Wall clock time and date at job start Tue Mar 31 2020 23:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00553 * 2 1 4 4 C 1.52997 * 109.47302 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47261 * 64.99850 * 4 3 2 6 6 C 1.46768 * 124.34986 * 89.99950 * 5 4 3 7 7 C 1.54472 * 105.47416 * 196.99578 * 6 5 4 8 8 H 1.08999 * 110.96999 * 92.74121 * 7 6 5 9 9 C 1.50696 * 110.97300 * 216.46512 * 7 6 5 10 10 O 1.21284 * 119.99774 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00452 * 179.97438 * 9 7 6 12 12 C 1.46501 * 120.00049 * 180.02562 * 11 9 7 13 13 H 1.08999 * 110.63802 * 323.31577 * 12 11 9 14 14 C 1.55157 * 110.71881 * 86.45549 * 12 11 9 15 15 C 1.54912 * 101.57760 * 154.04186 * 14 12 11 16 16 N 1.47419 * 104.83414 * 322.98855 * 15 14 12 17 17 C 1.36938 * 125.65181 * 204.09117 * 16 15 14 18 18 H 1.07999 * 120.00325 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99817 * 0.03186 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.47027 * 108.70249 * 24.35971 * 16 15 14 26 26 H 1.09002 * 109.88128 * 239.29318 * 25 16 15 27 27 C 1.53000 * 109.88256 * 118.12826 * 25 16 15 28 28 C 1.54629 * 101.76698 * 334.58432 * 7 6 5 29 29 C 1.34419 * 124.34785 * 269.97596 * 5 4 3 30 30 O 1.21280 * 124.94390 * 359.61424 * 29 5 4 31 31 H 1.09000 * 109.46511 * 300.00481 * 1 2 3 32 32 H 1.09000 * 109.47105 * 59.99777 * 1 2 3 33 33 H 1.08996 * 109.47510 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46946 * 59.99780 * 3 2 1 35 35 H 1.09005 * 109.46801 * 300.00008 * 3 2 1 36 36 H 1.09002 * 109.47079 * 304.99987 * 4 3 2 37 37 H 1.09000 * 109.47360 * 185.00116 * 4 3 2 38 38 H 1.08999 * 110.24218 * 77.99350 * 6 5 4 39 39 H 1.09002 * 110.31332 * 316.03821 * 6 5 4 40 40 H 0.96994 * 119.99635 * 0.02562 * 11 9 7 41 41 H 1.08995 * 111.00388 * 35.97087 * 14 12 11 42 42 H 1.08998 * 111.03816 * 272.12719 * 14 12 11 43 43 H 1.09003 * 110.35985 * 204.15303 * 15 14 12 44 44 H 1.08999 * 110.36576 * 81.83272 * 15 14 12 45 45 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.47022 * 61.45357 * 27 25 16 47 47 H 1.09003 * 109.47184 * 181.45140 * 27 25 16 48 48 H 1.09000 * 109.47009 * 301.45604 * 27 25 16 49 49 H 1.09000 * 110.48825 * 143.47464 * 28 7 6 50 50 H 1.08996 * 110.48999 * 266.11795 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9757 0.5641 -1.2527 6 6 4.3111 1.3083 -2.4725 7 6 4.2872 0.2651 -3.6115 8 1 3.3065 0.2277 -4.0857 9 6 5.3635 0.5504 -4.6269 10 8 6.1013 1.5014 -4.4776 11 7 5.5063 -0.2511 -5.7010 12 6 6.5531 0.0260 -6.6878 13 1 6.6770 1.1002 -6.8251 14 6 7.8935 -0.6317 -6.2657 15 6 8.5923 -0.8200 -7.6353 16 7 7.5071 -1.1782 -8.5666 17 6 7.6565 -1.8743 -9.7364 18 1 6.7950 -2.0871 -10.3519 19 6 8.9152 -2.3065 -10.1309 20 7 9.9659 -2.0424 -9.3834 21 14 9.1190 -3.2566 -11.7262 22 1 8.6539 -2.4214 -12.8627 23 1 10.5509 -3.6000 -11.9185 24 1 8.3143 -4.5031 -11.6662 25 6 6.2387 -0.6588 -8.0347 26 1 5.5391 -1.4796 -7.8767 27 6 5.6419 0.3568 -9.0111 28 6 4.5827 -1.0451 -2.8453 29 6 4.1248 -0.7597 -1.4319 30 8 3.9217 -1.6027 -0.5839 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6887 1.8463 0.8900 35 1 1.6887 1.8463 -0.8900 36 1 3.8515 0.5680 0.8409 37 1 3.9787 2.1762 0.0889 38 1 5.3045 1.7483 -2.3847 39 1 3.5698 2.0858 -2.6573 40 1 4.9161 -1.0114 -5.8205 41 1 7.7214 -1.5919 -5.7795 42 1 8.4694 0.0326 -5.6213 43 1 9.3254 -1.6248 -7.5795 44 1 9.0699 0.1084 -7.9483 45 1 10.8455 -2.3441 -9.6592 46 1 5.4345 -0.1326 -9.9627 47 1 4.7155 0.7565 -8.5986 48 1 6.3507 1.1700 -9.1677 49 1 4.0144 -1.8723 -3.2707 50 1 5.6500 -1.2653 -2.8634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088602077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:44 Heat of formation + Delta-G solvation = -82.128246 kcal Electronic energy + Delta-G solvation = -30244.884197 eV Core-core repulsion = 26080.246158 eV Total energy + Delta-G solvation = -4164.638039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97524 -39.47676 -38.09670 -37.65725 -36.25422 -34.16182 -33.57730 -32.01081 -30.42585 -29.71220 -28.56707 -27.88308 -26.64397 -25.19331 -24.04229 -23.57834 -22.71379 -20.55315 -20.17501 -19.68037 -19.45534 -17.60448 -17.29797 -16.87535 -16.82171 -16.14670 -15.82656 -15.68669 -15.49288 -14.90765 -14.80581 -14.58279 -14.07637 -13.89620 -13.81048 -13.50629 -13.28410 -13.19295 -13.04399 -12.77201 -12.36447 -12.18226 -12.13507 -11.99392 -11.77837 -11.61366 -11.53242 -11.49512 -11.17802 -10.88265 -10.85629 -10.57515 -10.46808 -10.14820 -10.10937 -9.98928 -9.80558 -9.67486 -9.56304 -8.92494 -8.74555 -8.65783 -6.90832 -5.68222 -3.11212 2.47016 2.59872 2.68412 3.21448 3.38382 3.43011 3.44242 3.44507 4.02535 4.15971 4.45250 4.55629 4.63981 4.67368 4.72393 4.88517 4.94381 4.98679 5.00555 5.05407 5.23067 5.23976 5.35252 5.35453 5.39021 5.44420 5.49424 5.53262 5.59378 5.67747 5.77663 6.07661 6.20421 6.25893 6.26237 6.29832 6.48898 6.55399 6.67717 6.80847 6.82261 6.92464 7.05105 7.48157 7.59067 7.61346 7.82466 8.05655 8.25343 8.32745 9.17661 9.78618 10.42035 11.35135 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.002111 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.997020 B =13259.968974 C =13292.001098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.619 5.619 6 C 0.118 3.882 7 C -0.123 4.123 8 H 0.115 0.885 9 C 0.524 3.476 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.135 3.865 13 H 0.092 0.908 14 C -0.152 4.152 15 C 0.153 3.847 16 N -0.595 5.595 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.155 3.845 26 H 0.036 0.964 27 C -0.155 4.155 28 C -0.145 4.145 29 C 0.526 3.474 30 O -0.517 6.517 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.399 0.601 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.253 0.747 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.051 0.949 49 H 0.110 0.890 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 8.108 16.830 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.037 4.037 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.005 4.005 7 C -0.145 4.145 8 H 0.133 0.867 9 C 0.309 3.691 10 O -0.414 6.414 11 N -0.360 5.360 12 C 0.030 3.970 13 H 0.110 0.890 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.320 5.320 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.047 3.953 26 H 0.054 0.946 27 C -0.215 4.215 28 C -0.185 4.185 29 C 0.313 3.687 30 O -0.391 6.391 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.234 0.766 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.032 0.968 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.128 0.872 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.317 8.098 17.312 25.130 hybrid contribution -0.515 -0.393 -1.083 1.262 sum -16.832 7.705 16.229 24.618 Atomic orbital electron populations 1.22731 0.81355 1.02807 0.99601 1.88069 1.19268 1.26796 1.95274 1.23024 0.94523 0.85715 1.00484 1.21403 0.92045 0.99419 0.86459 1.48182 1.67444 1.07319 1.12514 1.21961 1.03042 0.93658 0.81852 1.22216 1.00286 0.96550 0.95456 0.86682 1.19961 0.84525 0.82657 0.81973 1.90713 1.45476 1.29458 1.75793 1.46040 1.35824 1.30548 1.23542 1.22175 0.86896 1.00337 0.87566 0.89021 1.23392 0.95801 0.99483 1.00540 1.21951 0.91447 1.00438 0.83410 1.44483 1.00961 1.63345 1.23206 1.18963 0.93419 1.26399 0.96224 0.90512 1.24795 0.95446 1.01273 0.99045 1.69784 0.98440 1.50797 1.37846 0.86157 0.76805 0.79695 0.82842 1.21237 1.21587 1.21159 1.20983 0.90322 0.93622 0.90350 0.94632 1.22246 0.98953 0.99856 1.00447 1.22348 1.04965 0.97737 0.93480 1.20637 0.76231 0.82148 0.89663 1.90736 1.50575 1.49136 1.48690 0.94274 0.94307 0.89650 0.92333 0.93077 0.89032 0.88584 0.88824 0.90121 0.76625 0.91950 0.91947 0.87329 0.96772 0.93608 0.92661 0.94358 0.92941 0.87157 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.92 10.27 -35.23 -0.36 -4.29 16 3 C 0.04 0.30 6.28 37.16 0.23 0.53 16 4 C 0.13 1.00 6.33 -4.04 -0.03 0.98 16 5 N -0.62 -6.00 2.90 -172.41 -0.50 -6.50 16 6 C 0.12 1.01 6.71 -3.12 -0.02 0.99 16 7 C -0.12 -1.09 3.54 -90.14 -0.32 -1.41 16 8 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.52 6.48 7.06 -10.99 -0.08 6.41 16 10 O -0.54 -8.58 15.23 5.55 0.08 -8.50 16 11 N -0.71 -9.07 5.21 -52.03 -0.27 -9.34 16 12 C 0.13 2.27 2.76 -66.09 -0.18 2.08 16 13 H 0.09 1.66 7.39 -51.93 -0.38 1.28 16 14 C -0.15 -2.88 6.77 -24.58 -0.17 -3.05 16 15 C 0.15 3.61 5.88 -2.53 -0.01 3.60 16 16 N -0.59 -14.34 3.13 -162.57 -0.51 -14.85 16 17 C -0.22 -5.89 9.87 -15.06 -0.15 -6.04 16 18 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 21 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.16 2.95 3.49 -66.95 -0.23 2.71 16 26 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 27 C -0.16 -2.73 9.14 37.16 0.34 -2.39 16 28 C -0.14 -1.39 6.41 -26.74 -0.17 -1.56 16 29 C 0.53 6.40 7.73 -10.86 -0.08 6.32 16 30 O -0.52 -8.31 17.50 5.56 0.10 -8.21 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.84 7.92 -51.93 -0.41 0.43 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.94 6.96 -51.93 -0.36 0.58 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.40 4.16 8.33 -40.82 -0.34 3.82 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.05 1.01 8.02 -51.93 -0.42 0.60 16 47 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.11 1.12 7.89 -51.93 -0.41 0.71 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -34.25 403.89 -8.18 -42.43 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.49 Total: 2.14 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 0.15 Total: 10.14 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.72 Total: -56.37 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.18 Total: -20.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.25 -8.18 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088602077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.698 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds