Wall clock time and date at job start Tue Mar 31 2020 23:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.88249 * 2 1 4 4 C 1.54906 * 111.00429 * 236.11572 * 2 1 3 5 5 N 1.47426 * 104.83017 * 204.91342 * 4 2 1 6 6 C 1.34777 * 125.64505 * 204.08865 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72939 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.87119 * 54.30444 * 10 9 8 12 12 C 1.54109 * 109.87617 * 175.30598 * 10 9 8 13 13 C 1.54803 * 104.18727 * 121.45486 * 12 10 9 14 14 C 1.54994 * 102.09570 * 20.88250 * 13 12 10 15 15 H 1.09004 * 110.62038 * 81.63091 * 14 13 12 16 16 C 1.50694 * 110.62040 * 204.47717 * 14 13 12 17 17 N 1.34778 * 120.00036 * 294.99356 * 16 14 13 18 18 O 1.21277 * 120.00314 * 114.99978 * 16 14 13 19 19 O 1.43741 * 109.88324 * 293.29104 * 10 9 8 20 20 C 1.47021 * 108.70410 * 24.36109 * 5 4 2 21 21 C 1.54337 * 107.26261 * 358.58246 * 20 5 4 22 22 H 1.08996 * 110.51583 * 96.45968 * 21 20 5 23 23 N 1.46506 * 110.84648 * 219.67299 * 21 20 5 24 24 C 1.36935 * 120.00448 * 268.69417 * 23 21 20 25 25 H 1.08004 * 119.99343 * 359.97438 * 24 23 21 26 26 C 1.38806 * 120.00562 * 179.97438 * 24 23 21 27 27 N 1.31615 * 120.00597 * 179.97438 * 26 24 23 28 28 Si 1.86801 * 119.99670 * 0.02562 * 26 24 23 29 29 H 1.48508 * 109.46987 * 89.99857 * 28 26 24 30 30 H 1.48500 * 109.47111 * 209.99584 * 28 26 24 31 31 H 1.48499 * 109.47165 * 330.00007 * 28 26 24 32 32 H 1.08997 * 109.46962 * 182.43279 * 1 2 3 33 33 H 1.09002 * 109.47128 * 302.43073 * 1 2 3 34 34 H 1.08993 * 109.46785 * 62.42897 * 1 2 3 35 35 H 1.09003 * 110.36490 * 86.08070 * 4 2 1 36 36 H 1.09001 * 110.36844 * 323.75475 * 4 2 1 37 37 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 38 38 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 39 39 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 40 40 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 41 41 H 1.09003 * 110.48347 * 240.13664 * 12 10 9 42 42 H 1.09004 * 110.48679 * 2.77523 * 12 10 9 43 43 H 1.09008 * 110.90486 * 139.07529 * 13 12 10 44 44 H 1.08995 * 110.91071 * 262.64617 * 13 12 10 45 45 H 0.97005 * 119.99988 * 0.02562 * 17 16 14 46 46 H 0.96993 * 120.00162 * 179.97438 * 17 16 14 47 47 H 1.08996 * 109.88140 * 118.12609 * 20 5 4 48 48 H 1.09001 * 109.87951 * 239.29336 * 20 5 4 49 49 H 0.97004 * 119.99361 * 88.69501 * 23 21 20 50 50 H 0.96991 * 120.00585 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4272 -1.2427 -0.7737 6 6 4.4477 -1.5610 -1.5945 7 8 4.3009 -1.4990 -2.7968 8 6 5.7732 -1.9876 -1.0183 9 6 6.7527 -2.2829 -2.1560 10 6 8.0986 -2.7153 -1.5709 11 1 7.9537 -3.5511 -0.8864 12 6 9.0553 -3.1279 -2.7065 13 6 10.2705 -2.1834 -2.5407 14 6 10.1344 -1.7352 -1.0633 15 1 10.5470 -2.4898 -0.3936 16 6 10.8134 -0.4074 -0.8468 17 7 12.1493 -0.3023 -0.9908 18 8 10.1578 0.5666 -0.5428 19 8 8.7059 -1.6136 -0.8755 20 6 3.4658 -1.2796 0.6956 21 6 2.0861 -0.8083 1.2020 22 1 1.4468 -1.6636 1.4205 23 7 2.2286 0.0488 2.3816 24 6 2.2000 -0.5013 3.6352 25 1 2.0719 -1.5671 3.7543 26 6 2.3355 0.3106 4.7528 27 7 2.3075 -0.2181 5.9578 28 14 2.5563 2.1541 4.5467 29 1 1.2259 2.8138 4.5360 30 1 3.3632 2.6851 5.6746 31 1 3.2553 2.4287 3.2656 32 1 -0.3633 -1.0267 0.0436 33 1 -0.3633 0.5511 0.8674 34 1 -0.3632 0.4756 -0.9109 35 1 2.1560 -0.1713 -2.0837 36 1 1.4519 -1.6699 -1.4029 37 1 6.1722 -1.1881 -0.3938 38 1 5.6355 -2.8851 -0.4153 39 1 6.3537 -3.0823 -2.7805 40 1 6.8904 -1.3854 -2.7590 41 1 9.3611 -4.1675 -2.5888 42 1 8.5833 -2.9757 -3.6772 43 1 11.2054 -2.7210 -2.6995 44 1 10.1951 -1.3304 -3.2151 45 1 12.6737 -1.0813 -1.2341 46 1 12.5864 0.5523 -0.8518 47 1 3.6601 -2.2967 1.0359 48 1 4.2424 -0.6087 1.0629 49 1 2.3433 1.0061 2.2744 50 1 2.4018 0.3493 6.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082651135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:44 Heat of formation + Delta-G solvation = -112.993268 kcal Electronic energy + Delta-G solvation = -29923.493140 eV Core-core repulsion = 25757.516693 eV Total energy + Delta-G solvation = -4165.976447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59939 -39.83235 -38.70893 -37.63237 -34.19639 -34.15197 -33.62472 -32.52064 -32.28423 -31.03025 -29.30191 -27.86810 -26.59547 -24.81423 -23.72318 -22.65102 -21.33103 -21.08840 -20.88320 -20.15187 -18.83732 -18.04402 -17.56214 -17.33364 -16.88304 -16.55576 -16.21135 -15.82792 -15.11020 -15.01365 -14.81181 -14.75298 -14.23921 -13.82957 -13.64729 -13.40657 -13.36269 -13.16986 -12.99722 -12.57668 -12.41346 -12.35739 -12.27525 -12.08736 -11.88428 -11.65600 -11.42176 -11.34271 -11.17633 -11.06982 -10.89661 -10.75048 -10.60186 -10.34357 -10.27165 -10.07377 -10.00466 -9.87773 -9.66033 -9.57896 -9.00086 -8.32519 -7.37797 -5.82692 -3.20321 2.27131 2.77410 2.88210 3.24769 3.36642 3.40293 3.45255 3.68268 4.05509 4.28961 4.45206 4.48790 4.55218 4.67935 4.72946 4.85375 4.93526 5.04502 5.09755 5.10201 5.19053 5.24835 5.34084 5.42454 5.47954 5.49353 5.55449 5.66678 5.71163 5.74075 5.75213 5.82616 5.90025 6.00069 6.12785 6.15297 6.17970 6.33835 6.35668 6.41712 6.50402 6.55174 6.57263 6.78632 6.93047 7.81030 7.91544 7.91887 8.36080 8.40292 9.12700 9.85258 10.03541 11.34990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.002854 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.480235 B = 9810.143738 C =11787.762382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 H 0.080 0.920 4 C 0.114 3.886 5 N -0.615 5.615 6 C 0.528 3.472 7 O -0.559 6.559 8 C -0.136 4.136 9 C -0.098 4.098 10 C 0.072 3.928 11 H 0.076 0.924 12 C -0.150 4.150 13 C -0.143 4.143 14 C 0.056 3.944 15 H 0.098 0.902 16 C 0.520 3.480 17 N -0.854 5.854 18 O -0.515 6.515 19 O -0.338 6.338 20 C 0.072 3.928 21 C 0.183 3.817 22 H 0.077 0.923 23 N -0.735 5.735 24 C -0.252 4.252 25 H 0.092 0.908 26 C 0.010 3.990 27 N -0.930 5.930 28 Si 0.882 3.118 29 H -0.283 1.283 30 H -0.290 1.290 31 H -0.276 1.276 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.400 0.600 46 H 0.405 0.595 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.364 0.636 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.897 -7.365 -18.956 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 H 0.099 0.901 4 C -0.009 4.009 5 N -0.348 5.348 6 C 0.317 3.683 7 O -0.438 6.438 8 C -0.175 4.175 9 C -0.136 4.136 10 C 0.014 3.986 11 H 0.094 0.906 12 C -0.187 4.187 13 C -0.181 4.181 14 C -0.005 4.005 15 H 0.115 0.885 16 C 0.303 3.697 17 N -0.421 5.421 18 O -0.388 6.388 19 O -0.257 6.257 20 C -0.054 4.054 21 C 0.071 3.929 22 H 0.095 0.905 23 N -0.377 5.377 24 C -0.381 4.381 25 H 0.110 0.890 26 C -0.186 4.186 27 N -0.576 5.576 28 Si 0.712 3.288 29 H -0.210 1.210 30 H -0.216 1.216 31 H -0.202 1.202 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.229 0.771 46 H 0.237 0.763 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.198 0.802 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.115 -6.809 -19.060 25.872 hybrid contribution 0.908 1.100 0.057 1.427 sum 17.023 -5.710 -19.003 26.144 Atomic orbital electron populations 1.21609 0.93697 1.02110 1.01688 1.22694 0.96504 0.99697 0.94997 0.90129 1.22220 0.83058 0.98073 0.97555 1.48566 1.12114 1.66036 1.08101 1.20377 0.85041 0.76795 0.86067 1.90646 1.83569 1.54833 1.14799 1.21609 0.92321 1.03886 0.99708 1.21524 0.91692 1.03249 0.97151 1.22933 0.93492 0.89332 0.92825 0.90623 1.23006 0.95385 0.99908 1.00428 1.23097 0.99603 1.00425 0.94990 1.22987 0.85185 0.94757 0.97592 0.88465 1.20264 0.82502 0.90274 0.76621 1.43739 1.07827 1.15807 1.74701 1.90827 1.64207 1.38957 1.44815 1.89137 1.15125 1.47980 1.73409 1.23270 1.02873 1.01647 0.77580 1.21217 0.91960 0.93734 0.85995 0.90508 1.42716 1.87956 1.05107 1.01873 1.19063 1.43135 0.94653 0.81262 0.88992 1.24660 1.01429 0.97444 0.95071 1.69689 1.56399 1.34568 0.96990 0.86597 0.77936 0.87089 0.77201 1.20968 1.21633 1.20189 0.92490 0.91553 0.93117 0.91010 0.91597 0.88021 0.89025 0.89895 0.90389 0.90047 0.89559 0.89426 0.89895 0.77149 0.76343 0.91756 0.90826 0.80234 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.29 37.16 0.35 -1.47 16 2 C -0.12 -1.83 3.27 -88.47 -0.29 -2.12 16 3 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 4 C 0.11 1.70 6.37 -2.53 -0.02 1.69 16 5 N -0.61 -9.95 3.33 -170.51 -0.57 -10.51 16 6 C 0.53 8.62 7.85 -10.98 -0.09 8.53 16 7 O -0.56 -10.45 16.24 5.55 0.09 -10.36 16 8 C -0.14 -1.82 4.80 -27.88 -0.13 -1.96 16 9 C -0.10 -1.14 3.99 -26.73 -0.11 -1.24 16 10 C 0.07 0.69 3.40 -26.15 -0.09 0.60 16 11 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.15 -0.96 6.64 -25.20 -0.17 -1.13 16 13 C -0.14 -0.84 6.57 -24.73 -0.16 -1.00 16 14 C 0.06 0.49 3.76 -26.83 -0.10 0.38 16 15 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 16 C 0.52 5.43 7.48 -10.99 -0.08 5.34 16 17 N -0.85 -4.51 8.86 31.22 0.28 -4.24 16 18 O -0.51 -8.47 17.40 -13.47 -0.23 -8.71 16 19 O -0.34 -4.26 10.12 -54.26 -0.55 -4.81 16 20 C 0.07 1.23 6.25 -3.06 -0.02 1.21 16 21 C 0.18 3.33 3.07 -66.09 -0.20 3.13 16 22 H 0.08 1.42 7.96 -51.93 -0.41 1.00 16 23 N -0.74 -16.56 4.96 -51.64 -0.26 -16.81 16 24 C -0.25 -6.78 10.44 -15.06 -0.16 -6.94 16 25 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 26 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 27 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 28 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 31 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 32 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 36 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 37 H 0.10 1.50 7.89 -51.92 -0.41 1.09 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 43 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 44 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 45 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 46 H 0.41 1.89 8.93 -40.82 -0.36 1.53 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 49 H 0.36 8.22 5.62 -40.82 -0.23 8.00 16 50 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -37.18 404.95 -8.94 -46.12 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.50 Total: 8.65 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.36 Total: 5.22 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.23 Total: -59.36 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.69 Total: -23.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.18 -8.94 -46.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082651135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.874 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds