Wall clock time and date at job start Tue Mar 31 2020 23:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.64248 * 2 1 4 4 C 1.54327 * 110.85021 * 236.82841 * 2 1 3 5 5 N 1.47026 * 107.26532 * 219.67602 * 4 2 1 6 6 C 1.34775 * 125.64760 * 178.85599 * 5 4 2 7 7 O 1.21284 * 119.99927 * 184.77585 * 6 5 4 8 8 C 1.50700 * 120.00239 * 4.76361 * 6 5 4 9 9 H 1.08996 * 110.67524 * 304.69159 * 8 6 5 10 10 C 1.54998 * 110.61447 * 67.65214 * 8 6 5 11 11 C 1.54810 * 102.09342 * 155.52305 * 10 8 6 12 12 C 1.54099 * 104.18535 * 339.12327 * 11 10 8 13 13 H 1.08999 * 109.88176 * 117.39644 * 12 11 10 14 14 C 1.50703 * 109.87808 * 238.54144 * 12 11 10 15 15 O 1.21283 * 120.00041 * 114.99711 * 14 12 11 16 16 N 1.34784 * 120.00207 * 295.00196 * 14 12 11 17 17 C 1.46498 * 120.00033 * 179.97438 * 16 14 12 18 18 C 1.46496 * 119.99542 * 359.97438 * 16 14 12 19 19 O 1.43742 * 107.29677 * 357.96305 * 12 11 10 20 20 C 1.47422 * 108.70420 * 358.58622 * 5 4 2 21 21 C 1.54916 * 104.83101 * 24.35657 * 20 5 4 22 22 H 1.08999 * 111.00037 * 81.06651 * 21 20 5 23 23 N 1.46502 * 111.00171 * 204.91504 * 21 20 5 24 24 C 1.36933 * 120.00324 * 273.54470 * 23 21 20 25 25 H 1.07999 * 119.99690 * 0.02562 * 24 23 21 26 26 C 1.38809 * 119.99900 * 180.02562 * 24 23 21 27 27 N 1.31617 * 120.00421 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 119.99533 * 180.02562 * 26 24 23 29 29 H 1.48503 * 109.47341 * 60.00278 * 28 26 24 30 30 H 1.48501 * 109.46737 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47118 * 299.99544 * 28 26 24 32 32 H 1.09005 * 109.47104 * 296.86523 * 1 2 3 33 33 H 1.08999 * 109.46815 * 56.86066 * 1 2 3 34 34 H 1.08994 * 109.47093 * 176.86226 * 1 2 3 35 35 H 1.09004 * 109.99253 * 100.20255 * 4 2 1 36 36 H 1.08997 * 109.78139 * 339.03319 * 4 2 1 37 37 H 1.09004 * 110.91021 * 37.32701 * 10 8 6 38 38 H 1.08996 * 110.91144 * 273.72491 * 10 8 6 39 39 H 1.09001 * 110.48608 * 97.79553 * 11 10 8 40 40 H 1.08994 * 110.49205 * 220.44420 * 11 10 8 41 41 H 1.08994 * 109.46964 * 90.00235 * 17 16 14 42 42 H 1.08999 * 109.46602 * 209.99882 * 17 16 14 43 43 H 1.09005 * 109.47255 * 329.99893 * 17 16 14 44 44 H 1.08999 * 109.47423 * 89.99820 * 18 16 14 45 45 H 1.09005 * 109.46667 * 209.99804 * 18 16 14 46 46 H 1.09007 * 109.47624 * 329.99527 * 18 16 14 47 47 H 1.08998 * 110.36716 * 143.19658 * 20 5 4 48 48 H 1.08998 * 110.36719 * 265.41105 * 20 5 4 49 49 H 0.97003 * 119.99486 * 93.55118 * 23 21 20 50 50 H 0.97001 * 119.99996 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0793 -0.7891 -1.2072 5 7 3.2445 -1.5521 -0.7361 6 6 3.9924 -2.3862 -1.4854 7 8 4.8807 -3.0319 -0.9707 8 6 3.7246 -2.5168 -2.9627 9 1 2.6841 -2.7867 -3.1428 10 6 4.0830 -1.2017 -3.7006 11 6 4.3616 -1.7024 -5.1387 12 6 4.6664 -3.2028 -4.9639 13 1 3.9202 -3.7966 -5.4918 14 6 6.0417 -3.5118 -5.4969 15 8 6.9142 -3.8872 -4.7426 16 7 6.3023 -3.3710 -6.8118 17 6 7.6394 -3.6709 -7.3298 18 6 5.2483 -2.9180 -7.7229 19 8 4.6122 -3.4887 -3.5562 20 6 3.4633 -1.2486 0.6898 21 6 2.0789 -0.7933 1.2153 22 1 1.4451 -1.6511 1.4405 23 7 2.2214 0.0738 2.3875 24 6 2.3173 -0.4757 3.6381 25 1 2.2883 -1.5484 3.7602 26 6 2.4518 0.3459 4.7487 27 7 2.4867 1.6532 4.6000 28 14 2.5834 -0.4038 6.4547 29 1 3.7748 -1.2882 6.5162 30 1 2.7186 0.6788 7.4620 31 1 1.3619 -1.1980 6.7418 32 1 -0.3633 0.4644 0.9168 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0261 -0.0562 35 1 2.3815 -0.1005 -1.9963 36 1 1.3156 -1.4714 -1.5803 37 1 4.9729 -0.7435 -3.2690 38 1 3.2436 -0.5066 -3.6865 39 1 3.4829 -1.5624 -5.7684 40 1 5.2222 -1.1851 -5.5628 41 1 7.6902 -4.7207 -7.6184 42 1 7.8410 -3.0450 -8.1990 43 1 8.3818 -3.4701 -6.5573 44 1 5.2677 -1.8302 -7.7887 45 1 5.4149 -3.3450 -8.7119 46 1 4.2781 -3.2420 -7.3460 47 1 3.7960 -2.1405 1.2208 48 1 4.1945 -0.4479 0.7994 49 1 2.2478 1.0372 2.2777 50 1 2.5811 2.2273 5.3761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082739467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:07 Heat of formation + Delta-G solvation = -84.078933 kcal Electronic energy + Delta-G solvation = -30386.203896 eV Core-core repulsion = 26221.481269 eV Total energy + Delta-G solvation = -4164.722627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00247 -39.85996 -38.57391 -37.24718 -35.92998 -34.20012 -32.71624 -32.26880 -31.07054 -30.57123 -28.45486 -27.61093 -26.55733 -26.17680 -24.47397 -23.44182 -22.36769 -21.41692 -19.98951 -19.94077 -19.21058 -17.89541 -17.23967 -17.03478 -16.76421 -16.39015 -16.14914 -15.87030 -15.26601 -14.92544 -14.61415 -14.23332 -14.03265 -13.94352 -13.63657 -13.46020 -13.19517 -13.13758 -13.05034 -12.98313 -12.85776 -12.63953 -12.50362 -12.29651 -12.10443 -11.95672 -11.82467 -11.57543 -11.38753 -11.11437 -11.01087 -10.75481 -10.66358 -10.54289 -10.27030 -9.94490 -9.79652 -9.73826 -9.45740 -9.12036 -8.99417 -8.34647 -7.07351 -5.83456 -3.13956 2.26019 2.35154 2.74255 2.93077 3.43489 3.47988 3.49298 3.70218 3.92186 4.12131 4.29888 4.46522 4.54743 4.56480 4.68448 4.74223 4.78163 4.79552 4.86395 4.96119 5.01493 5.09279 5.12966 5.18133 5.23938 5.27441 5.41794 5.44372 5.47458 5.59870 5.64021 5.65732 5.80118 5.83740 5.96886 5.98536 6.14807 6.24319 6.31923 6.38784 6.50305 6.55712 6.64442 6.88807 6.90393 7.66754 7.74573 7.84969 8.33711 8.37607 9.46383 9.98882 10.33901 11.38399 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.002231 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.705260 B =12547.380177 C =13294.757129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.086 0.914 4 C 0.104 3.896 5 N -0.612 5.612 6 C 0.529 3.471 7 O -0.517 6.517 8 C 0.062 3.938 9 H 0.098 0.902 10 C -0.142 4.142 11 C -0.143 4.143 12 C 0.059 3.941 13 H 0.098 0.902 14 C 0.510 3.490 15 O -0.506 6.506 16 N -0.625 5.625 17 C 0.086 3.914 18 C 0.075 3.925 19 O -0.317 6.317 20 C 0.083 3.917 21 C 0.177 3.823 22 H 0.065 0.935 23 N -0.710 5.710 24 C -0.247 4.247 25 H 0.072 0.928 26 C -0.008 4.008 27 N -0.931 5.931 28 Si 0.908 3.092 29 H -0.284 1.284 30 H -0.291 1.291 31 H -0.285 1.285 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.387 0.613 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 -4.194 -30.296 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.104 0.896 4 C -0.019 4.019 5 N -0.348 5.348 6 C 0.315 3.685 7 O -0.391 6.391 8 C 0.001 3.999 9 H 0.116 0.884 10 C -0.180 4.180 11 C -0.181 4.181 12 C -0.003 4.003 13 H 0.115 0.885 14 C 0.297 3.703 15 O -0.379 6.379 16 N -0.362 5.362 17 C -0.056 4.056 18 C -0.068 4.068 19 O -0.234 6.234 20 C -0.042 4.042 21 C 0.065 3.935 22 H 0.083 0.917 23 N -0.349 5.349 24 C -0.378 4.378 25 H 0.090 0.910 26 C -0.205 4.205 27 N -0.578 5.578 28 Si 0.739 3.261 29 H -0.211 1.211 30 H -0.217 1.217 31 H -0.211 1.211 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.221 0.779 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.348 -5.070 -29.326 29.763 hybrid contribution 0.018 0.136 0.593 0.608 sum -0.330 -4.934 -28.733 29.155 Atomic orbital electron populations 1.21679 0.93853 1.01556 1.02143 1.22460 0.96409 0.99893 0.94475 0.89616 1.22214 0.87598 0.94535 0.97591 1.48422 1.29915 1.43993 1.12490 1.19622 0.82101 0.79670 0.87142 1.90765 1.31442 1.43824 1.73112 1.23030 0.95309 0.89293 0.92275 0.88446 1.23138 1.03909 0.96988 0.93993 1.22979 1.03418 0.93387 0.98285 1.22668 0.94898 0.97205 0.85501 0.88473 1.20520 0.90138 0.77940 0.81720 1.90781 1.47099 1.43749 1.56281 1.47686 1.12684 1.68588 1.07245 1.21646 0.83519 1.00680 0.99789 1.21921 0.90727 1.00034 0.94141 1.89167 1.66404 1.50854 1.16930 1.23461 1.01788 1.01019 0.77946 1.21379 0.91930 0.93587 0.86607 0.91690 1.42266 1.86882 1.05067 1.00725 1.19200 1.43069 0.91940 0.83589 0.91008 1.24753 1.02309 0.95353 0.98045 1.69644 1.56609 1.01996 1.29558 0.86254 0.78040 0.77816 0.84000 1.21082 1.21666 1.21146 0.91241 0.93207 0.92850 0.91793 0.91556 0.89527 0.88498 0.88940 0.89664 0.92629 0.91094 0.90391 0.92141 0.90723 0.90851 0.90940 0.91378 0.77866 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.16 37.16 0.34 -1.33 16 2 C -0.11 -1.60 3.16 -88.78 -0.28 -1.88 16 3 H 0.09 1.25 7.99 -51.93 -0.42 0.84 16 4 C 0.10 1.23 5.89 -3.06 -0.02 1.21 16 5 N -0.61 -9.69 3.33 -170.51 -0.57 -10.26 16 6 C 0.53 9.09 7.23 -10.99 -0.08 9.01 16 7 O -0.52 -11.66 16.80 -13.51 -0.23 -11.89 16 8 C 0.06 0.77 3.10 -26.83 -0.08 0.69 16 9 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 10 C -0.14 -1.29 6.02 -24.72 -0.15 -1.44 16 11 C -0.14 -0.96 5.22 -25.20 -0.13 -1.09 16 12 C 0.06 0.59 2.98 -27.31 -0.08 0.51 16 13 H 0.10 0.67 7.21 -51.93 -0.37 0.29 16 14 C 0.51 6.16 6.87 -10.98 -0.08 6.09 16 15 O -0.51 -8.93 16.11 -14.02 -0.23 -9.15 16 16 N -0.62 -4.90 3.27 -189.51 -0.62 -5.52 16 17 C 0.09 0.58 10.44 59.85 0.62 1.21 16 18 C 0.07 0.25 9.20 59.84 0.55 0.80 16 19 O -0.32 -4.83 10.01 -64.30 -0.64 -5.47 16 20 C 0.08 1.58 6.62 -2.53 -0.02 1.57 16 21 C 0.18 3.34 3.14 -65.77 -0.21 3.13 16 22 H 0.07 1.26 8.04 -51.93 -0.42 0.85 16 23 N -0.71 -16.83 5.28 -51.35 -0.27 -17.10 16 24 C -0.25 -6.67 9.98 -15.06 -0.15 -6.82 16 25 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 26 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 27 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 28 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 36 H 0.07 0.65 7.77 -51.93 -0.40 0.25 16 37 H 0.09 0.97 8.05 -51.93 -0.42 0.56 16 38 H 0.10 0.61 6.62 -51.93 -0.34 0.27 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.56 7.30 -51.93 -0.38 0.18 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 43 H 0.08 0.69 7.42 -51.93 -0.39 0.31 16 44 H 0.06 0.14 7.83 -51.93 -0.41 -0.27 16 45 H 0.07 0.13 8.07 -51.93 -0.42 -0.28 16 46 H 0.07 0.17 6.19 -51.93 -0.32 -0.15 16 47 H 0.07 1.55 7.99 -51.93 -0.41 1.13 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.39 9.66 7.71 -40.82 -0.31 9.35 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -38.17 398.85 -8.96 -47.13 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.26 Total: 4.29 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 0.15 Total: 11.33 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.73 Total: -59.48 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.10 Total: -26.51 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.17 -8.96 -47.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082739467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.951 kcal (2) G-P(sol) polarization free energy of solvation -38.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds