Wall clock time and date at job start Tue Mar 31 2020 23:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.88249 * 2 1 4 4 C 1.54906 * 111.00429 * 236.11572 * 2 1 3 5 5 N 1.47426 * 104.83017 * 204.91342 * 4 2 1 6 6 C 1.34777 * 125.64505 * 204.08865 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72939 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.87119 * 54.30444 * 10 9 8 12 12 C 1.54109 * 109.87617 * 175.30598 * 10 9 8 13 13 C 1.54803 * 104.18727 * 121.45486 * 12 10 9 14 14 C 1.54994 * 102.09570 * 20.88250 * 13 12 10 15 15 H 1.09004 * 110.62038 * 81.63091 * 14 13 12 16 16 C 1.50694 * 110.62040 * 204.47717 * 14 13 12 17 17 N 1.34778 * 120.00036 * 294.99356 * 16 14 13 18 18 O 1.21277 * 120.00314 * 114.99978 * 16 14 13 19 19 O 1.43741 * 109.88324 * 293.29104 * 10 9 8 20 20 C 1.47021 * 108.70410 * 24.36109 * 5 4 2 21 21 C 1.54337 * 107.26261 * 358.58246 * 20 5 4 22 22 H 1.08996 * 110.51583 * 96.45968 * 21 20 5 23 23 N 1.46506 * 110.84648 * 219.67299 * 21 20 5 24 24 C 1.36935 * 120.00448 * 268.69417 * 23 21 20 25 25 H 1.08004 * 119.99343 * 359.97438 * 24 23 21 26 26 C 1.38806 * 120.00562 * 179.97438 * 24 23 21 27 27 N 1.31615 * 120.00597 * 179.97438 * 26 24 23 28 28 Si 1.86801 * 119.99670 * 0.02562 * 26 24 23 29 29 H 1.48508 * 109.46987 * 89.99857 * 28 26 24 30 30 H 1.48500 * 109.47111 * 209.99584 * 28 26 24 31 31 H 1.48499 * 109.47165 * 330.00007 * 28 26 24 32 32 H 1.08997 * 109.46962 * 182.43279 * 1 2 3 33 33 H 1.09002 * 109.47128 * 302.43073 * 1 2 3 34 34 H 1.08993 * 109.46785 * 62.42897 * 1 2 3 35 35 H 1.09003 * 110.36490 * 86.08070 * 4 2 1 36 36 H 1.09001 * 110.36844 * 323.75475 * 4 2 1 37 37 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 38 38 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 39 39 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 40 40 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 41 41 H 1.09003 * 110.48347 * 240.13664 * 12 10 9 42 42 H 1.09004 * 110.48679 * 2.77523 * 12 10 9 43 43 H 1.09008 * 110.90486 * 139.07529 * 13 12 10 44 44 H 1.08995 * 110.91071 * 262.64617 * 13 12 10 45 45 H 0.97005 * 119.99988 * 0.02562 * 17 16 14 46 46 H 0.96993 * 120.00162 * 179.97438 * 17 16 14 47 47 H 1.08996 * 109.88140 * 118.12609 * 20 5 4 48 48 H 1.09001 * 109.87951 * 239.29336 * 20 5 4 49 49 H 0.97004 * 119.99361 * 88.69501 * 23 21 20 50 50 H 0.96991 * 120.00585 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4272 -1.2427 -0.7737 6 6 4.4477 -1.5610 -1.5945 7 8 4.3009 -1.4990 -2.7968 8 6 5.7732 -1.9876 -1.0183 9 6 6.7527 -2.2829 -2.1560 10 6 8.0986 -2.7153 -1.5709 11 1 7.9537 -3.5511 -0.8864 12 6 9.0553 -3.1279 -2.7065 13 6 10.2705 -2.1834 -2.5407 14 6 10.1344 -1.7352 -1.0633 15 1 10.5470 -2.4898 -0.3936 16 6 10.8134 -0.4074 -0.8468 17 7 12.1493 -0.3023 -0.9908 18 8 10.1578 0.5666 -0.5428 19 8 8.7059 -1.6136 -0.8755 20 6 3.4658 -1.2796 0.6956 21 6 2.0861 -0.8083 1.2020 22 1 1.4468 -1.6636 1.4205 23 7 2.2286 0.0488 2.3816 24 6 2.2000 -0.5013 3.6352 25 1 2.0719 -1.5671 3.7543 26 6 2.3355 0.3106 4.7528 27 7 2.3075 -0.2181 5.9578 28 14 2.5563 2.1541 4.5467 29 1 1.2259 2.8138 4.5360 30 1 3.3632 2.6851 5.6746 31 1 3.2553 2.4287 3.2656 32 1 -0.3633 -1.0267 0.0436 33 1 -0.3633 0.5511 0.8674 34 1 -0.3632 0.4756 -0.9109 35 1 2.1560 -0.1713 -2.0837 36 1 1.4519 -1.6699 -1.4029 37 1 6.1722 -1.1881 -0.3938 38 1 5.6355 -2.8851 -0.4153 39 1 6.3537 -3.0823 -2.7805 40 1 6.8904 -1.3854 -2.7590 41 1 9.3611 -4.1675 -2.5888 42 1 8.5833 -2.9757 -3.6772 43 1 11.2054 -2.7210 -2.6995 44 1 10.1951 -1.3304 -3.2151 45 1 12.6737 -1.0813 -1.2341 46 1 12.5864 0.5523 -0.8518 47 1 3.6601 -2.2967 1.0359 48 1 4.2424 -0.6087 1.0629 49 1 2.3433 1.0061 2.2744 50 1 2.4018 0.3493 6.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082651135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:43 Heat of formation + Delta-G solvation = -141.597710 kcal Electronic energy + Delta-G solvation = -29924.733521 eV Core-core repulsion = 25757.516693 eV Total energy + Delta-G solvation = -4167.216829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40630 -41.07801 -39.56518 -38.99280 -35.97078 -34.95681 -34.58618 -33.91879 -32.99306 -32.82859 -30.13420 -29.46986 -27.65531 -25.87135 -25.39327 -23.48625 -22.69226 -21.90259 -21.61613 -21.56584 -20.12198 -19.53752 -18.68526 -18.16220 -17.89991 -17.53316 -17.37170 -16.81736 -16.51608 -16.23999 -15.95615 -15.65667 -15.54382 -15.05104 -14.86486 -14.72300 -14.44656 -14.30019 -14.21364 -14.15998 -13.70089 -13.51595 -13.19290 -13.07343 -12.95540 -12.91230 -12.85257 -12.65945 -12.27591 -12.17876 -12.09068 -11.97786 -11.90459 -11.80961 -11.60489 -11.45083 -11.08305 -11.04141 -10.86692 -10.75389 -10.62405 -9.68486 -9.37076 -8.02383 -5.36782 1.38951 1.40527 1.46795 1.51217 1.56558 1.97640 2.16670 2.47696 3.05225 3.25065 3.30407 3.52272 3.60519 3.69446 3.81193 3.83377 3.88685 3.97013 4.08126 4.10654 4.17157 4.27833 4.32957 4.35208 4.40752 4.54812 4.59809 4.65626 4.69035 4.73922 4.86053 4.88097 4.89834 5.02183 5.02732 5.08917 5.09575 5.11584 5.23932 5.28009 5.29418 5.46697 5.77548 5.77600 5.92865 6.21540 6.42859 6.48013 7.05180 7.09429 7.29737 7.80581 7.98693 9.18497 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.002854 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.480235 B = 9810.143738 C =11787.762382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 H 0.075 0.925 4 C 0.115 3.885 5 N -0.616 5.616 6 C 0.524 3.476 7 O -0.583 6.583 8 C -0.130 4.130 9 C -0.093 4.093 10 C 0.068 3.932 11 H 0.090 0.910 12 C -0.144 4.144 13 C -0.134 4.134 14 C 0.049 3.951 15 H 0.128 0.872 16 C 0.514 3.486 17 N -0.827 5.827 18 O -0.590 6.590 19 O -0.383 6.383 20 C 0.084 3.916 21 C 0.175 3.825 22 H 0.077 0.923 23 N -0.738 5.738 24 C -0.228 4.228 25 H 0.067 0.933 26 C -0.056 4.056 27 N -0.979 5.979 28 Si 0.944 3.056 29 H -0.276 1.276 30 H -0.299 1.299 31 H -0.259 1.259 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.067 0.933 45 H 0.422 0.578 46 H 0.410 0.590 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.366 0.634 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.219 -8.476 -21.163 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.008 4.008 5 N -0.349 5.349 6 C 0.315 3.685 7 O -0.464 6.464 8 C -0.170 4.170 9 C -0.131 4.131 10 C 0.011 3.989 11 H 0.108 0.892 12 C -0.181 4.181 13 C -0.171 4.171 14 C -0.012 4.012 15 H 0.145 0.855 16 C 0.299 3.701 17 N -0.393 5.393 18 O -0.469 6.469 19 O -0.302 6.302 20 C -0.042 4.042 21 C 0.065 3.935 22 H 0.095 0.905 23 N -0.380 5.380 24 C -0.358 4.358 25 H 0.085 0.915 26 C -0.248 4.248 27 N -0.629 5.629 28 Si 0.773 3.227 29 H -0.202 1.202 30 H -0.226 1.226 31 H -0.184 1.184 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.148 0.852 44 H 0.086 0.914 45 H 0.254 0.746 46 H 0.242 0.758 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.493 -7.963 -21.351 28.728 hybrid contribution 0.534 1.352 0.666 1.599 sum 18.027 -6.611 -20.685 28.223 Atomic orbital electron populations 1.21590 0.91992 1.02796 1.02304 1.22615 0.97836 0.98918 0.93420 0.90642 1.22306 0.82623 0.98657 0.97177 1.48618 1.12785 1.65952 1.07563 1.20859 0.85718 0.76194 0.85763 1.90629 1.84050 1.55936 1.15784 1.21633 0.91142 1.03901 1.00333 1.21498 0.92813 1.02462 0.96306 1.23053 0.92852 0.88860 0.94141 0.89218 1.23024 0.94629 1.01578 0.98919 1.23128 1.01436 1.00133 0.92451 1.23312 0.83453 0.94235 1.00150 0.85472 1.20791 0.83600 0.90221 0.75528 1.43537 1.06370 1.17046 1.72337 1.90791 1.66077 1.41335 1.48724 1.89101 1.17541 1.49411 1.74196 1.22952 1.01370 1.01656 0.78216 1.21417 0.92718 0.93764 0.85624 0.90519 1.42682 1.88069 1.05612 1.01616 1.19036 1.40274 0.93548 0.82979 0.91512 1.25365 1.02681 1.01876 0.94835 1.69847 1.59142 1.36093 0.97852 0.85571 0.78016 0.81799 0.77346 1.20230 1.22645 1.18376 0.91626 0.92937 0.90680 0.90819 0.89945 0.89758 0.87165 0.88884 0.92879 0.87034 0.89755 0.85158 0.91445 0.74594 0.75806 0.90909 0.92469 0.80072 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.29 71.98 0.67 -2.55 16 2 C -0.11 -3.15 3.27 -9.40 -0.03 -3.18 16 3 H 0.08 2.31 8.01 -2.38 -0.02 2.29 16 4 C 0.11 3.23 6.37 86.85 0.55 3.78 16 5 N -0.62 -19.37 3.33 -811.77 -2.70 -22.07 16 6 C 0.52 16.87 7.85 87.66 0.69 17.56 16 7 O -0.58 -21.52 16.24 -3.04 -0.05 -21.57 16 8 C -0.13 -3.49 4.80 29.85 0.14 -3.35 16 9 C -0.09 -2.12 3.99 30.59 0.12 -1.99 16 10 C 0.07 1.21 3.40 30.97 0.11 1.31 16 11 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 12 C -0.14 -1.44 6.64 31.59 0.21 -1.23 16 13 C -0.13 -1.19 6.57 31.89 0.21 -0.98 16 14 C 0.05 0.77 3.76 30.53 0.11 0.88 16 15 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 16 C 0.51 10.54 7.48 87.65 0.66 11.20 16 17 N -0.83 -7.35 8.86 -173.54 -1.54 -8.89 16 18 O -0.59 -20.37 17.40 15.17 0.26 -20.10 16 19 O -0.38 -9.63 10.12 -130.78 -1.32 -10.96 16 20 C 0.08 2.82 6.25 86.73 0.54 3.36 16 21 C 0.17 6.22 3.07 46.18 0.14 6.36 16 22 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 23 N -0.74 -32.88 4.96 -317.31 -1.57 -34.45 16 24 C -0.23 -12.39 10.44 84.03 0.88 -11.51 16 25 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 26 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 27 N -0.98 -61.72 13.97 21.65 0.30 -61.42 16 28 Si 0.94 45.53 27.74 68.60 1.90 47.44 16 29 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 30 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 31 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 32 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 36 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 37 H 0.08 2.58 7.89 -2.38 -0.02 2.57 16 38 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.09 1.89 8.10 -2.39 -0.02 1.87 16 40 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 41 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.90 7.70 -2.38 -0.02 0.88 16 43 H 0.13 0.05 8.14 -2.38 -0.02 0.03 16 44 H 0.07 0.83 8.05 -2.39 -0.02 0.81 16 45 H 0.42 0.07 8.83 -92.70 -0.82 -0.75 16 46 H 0.41 3.34 8.93 -92.71 -0.83 2.51 16 47 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 49 H 0.37 16.11 5.62 -92.71 -0.52 15.59 16 50 H 0.26 15.58 8.31 -92.72 -0.77 14.81 16 Total: -1.00 -84.80 404.95 -0.51 -85.31 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -1.26 Total: 29.80 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.47 Total: 16.91 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.51 Total: -126.83 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.11 Total: -52.63 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.44 kcal Total: -84.80 -0.51 -85.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082651135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.286 kcal (2) G-P(sol) polarization free energy of solvation -84.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds