Wall clock time and date at job start Tue Mar 31 2020 23:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.64248 * 2 1 4 4 C 1.54327 * 110.85021 * 236.82841 * 2 1 3 5 5 N 1.47026 * 107.26532 * 219.67602 * 4 2 1 6 6 C 1.34775 * 125.64760 * 178.85599 * 5 4 2 7 7 O 1.21284 * 119.99927 * 184.77585 * 6 5 4 8 8 C 1.50700 * 120.00239 * 4.76361 * 6 5 4 9 9 H 1.08996 * 110.67524 * 304.69159 * 8 6 5 10 10 C 1.54998 * 110.61447 * 67.65214 * 8 6 5 11 11 C 1.54810 * 102.09342 * 155.52305 * 10 8 6 12 12 C 1.54099 * 104.18535 * 339.12327 * 11 10 8 13 13 H 1.08999 * 109.88176 * 117.39644 * 12 11 10 14 14 C 1.50703 * 109.87808 * 238.54144 * 12 11 10 15 15 O 1.21283 * 120.00041 * 114.99711 * 14 12 11 16 16 N 1.34784 * 120.00207 * 295.00196 * 14 12 11 17 17 C 1.46498 * 120.00033 * 179.97438 * 16 14 12 18 18 C 1.46496 * 119.99542 * 359.97438 * 16 14 12 19 19 O 1.43742 * 107.29677 * 357.96305 * 12 11 10 20 20 C 1.47422 * 108.70420 * 358.58622 * 5 4 2 21 21 C 1.54916 * 104.83101 * 24.35657 * 20 5 4 22 22 H 1.08999 * 111.00037 * 81.06651 * 21 20 5 23 23 N 1.46502 * 111.00171 * 204.91504 * 21 20 5 24 24 C 1.36933 * 120.00324 * 273.54470 * 23 21 20 25 25 H 1.07999 * 119.99690 * 0.02562 * 24 23 21 26 26 C 1.38809 * 119.99900 * 180.02562 * 24 23 21 27 27 N 1.31617 * 120.00421 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 119.99533 * 180.02562 * 26 24 23 29 29 H 1.48503 * 109.47341 * 60.00278 * 28 26 24 30 30 H 1.48501 * 109.46737 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47118 * 299.99544 * 28 26 24 32 32 H 1.09005 * 109.47104 * 296.86523 * 1 2 3 33 33 H 1.08999 * 109.46815 * 56.86066 * 1 2 3 34 34 H 1.08994 * 109.47093 * 176.86226 * 1 2 3 35 35 H 1.09004 * 109.99253 * 100.20255 * 4 2 1 36 36 H 1.08997 * 109.78139 * 339.03319 * 4 2 1 37 37 H 1.09004 * 110.91021 * 37.32701 * 10 8 6 38 38 H 1.08996 * 110.91144 * 273.72491 * 10 8 6 39 39 H 1.09001 * 110.48608 * 97.79553 * 11 10 8 40 40 H 1.08994 * 110.49205 * 220.44420 * 11 10 8 41 41 H 1.08994 * 109.46964 * 90.00235 * 17 16 14 42 42 H 1.08999 * 109.46602 * 209.99882 * 17 16 14 43 43 H 1.09005 * 109.47255 * 329.99893 * 17 16 14 44 44 H 1.08999 * 109.47423 * 89.99820 * 18 16 14 45 45 H 1.09005 * 109.46667 * 209.99804 * 18 16 14 46 46 H 1.09007 * 109.47624 * 329.99527 * 18 16 14 47 47 H 1.08998 * 110.36716 * 143.19658 * 20 5 4 48 48 H 1.08998 * 110.36719 * 265.41105 * 20 5 4 49 49 H 0.97003 * 119.99486 * 93.55118 * 23 21 20 50 50 H 0.97001 * 119.99996 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0793 -0.7891 -1.2072 5 7 3.2445 -1.5521 -0.7361 6 6 3.9924 -2.3862 -1.4854 7 8 4.8807 -3.0319 -0.9707 8 6 3.7246 -2.5168 -2.9627 9 1 2.6841 -2.7867 -3.1428 10 6 4.0830 -1.2017 -3.7006 11 6 4.3616 -1.7024 -5.1387 12 6 4.6664 -3.2028 -4.9639 13 1 3.9202 -3.7966 -5.4918 14 6 6.0417 -3.5118 -5.4969 15 8 6.9142 -3.8872 -4.7426 16 7 6.3023 -3.3710 -6.8118 17 6 7.6394 -3.6709 -7.3298 18 6 5.2483 -2.9180 -7.7229 19 8 4.6122 -3.4887 -3.5562 20 6 3.4633 -1.2486 0.6898 21 6 2.0789 -0.7933 1.2153 22 1 1.4451 -1.6511 1.4405 23 7 2.2214 0.0738 2.3875 24 6 2.3173 -0.4757 3.6381 25 1 2.2883 -1.5484 3.7602 26 6 2.4518 0.3459 4.7487 27 7 2.4867 1.6532 4.6000 28 14 2.5834 -0.4038 6.4547 29 1 3.7748 -1.2882 6.5162 30 1 2.7186 0.6788 7.4620 31 1 1.3619 -1.1980 6.7418 32 1 -0.3633 0.4644 0.9168 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0261 -0.0562 35 1 2.3815 -0.1005 -1.9963 36 1 1.3156 -1.4714 -1.5803 37 1 4.9729 -0.7435 -3.2690 38 1 3.2436 -0.5066 -3.6865 39 1 3.4829 -1.5624 -5.7684 40 1 5.2222 -1.1851 -5.5628 41 1 7.6902 -4.7207 -7.6184 42 1 7.8410 -3.0450 -8.1990 43 1 8.3818 -3.4701 -6.5573 44 1 5.2677 -1.8302 -7.7887 45 1 5.4149 -3.3450 -8.7119 46 1 4.2781 -3.2420 -7.3460 47 1 3.7960 -2.1405 1.2208 48 1 4.1945 -0.4479 0.7994 49 1 2.2478 1.0372 2.2777 50 1 2.5811 2.2273 5.3761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082739467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:06 Heat of formation + Delta-G solvation = -112.884960 kcal Electronic energy + Delta-G solvation = -30387.453019 eV Core-core repulsion = 26221.481269 eV Total energy + Delta-G solvation = -4165.971750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89958 -40.99737 -39.59831 -38.59991 -36.67880 -35.99308 -34.02103 -33.20969 -32.48469 -31.76649 -29.45826 -28.53915 -27.45196 -27.10169 -26.00131 -24.70554 -23.11668 -22.67820 -21.37830 -20.75011 -20.34355 -19.16785 -18.71091 -17.93118 -17.62681 -17.56220 -17.26341 -16.80530 -16.42844 -16.06640 -15.78633 -15.64644 -15.37192 -14.84617 -14.73143 -14.59778 -14.45208 -14.31235 -14.18736 -13.86411 -13.54347 -13.41195 -13.39938 -13.18292 -12.97319 -12.91631 -12.87742 -12.85096 -12.72324 -12.57612 -12.26464 -12.12938 -11.99053 -11.98164 -11.71285 -11.44095 -11.35246 -11.00513 -10.83983 -10.52922 -9.73434 -9.71293 -9.07438 -7.98837 -5.27938 1.42862 1.45301 1.47911 1.48493 1.52905 1.55242 1.96545 2.53114 2.88814 3.19643 3.32184 3.40255 3.57007 3.68563 3.72631 3.85070 3.92702 3.98186 4.08086 4.22617 4.25566 4.32490 4.37741 4.39459 4.46663 4.49175 4.54759 4.63121 4.65760 4.80329 4.82022 4.88503 4.90362 4.91651 4.96927 4.99432 5.04641 5.08525 5.16825 5.23752 5.38565 5.43185 5.50263 5.56812 5.65913 6.23287 6.27005 6.49659 7.06736 7.08983 7.30852 8.02488 8.27028 9.23314 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.002231 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.705260 B =12547.380177 C =13294.757129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 H 0.082 0.918 4 C 0.104 3.896 5 N -0.607 5.607 6 C 0.517 3.483 7 O -0.590 6.590 8 C 0.067 3.933 9 H 0.144 0.856 10 C -0.140 4.140 11 C -0.128 4.128 12 C 0.053 3.947 13 H 0.138 0.862 14 C 0.496 3.504 15 O -0.586 6.586 16 N -0.616 5.616 17 C 0.081 3.919 18 C 0.063 3.937 19 O -0.371 6.371 20 C 0.090 3.910 21 C 0.172 3.828 22 H 0.059 0.941 23 N -0.719 5.719 24 C -0.247 4.247 25 H 0.069 0.931 26 C -0.066 4.066 27 N -0.962 5.962 28 Si 0.967 3.033 29 H -0.286 1.286 30 H -0.292 1.292 31 H -0.275 1.275 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.035 0.965 48 H 0.046 0.954 49 H 0.379 0.621 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -3.459 -34.786 35.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.017 4.017 5 N -0.341 5.341 6 C 0.306 3.694 7 O -0.470 6.470 8 C 0.007 3.993 9 H 0.161 0.839 10 C -0.177 4.177 11 C -0.166 4.166 12 C -0.008 4.008 13 H 0.155 0.845 14 C 0.284 3.716 15 O -0.465 6.465 16 N -0.350 5.350 17 C -0.062 4.062 18 C -0.078 4.078 19 O -0.289 6.289 20 C -0.036 4.036 21 C 0.061 3.939 22 H 0.077 0.923 23 N -0.358 5.358 24 C -0.379 4.379 25 H 0.087 0.913 26 C -0.259 4.259 27 N -0.612 5.612 28 Si 0.796 3.204 29 H -0.213 1.213 30 H -0.218 1.218 31 H -0.201 1.201 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.212 0.788 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.641 -4.323 -33.934 34.402 hybrid contribution 1.066 -0.141 1.868 2.155 sum -2.574 -4.464 -32.066 32.478 Atomic orbital electron populations 1.21643 0.91908 1.02640 1.02398 1.22404 0.97897 0.99207 0.92668 0.89991 1.22556 0.86664 0.95367 0.97123 1.48433 1.30931 1.43977 1.10748 1.20784 0.80792 0.78288 0.89512 1.90726 1.34598 1.46769 1.74889 1.23225 0.96970 0.91000 0.88117 0.83867 1.23215 1.04053 0.95781 0.94698 1.23077 1.05810 0.90279 0.97392 1.23070 0.94183 1.00293 0.83225 0.84534 1.21236 0.90603 0.77107 0.82629 1.90744 1.49445 1.47786 1.58549 1.47860 1.13933 1.66630 1.06594 1.21755 0.82770 1.01793 0.99862 1.22331 0.89983 1.01476 0.94038 1.89132 1.67562 1.52186 1.20058 1.23022 1.01370 0.98560 0.80668 1.21536 0.91590 0.93694 0.87091 0.92267 1.42353 1.86953 1.05167 1.01299 1.19502 1.41318 0.91919 0.85151 0.91254 1.25470 1.03274 0.95850 1.01353 1.69773 1.58446 1.02955 1.29989 0.85318 0.78053 0.76933 0.80087 1.21280 1.21830 1.20084 0.94164 0.89353 0.91774 0.87652 0.87734 0.92925 0.84271 0.83282 0.89740 0.92264 0.87501 0.93560 0.90110 0.88700 0.88954 0.94596 0.93593 0.78804 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.16 71.98 0.66 -2.08 16 2 C -0.10 -2.65 3.16 -9.60 -0.03 -2.68 16 3 H 0.08 2.23 7.99 -2.39 -0.02 2.21 16 4 C 0.10 2.01 5.89 86.73 0.51 2.52 16 5 N -0.61 -18.77 3.33 -811.77 -2.70 -21.47 16 6 C 0.52 17.91 7.23 87.66 0.63 18.55 16 7 O -0.59 -28.57 16.80 15.19 0.26 -28.32 16 8 C 0.07 1.49 3.10 30.53 0.09 1.59 16 9 H 0.14 1.86 8.13 -2.39 -0.02 1.84 16 10 C -0.14 -1.98 6.02 31.90 0.19 -1.78 16 11 C -0.13 -1.06 5.22 31.58 0.16 -0.90 16 12 C 0.05 0.91 2.98 30.22 0.09 1.00 16 13 H 0.14 1.19 7.21 -2.39 -0.02 1.18 16 14 C 0.50 11.82 6.87 87.66 0.60 12.42 16 15 O -0.59 -22.28 16.11 15.68 0.25 -22.03 16 16 N -0.62 -8.45 3.27 -871.88 -2.85 -11.31 16 17 C 0.08 1.04 10.44 127.77 1.33 2.37 16 18 C 0.06 0.12 9.20 127.77 1.18 1.29 16 19 O -0.37 -11.13 10.01 -121.18 -1.21 -12.34 16 20 C 0.09 3.63 6.62 86.86 0.58 4.20 16 21 C 0.17 6.54 3.14 46.39 0.15 6.68 16 22 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 23 N -0.72 -35.13 5.28 -316.36 -1.67 -36.80 16 24 C -0.25 -13.73 9.98 84.03 0.84 -12.89 16 25 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 26 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 27 N -0.96 -57.93 13.06 21.65 0.28 -57.64 16 28 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 30 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 31 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 32 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.24 8.07 -2.39 -0.02 1.22 16 35 H 0.11 1.28 6.31 -2.38 -0.02 1.26 16 36 H 0.10 1.35 7.77 -2.39 -0.02 1.34 16 37 H 0.05 1.11 8.05 -2.38 -0.02 1.09 16 38 H 0.14 0.76 6.62 -2.39 -0.02 0.74 16 39 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.08 0.76 7.30 -2.39 -0.02 0.75 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.57 8.07 -2.39 -0.02 0.55 16 43 H 0.05 0.90 7.42 -2.38 -0.02 0.88 16 44 H 0.08 -0.09 7.83 -2.39 -0.02 -0.11 16 45 H 0.09 -0.14 8.07 -2.38 -0.02 -0.16 16 46 H 0.09 -0.14 6.19 -2.38 -0.01 -0.15 16 47 H 0.04 1.66 7.99 -2.39 -0.02 1.64 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.38 19.52 7.71 -92.71 -0.71 18.80 16 50 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -96.86 398.85 2.06 -94.80 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.23 Total: 19.33 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 7.45 Total: 26.95 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -6.94 Total: -127.22 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -0.71 Total: -62.68 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -96.86 2.06 -94.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082739467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.086 kcal (2) G-P(sol) polarization free energy of solvation -96.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds