305.00504 * 4 3 2 37 37 H 1.08992 * 109.47059 * 184.99894 * 4 3 2 38 38 H 1.09000 * 110.24081 * 43.96321 * 6 5 4 39 39 H 1.08993 * 110.24741 * 281.96321 * 6 5 4 40 40 H 1.09000 * 110.36749 * 322.93503 * 12 11 9 41 41 H 1.09002 * 110.36027 * 85.14728 * 12 11 9 42 42 H 1.09007 * 109.47043 * 58.54595 * 15 13 12 43 43 H 1.08998 * 109.47520 * 178.54985 * 15 13 12 44 44 H 1.08997 * 109.47354 * 298.55054 * 15 13 12 45 45 H 0.97002 * 120.00163 * 334.99978 * 18 16 13 46 46 H 0.97003 * 120.00310 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.88043 * 298.38854 * 27 11 9 48 48 H 1.09000 * 109.88498 * 59.55272 * 27 11 9 49 49 H 1.08994 * 110.48942 * 93.87213 * 28 7 6 50 50 H 1.08998 * 110.48637 * 216.52156 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1393 -0.8815 -1.4461 7 6 4.1816 -1.0885 -2.9763 8 1 3.1874 -1.3002 -3.3697 9 6 5.1491 -2.1833 -3.3458 10 8 5.6816 -2.8408 -2.4769 11 7 5.4183 -2.4355 -4.6421 12 6 6.3355 -3.4755 -5.1427 13 6 6.7709 -2.9793 -6.5441 14 1 7.5674 -2.2394 -6.4664 15 6 7.1982 -4.1497 -7.4320 16 6 5.4606 -2.3331 -7.0666 17 1 4.8005 -3.0894 -7.4913 18 7 5.7544 -1.2910 -8.0535 19 6 4.8179 -0.9557 -8.9946 20 1 3.8625 -1.4591 -9.0090 21 6 5.0960 0.0322 -9.9294 22 7 6.2601 0.6460 -9.9114 23 14 3.8182 0.4901 -11.2126 24 1 2.9563 1.5788 -10.6863 25 1 4.5007 0.9525 -12.4478 26 1 2.9819 -0.6968 -11.5239 27 6 4.8411 -1.7232 -5.7915 28 6 4.6893 0.2873 -3.4667 29 6 4.2843 1.2453 -2.3681 30 8 4.2425 2.4522 -2.4794 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.6887 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8508 0.5685 0.8427 37 1 3.9784 2.1766 0.0902 38 1 3.2932 -1.4176 -1.0163 39 1 5.0710 -1.2208 -0.9936 40 1 7.2011 -3.5658 -4.4864 41 1 5.8181 -4.4318 -5.2208 42 1 6.3712 -4.8533 -7.5286 43 1 7.4743 -3.7760 -8.4179 44 1 8.0534 -4.6539 -6.9819 45 1 6.6124 -0.8386 -8.0403 46 1 6.4544 1.3366 -10.5644 47 1 3.7591 -1.8542 -5.8035 48 1 5.0875 -0.6630 -5.7324 49 1 5.7731 0.2751 -3.5818 50 1 4.2080 0.5588 -4.4062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082542021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:17 Heat of formation + Delta-G solvation = -95.671632 kcal Electronic energy + Delta-G solvation = -30679.149378 eV Core-core repulsion = 26513.924054 eV Total energy + Delta-G solvation = -4165.225324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.94447 -39.57436 -38.09761 -37.70122 -36.16288 -34.16273 -33.63107 -32.38974 -30.76522 -29.56292 -27.81695 -27.55056 -26.80285 -26.19985 -24.13866 -23.47684 -22.75756 -21.31538 -20.05524 -19.58995 -18.95038 -17.38157 -17.19857 -17.15128 -16.75273 -16.15698 -16.08839 -15.71675 -15.41186 -15.16649 -14.73978 -14.49106 -13.95700 -13.88858 -13.67496 -13.52948 -13.29916 -13.13604 -12.99651 -12.66329 -12.63621 -12.35598 -12.30426 -12.22935 -12.11842 -11.76192 -11.52811 -11.41894 -11.27375 -11.17107 -11.04168 -10.77755 -10.63437 -10.29010 -10.14390 -10.04216 -9.95982 -9.78562 -9.60963 -9.03607 -8.83371 -8.42004 -7.13686 -5.88334 -3.19598 2.50308 2.64973 2.76839 3.13402 3.37744 3.43262 3.44999 3.46074 4.16530 4.28887 4.48880 4.59553 4.71749 4.75569 4.88249 4.90420 4.95057 5.06287 5.08494 5.09289 5.13654 5.19717 5.24992 5.37497 5.43117 5.52539 5.52957 5.57229 5.58643 5.70106 5.73853 5.78582 5.85034 5.88173 5.95215 6.14809 6.20859 6.31450 6.36664 6.44040 6.48764 6.57336 6.76866 6.81030 6.99476 7.59436 7.68831 8.08337 8.21194 8.28937 9.41016 9.94083 10.28703 11.33328 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.003125 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.630690 B = 8958.882960 C =10502.653614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.042 3.958 4 C 0.130 3.870 5 N -0.615 5.615 6 C 0.124 3.876 7 C -0.117 4.117 8 H 0.116 0.884 9 C 0.539 3.461 10 O -0.549 6.549 11 N -0.607 5.607 12 C 0.114 3.886 13 C -0.115 4.115 14 H 0.083 0.917 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.069 0.931 18 N -0.710 5.710 19 C -0.251 4.251 20 H 0.072 0.928 21 C -0.006 4.006 22 N -0.927 5.927 23 Si 0.907 3.093 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.065 3.935 28 C -0.145 4.145 29 C 0.521 3.479 30 O -0.531 6.531 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 -4.939 18.765 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.036 4.036 4 C 0.008 3.992 5 N -0.349 5.349 6 C 0.001 3.999 7 C -0.139 4.139 8 H 0.134 0.866 9 C 0.327 3.673 10 O -0.428 6.428 11 N -0.340 5.340 12 C -0.009 4.009 13 C -0.135 4.135 14 H 0.102 0.898 15 C -0.190 4.190 16 C 0.065 3.935 17 H 0.087 0.913 18 N -0.350 5.350 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.203 4.203 22 N -0.574 5.574 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.061 4.061 28 C -0.185 4.185 29 C 0.309 3.691 30 O -0.407 6.407 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.127 0.873 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.231 -4.722 19.142 20.677 hybrid contribution -0.840 0.769 -0.772 1.376 sum -7.071 -3.953 18.370 20.076 Atomic orbital electron populations 1.22736 0.81005 1.02790 0.99929 1.87882 1.19732 1.27591 1.95428 1.23064 0.94345 0.85237 1.00933 1.21408 0.92022 0.99836 0.85942 1.48226 1.66735 1.07911 1.12029 1.21964 1.03944 0.80093 0.93916 1.22145 1.00621 0.94065 0.97074 0.86591 1.19688 0.82180 0.84134 0.81313 1.90681 1.53101 1.51138 1.47900 1.48482 1.44593 1.35749 1.05169 1.22282 0.93053 0.90676 0.94892 1.22662 0.99272 0.98429 0.93141 0.89831 1.21592 1.00496 0.96836 1.00092 1.21243 0.93232 0.91199 0.87840 0.91338 1.42358 1.18103 1.41938 1.32561 1.19225 0.95990 1.16120 1.06826 0.90983 1.24761 0.97030 0.98980 0.99519 1.69652 1.21732 1.27916 1.38133 0.86211 0.80579 0.78321 0.81165 1.21567 1.21726 1.20667 1.23527 0.97988 0.97993 0.86572 1.22400 1.04396 0.92287 0.99408 1.20867 0.75893 0.88212 0.84118 1.90731 1.53772 1.13583 1.82629 0.94197 0.94056 0.89574 0.92237 0.92676 0.89292 0.88344 0.89031 0.89455 0.90897 0.91544 0.92811 0.91397 0.93217 0.77843 0.93285 0.92099 0.90329 0.87284 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.76 9.89 -35.23 -0.35 -4.11 16 3 C 0.04 0.37 6.28 37.16 0.23 0.60 16 4 C 0.13 1.20 6.32 -4.04 -0.03 1.18 16 5 N -0.61 -7.14 2.88 -172.42 -0.50 -7.64 16 6 C 0.12 1.38 6.59 -3.12 -0.02 1.36 16 7 C -0.12 -1.39 3.03 -90.14 -0.27 -1.67 16 8 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 9 C 0.54 7.70 7.13 -10.98 -0.08 7.62 16 10 O -0.55 -9.17 15.83 5.55 0.09 -9.08 16 11 N -0.61 -8.71 3.33 -170.51 -0.57 -9.28 16 12 C 0.11 1.56 6.37 -2.53 -0.02 1.54 16 13 C -0.11 -1.69 3.27 -88.47 -0.29 -1.98 16 14 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 15 C -0.13 -1.76 9.30 37.15 0.35 -1.42 16 16 C 0.18 3.07 3.08 -66.09 -0.20 2.87 16 17 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 18 N -0.71 -15.89 5.15 -51.64 -0.27 -16.15 16 19 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 20 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 23 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.07 1.00 5.86 -3.06 -0.02 0.99 16 28 C -0.14 -1.88 4.96 -26.74 -0.13 -2.01 16 29 C 0.52 7.41 8.02 -10.86 -0.09 7.32 16 30 O -0.53 -9.39 17.59 5.56 0.10 -9.29 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.89 7.92 -51.93 -0.41 0.48 16 38 H 0.09 0.96 7.44 -51.93 -0.39 0.58 16 39 H 0.09 1.05 7.06 -51.93 -0.37 0.68 16 40 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 41 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 42 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.39 9.39 7.76 -40.82 -0.32 9.08 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.31 6.09 -51.93 -0.32 0.99 16 49 H 0.11 1.46 7.89 -51.93 -0.41 1.05 16 50 H 0.12 1.55 7.16 -51.93 -0.37 1.18 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -31.77 404.30 -7.83 -39.61 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.44 Total: 8.40 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 0.30 Total: 10.98 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.61 Total: -58.89 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.16 Total: -22.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.77 -7.83 -39.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.065 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds