Wall clock time and date at job start Tue Mar 31 2020 23:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 114.00046 * 2 1 4 4 C 1.52998 * 109.47284 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47142 * 64.99955 * 4 3 2 6 6 C 1.46769 * 124.35329 * 269.99942 * 5 4 3 7 7 C 1.54476 * 105.47500 * 162.95796 * 6 5 4 8 8 H 1.08998 * 111.01011 * 267.28434 * 7 6 5 9 9 C 1.50702 * 110.96614 * 143.53449 * 7 6 5 10 10 O 1.21283 * 120.00262 * 6.17281 * 9 7 6 11 11 N 1.34777 * 119.99928 * 185.89187 * 9 7 6 12 12 C 1.47428 * 125.65051 * 180.27344 * 11 9 7 13 13 C 1.54910 * 104.83561 * 204.09492 * 12 11 9 14 14 H 1.08998 * 110.99936 * 81.06377 * 13 12 11 15 15 C 1.52993 * 111.00495 * 204.87920 * 13 12 11 16 16 C 1.55161 * 101.58019 * 322.99500 * 13 12 11 17 17 H 1.09000 * 110.71235 * 276.95806 * 16 13 12 18 18 N 1.46495 * 110.71753 * 153.86449 * 16 13 12 19 19 C 1.36942 * 119.99667 * 154.99364 * 18 16 13 20 20 H 1.08003 * 120.00173 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00002 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46615 * 90.00451 * 23 21 19 25 25 H 1.48499 * 109.47025 * 210.00073 * 23 21 19 26 26 H 1.48497 * 109.47080 * 330.00385 * 23 21 19 27 27 C 1.47021 * 125.64880 * 359.97385 * 11 9 7 28 28 C 1.54631 * 101.76555 * 25.42190 * 7 6 5 29 29 C 1.34420 * 124.34976 * 89.97249 * 5 4 3 30 30 O 1.21282 * 124.94154 * 0.40012 * 29 5 4 31 31 H 1.08999 * 109.46907 * 299.99990 * 1 2 3 32 32 H 1.08999 * 109.46964 * 60.00213 * 1 2 3 33 33 H 1.08999 * 109.46585 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46927 * 59.99949 * 3 2 1 35 35 H 1.09000 * 109.46808 * 300.00291 * 3 2 1 36 36 H 1.09002 * 109.46956 * 305.00504 * 4 3 2 37 37 H 1.08992 * 109.47059 * 184.99894 * 4 3 2 38 38 H 1.09000 * 110.24081 * 43.96321 * 6 5 4 39 39 H 1.08993 * 110.24741 * 281.96321 * 6 5 4 40 40 H 1.09000 * 110.36749 * 322.93503 * 12 11 9 41 41 H 1.09002 * 110.36027 * 85.14728 * 12 11 9 42 42 H 1.09007 * 109.47043 * 58.54595 * 15 13 12 43 43 H 1.08998 * 109.47520 * 178.54985 * 15 13 12 44 44 H 1.08997 * 109.47354 * 298.55054 * 15 13 12 45 45 H 0.97002 * 120.00163 * 334.99978 * 18 16 13 46 46 H 0.97003 * 120.00310 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.88043 * 298.38854 * 27 11 9 48 48 H 1.09000 * 109.88498 * 59.55272 * 27 11 9 49 49 H 1.08994 * 110.48942 * 93.87213 * 28 7 6 50 50 H 1.08998 * 110.48637 * 216.52156 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1393 -0.8815 -1.4461 7 6 4.1816 -1.0885 -2.9763 8 1 3.1874 -1.3002 -3.3697 9 6 5.1491 -2.1833 -3.3458 10 8 5.6816 -2.8408 -2.4769 11 7 5.4183 -2.4355 -4.6421 12 6 6.3355 -3.4755 -5.1427 13 6 6.7709 -2.9793 -6.5441 14 1 7.5674 -2.2394 -6.4664 15 6 7.1982 -4.1497 -7.4320 16 6 5.4606 -2.3331 -7.0666 17 1 4.8005 -3.0894 -7.4913 18 7 5.7544 -1.2910 -8.0535 19 6 4.8179 -0.9557 -8.9946 20 1 3.8625 -1.4591 -9.0090 21 6 5.0960 0.0322 -9.9294 22 7 6.2601 0.6460 -9.9114 23 14 3.8182 0.4901 -11.2126 24 1 2.9563 1.5788 -10.6863 25 1 4.5007 0.9525 -12.4478 26 1 2.9819 -0.6968 -11.5239 27 6 4.8411 -1.7232 -5.7915 28 6 4.6893 0.2873 -3.4667 29 6 4.2843 1.2453 -2.3681 30 8 4.2425 2.4522 -2.4794 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.6887 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8508 0.5685 0.8427 37 1 3.9784 2.1766 0.0902 38 1 3.2932 -1.4176 -1.0163 39 1 5.0710 -1.2208 -0.9936 40 1 7.2011 -3.5658 -4.4864 41 1 5.8181 -4.4318 -5.2208 42 1 6.3712 -4.8533 -7.5286 43 1 7.4743 -3.7760 -8.4179 44 1 8.0534 -4.6539 -6.9819 45 1 6.6124 -0.8386 -8.0403 46 1 6.4544 1.3366 -10.5644 47 1 3.7591 -1.8542 -5.8035 48 1 5.0875 -0.6630 -5.7324 49 1 5.7731 0.2751 -3.5818 50 1 4.2080 0.5588 -4.4062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082542021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:16 Heat of formation + Delta-G solvation = -116.978848 kcal Electronic energy + Delta-G solvation = -30680.073328 eV Core-core repulsion = 26513.924054 eV Total energy + Delta-G solvation = -4166.149275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03150 -40.74529 -39.00342 -38.79975 -37.29169 -35.83546 -34.65360 -33.66390 -32.44193 -30.41614 -29.14531 -28.78696 -27.65511 -27.04135 -25.86614 -24.41862 -23.82124 -22.61379 -21.37110 -20.62435 -20.09386 -19.06749 -18.43448 -18.14167 -17.53342 -17.28788 -17.22193 -16.64749 -16.40804 -16.23137 -16.15816 -15.59917 -15.36150 -15.28100 -14.82863 -14.76435 -14.54043 -14.26035 -14.17901 -14.02009 -13.54637 -13.43022 -13.30140 -13.13759 -13.01557 -12.89196 -12.84334 -12.84198 -12.48066 -12.43431 -12.16503 -12.13706 -12.07302 -11.99155 -11.64772 -11.40369 -11.23007 -10.94447 -10.78310 -10.64389 -9.80791 -9.63133 -9.01932 -7.91329 -5.20318 1.38509 1.49649 1.51704 1.52499 1.60043 1.77740 2.04242 2.59143 2.81937 3.09123 3.27410 3.40884 3.48495 3.76926 3.81282 3.86408 3.93807 4.01412 4.08300 4.13873 4.28167 4.32002 4.39417 4.47408 4.50456 4.51661 4.53374 4.55684 4.59126 4.67010 4.72240 4.76433 4.78307 4.87775 4.88486 4.94401 4.96421 5.14421 5.19452 5.27163 5.37211 5.46201 5.52445 5.59406 5.93572 6.18108 6.29313 6.49135 6.99668 7.05386 7.37518 8.10173 8.32868 9.31501 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.003125 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.630690 B = 8958.882960 C =10502.653614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.606 5.606 6 C 0.131 3.869 7 C -0.108 4.108 8 H 0.135 0.865 9 C 0.542 3.458 10 O -0.570 6.570 11 N -0.607 5.607 12 C 0.117 3.883 13 C -0.106 4.106 14 H 0.069 0.931 15 C -0.127 4.127 16 C 0.170 3.830 17 H 0.073 0.927 18 N -0.721 5.721 19 C -0.236 4.236 20 H 0.082 0.918 21 C -0.070 4.070 22 N -0.967 5.967 23 Si 0.964 3.036 24 H -0.291 1.291 25 H -0.302 1.302 26 H -0.267 1.267 27 C 0.078 3.922 28 C -0.140 4.140 29 C 0.517 3.483 30 O -0.573 6.573 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.375 0.625 46 H 0.249 0.751 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -6.710 20.324 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.339 5.339 6 C 0.008 3.992 7 C -0.129 4.129 8 H 0.153 0.847 9 C 0.331 3.669 10 O -0.450 6.450 11 N -0.339 5.339 12 C -0.005 4.005 13 C -0.126 4.126 14 H 0.087 0.913 15 C -0.185 4.185 16 C 0.060 3.940 17 H 0.091 0.909 18 N -0.360 5.360 19 C -0.368 4.368 20 H 0.100 0.900 21 C -0.262 4.262 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.219 1.219 25 H -0.229 1.229 26 H -0.191 1.191 27 C -0.048 4.048 28 C -0.181 4.181 29 C 0.305 3.695 30 O -0.453 6.453 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.207 0.793 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.120 0.880 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.786 -6.569 20.757 23.122 hybrid contribution -0.369 1.218 -1.142 1.710 sum -8.156 -5.350 19.614 21.906 Atomic orbital electron populations 1.22877 0.79815 1.03706 1.00471 1.87842 1.21084 1.27866 1.95545 1.23007 0.93763 0.85173 1.01189 1.21667 0.92605 1.00209 0.85369 1.48318 1.65379 1.08026 1.12135 1.21953 1.04287 0.79678 0.93262 1.22130 1.00746 0.92385 0.97677 0.84744 1.19943 0.82016 0.84142 0.80799 1.90678 1.53981 1.52098 1.48281 1.48475 1.44619 1.35766 1.05049 1.22310 0.93281 0.91080 0.93825 1.22559 0.97489 0.98503 0.94082 0.91260 1.21551 1.01883 0.96437 0.98622 1.21452 0.94942 0.90140 0.87507 0.90928 1.42480 1.17125 1.42964 1.33394 1.19619 0.96377 1.14624 1.06196 0.90007 1.25462 0.98710 1.00056 1.02018 1.69800 1.23690 1.29061 1.39168 0.85274 0.78520 0.78184 0.78586 1.21857 1.22870 1.19135 1.23160 0.98571 0.97036 0.85995 1.22313 1.03921 0.92801 0.99034 1.21007 0.75693 0.87751 0.85034 1.90704 1.55866 1.15247 1.83441 0.92770 0.94414 0.88528 0.89795 0.94592 0.87110 0.88370 0.87647 0.89891 0.90621 0.89754 0.91537 0.93668 0.90988 0.79311 0.94206 0.90639 0.91730 0.87986 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -6.96 9.89 -148.98 -1.47 -8.43 16 3 C 0.05 0.74 6.28 71.98 0.45 1.19 16 4 C 0.12 2.08 6.32 86.38 0.55 2.62 16 5 N -0.61 -13.35 2.88 -818.00 -2.36 -15.71 16 6 C 0.13 2.66 6.59 86.83 0.57 3.23 16 7 C -0.11 -2.37 3.03 -10.48 -0.03 -2.40 16 8 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 9 C 0.54 14.43 7.13 87.66 0.63 15.06 16 10 O -0.57 -17.87 15.83 -3.04 -0.05 -17.92 16 11 N -0.61 -16.25 3.33 -811.76 -2.70 -18.95 16 12 C 0.12 2.94 6.37 86.85 0.55 3.50 16 13 C -0.11 -2.99 3.27 -9.40 -0.03 -3.02 16 14 H 0.07 2.17 8.01 -2.39 -0.02 2.15 16 15 C -0.13 -3.17 9.30 71.98 0.67 -2.50 16 16 C 0.17 5.68 3.08 46.19 0.14 5.82 16 17 H 0.07 2.40 7.96 -2.39 -0.02 2.38 16 18 N -0.72 -32.30 5.15 -317.31 -1.64 -33.93 16 19 C -0.24 -11.90 9.96 84.03 0.84 -11.07 16 20 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 22 N -0.97 -56.72 13.06 21.65 0.28 -56.43 16 23 Si 0.96 44.11 29.55 68.60 2.03 46.13 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C 0.08 2.30 5.86 86.73 0.51 2.80 16 28 C -0.14 -3.59 4.96 30.59 0.15 -3.43 16 29 C 0.52 14.61 8.02 87.90 0.71 15.32 16 30 O -0.57 -20.65 17.59 -3.04 -0.05 -20.71 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.69 7.92 -2.39 -0.02 1.67 16 38 H 0.11 1.92 7.44 -2.39 -0.02 1.91 16 39 H 0.08 1.83 7.06 -2.39 -0.02 1.81 16 40 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 41 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 42 H 0.07 1.48 8.11 -2.38 -0.02 1.46 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.37 18.59 7.76 -92.71 -0.72 17.87 16 46 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 2.12 6.09 -2.39 -0.01 2.11 16 49 H 0.10 2.75 7.89 -2.39 -0.02 2.73 16 50 H 0.11 2.96 7.16 -2.39 -0.02 2.94 16 Total: -1.00 -68.56 404.30 1.67 -66.89 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.21 Total: 33.67 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 7.41 Total: 25.40 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.41 Total: -125.03 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -1.57 Total: -47.06 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.56 1.67 -66.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.090 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds