Wall clock time and date at job start Tue Mar 31 2020 23:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00553 * 2 1 4 4 C 1.52997 * 109.47302 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47261 * 64.99850 * 4 3 2 6 6 C 1.46768 * 124.34986 * 89.99950 * 5 4 3 7 7 C 1.54472 * 105.47416 * 196.99578 * 6 5 4 8 8 H 1.08999 * 110.96999 * 92.74121 * 7 6 5 9 9 C 1.50696 * 110.97300 * 216.46512 * 7 6 5 10 10 O 1.21284 * 119.99774 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00452 * 179.97438 * 9 7 6 12 12 C 1.46501 * 120.00049 * 180.02562 * 11 9 7 13 13 H 1.08999 * 110.63802 * 323.31577 * 12 11 9 14 14 C 1.55157 * 110.71881 * 86.45549 * 12 11 9 15 15 C 1.54912 * 101.57760 * 154.04186 * 14 12 11 16 16 N 1.47419 * 104.83414 * 322.98855 * 15 14 12 17 17 C 1.36938 * 125.65181 * 204.09117 * 16 15 14 18 18 H 1.07999 * 120.00325 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99817 * 0.03186 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.47027 * 108.70249 * 24.35971 * 16 15 14 26 26 H 1.09002 * 109.88128 * 239.29318 * 25 16 15 27 27 C 1.53000 * 109.88256 * 118.12826 * 25 16 15 28 28 C 1.54629 * 101.76698 * 334.58432 * 7 6 5 29 29 C 1.34419 * 124.34785 * 269.97596 * 5 4 3 30 30 O 1.21280 * 124.94390 * 359.61424 * 29 5 4 31 31 H 1.09000 * 109.46511 * 300.00481 * 1 2 3 32 32 H 1.09000 * 109.47105 * 59.99777 * 1 2 3 33 33 H 1.08996 * 109.47510 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46946 * 59.99780 * 3 2 1 35 35 H 1.09005 * 109.46801 * 300.00008 * 3 2 1 36 36 H 1.09002 * 109.47079 * 304.99987 * 4 3 2 37 37 H 1.09000 * 109.47360 * 185.00116 * 4 3 2 38 38 H 1.08999 * 110.24218 * 77.99350 * 6 5 4 39 39 H 1.09002 * 110.31332 * 316.03821 * 6 5 4 40 40 H 0.96994 * 119.99635 * 0.02562 * 11 9 7 41 41 H 1.08995 * 111.00388 * 35.97087 * 14 12 11 42 42 H 1.08998 * 111.03816 * 272.12719 * 14 12 11 43 43 H 1.09003 * 110.35985 * 204.15303 * 15 14 12 44 44 H 1.08999 * 110.36576 * 81.83272 * 15 14 12 45 45 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.47022 * 61.45357 * 27 25 16 47 47 H 1.09003 * 109.47184 * 181.45140 * 27 25 16 48 48 H 1.09000 * 109.47009 * 301.45604 * 27 25 16 49 49 H 1.09000 * 110.48825 * 143.47464 * 28 7 6 50 50 H 1.08996 * 110.48999 * 266.11795 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9757 0.5641 -1.2527 6 6 4.3111 1.3083 -2.4725 7 6 4.2872 0.2651 -3.6115 8 1 3.3065 0.2277 -4.0857 9 6 5.3635 0.5504 -4.6269 10 8 6.1013 1.5014 -4.4776 11 7 5.5063 -0.2511 -5.7010 12 6 6.5531 0.0260 -6.6878 13 1 6.6770 1.1002 -6.8251 14 6 7.8935 -0.6317 -6.2657 15 6 8.5923 -0.8200 -7.6353 16 7 7.5071 -1.1782 -8.5666 17 6 7.6565 -1.8743 -9.7364 18 1 6.7950 -2.0871 -10.3519 19 6 8.9152 -2.3065 -10.1309 20 7 9.9659 -2.0424 -9.3834 21 14 9.1190 -3.2566 -11.7262 22 1 8.6539 -2.4214 -12.8627 23 1 10.5509 -3.6000 -11.9185 24 1 8.3143 -4.5031 -11.6662 25 6 6.2387 -0.6588 -8.0347 26 1 5.5391 -1.4796 -7.8767 27 6 5.6419 0.3568 -9.0111 28 6 4.5827 -1.0451 -2.8453 29 6 4.1248 -0.7597 -1.4319 30 8 3.9217 -1.6027 -0.5839 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6887 1.8463 0.8900 35 1 1.6887 1.8463 -0.8900 36 1 3.8515 0.5680 0.8409 37 1 3.9787 2.1762 0.0889 38 1 5.3045 1.7483 -2.3847 39 1 3.5698 2.0858 -2.6573 40 1 4.9161 -1.0114 -5.8205 41 1 7.7214 -1.5919 -5.7795 42 1 8.4694 0.0326 -5.6213 43 1 9.3254 -1.6248 -7.5795 44 1 9.0699 0.1084 -7.9483 45 1 10.8455 -2.3441 -9.6592 46 1 5.4345 -0.1326 -9.9627 47 1 4.7155 0.7565 -8.5986 48 1 6.3507 1.1700 -9.1677 49 1 4.0144 -1.8723 -3.2707 50 1 5.6500 -1.2653 -2.8634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088602077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:43 Heat of formation + Delta-G solvation = -106.654456 kcal Electronic energy + Delta-G solvation = -30245.947734 eV Core-core repulsion = 26080.246158 eV Total energy + Delta-G solvation = -4165.701575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85856 -40.59726 -39.16183 -38.70650 -37.20561 -35.58366 -34.43783 -33.64618 -32.01908 -30.73682 -29.97893 -28.69144 -27.22698 -26.61552 -25.82213 -24.46414 -23.50880 -22.10626 -21.48670 -20.92626 -20.39353 -18.69960 -18.49202 -18.06500 -17.50679 -17.40408 -16.69461 -16.61373 -16.44295 -16.20107 -15.87902 -15.68668 -15.60199 -15.26634 -14.73094 -14.62067 -14.44521 -14.10132 -14.01737 -13.92511 -13.60874 -13.54824 -13.19846 -12.98846 -12.91349 -12.71611 -12.69024 -12.58392 -12.49620 -12.31640 -12.17526 -12.06532 -12.05132 -11.97343 -11.54026 -11.40830 -11.09203 -10.71569 -10.67874 -10.57101 -9.98541 -9.69246 -8.86940 -7.72777 -5.17217 1.49510 1.51947 1.55962 1.58055 1.63756 1.89280 2.21882 2.54098 2.92812 3.22972 3.37651 3.39883 3.60190 3.82494 3.89068 3.93994 4.00755 4.09902 4.17050 4.20735 4.28240 4.40097 4.46050 4.51239 4.54538 4.56688 4.61475 4.65632 4.66931 4.73594 4.80291 4.85837 4.85931 4.88307 4.98072 5.00328 5.09986 5.18403 5.41562 5.52793 5.56716 5.63458 5.66944 5.83492 6.10948 6.31064 6.33466 6.59290 7.13613 7.19183 7.26686 7.82129 8.45146 9.28884 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.002111 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.997020 B =13259.968974 C =13292.001098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.040 3.960 4 C 0.121 3.879 5 N -0.614 5.614 6 C 0.119 3.881 7 C -0.107 4.107 8 H 0.150 0.850 9 C 0.529 3.471 10 O -0.572 6.572 11 N -0.700 5.700 12 C 0.155 3.845 13 H 0.082 0.918 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.614 5.614 17 C -0.225 4.225 18 H 0.086 0.914 19 C -0.071 4.071 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.276 1.276 25 C 0.150 3.850 26 H 0.054 0.946 27 C -0.147 4.147 28 C -0.140 4.140 29 C 0.516 3.484 30 O -0.566 6.566 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.415 0.585 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.075 0.925 44 H -0.016 1.016 45 H 0.245 0.755 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.128 0.872 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 8.988 16.941 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C -0.038 4.038 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.004 4.004 7 C -0.128 4.128 8 H 0.168 0.832 9 C 0.316 3.684 10 O -0.451 6.451 11 N -0.351 5.351 12 C 0.049 3.951 13 H 0.100 0.900 14 C -0.178 4.178 15 C 0.031 3.969 16 N -0.340 5.340 17 C -0.354 4.354 18 H 0.103 0.897 19 C -0.263 4.263 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.202 1.202 25 C 0.043 3.957 26 H 0.072 0.928 27 C -0.206 4.206 28 C -0.181 4.181 29 C 0.305 3.695 30 O -0.445 6.445 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.252 0.748 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.002 0.998 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.053 0.947 49 H 0.146 0.854 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.339 9.010 17.429 27.549 hybrid contribution 0.379 -0.591 -1.059 1.271 sum -18.960 8.418 16.370 26.426 Atomic orbital electron populations 1.22831 0.80075 1.03038 1.00799 1.88029 1.20904 1.28744 1.95561 1.23133 0.93619 0.84912 1.02091 1.21644 0.93047 1.00335 0.84998 1.48307 1.66193 1.06764 1.13447 1.22036 1.03290 0.93944 0.81122 1.22171 1.00291 0.95940 0.94397 0.83227 1.20470 0.84511 0.81615 0.81812 1.90717 1.46882 1.31011 1.76470 1.45825 1.35028 1.31350 1.22938 1.21685 0.86851 0.99153 0.87439 0.89999 1.23181 0.96751 1.00192 0.97668 1.21663 0.91553 0.97608 0.86123 1.44728 1.02938 1.63460 1.22833 1.19344 0.93565 1.25516 0.96936 0.89663 1.25607 0.95492 1.03010 1.02199 1.70045 0.98425 1.52300 1.39339 0.85169 0.76093 0.78707 0.79469 1.20611 1.22546 1.20151 1.21221 0.88512 0.94527 0.91438 0.92847 1.22131 1.00047 0.98704 0.99737 1.22336 1.04710 0.98799 0.92226 1.21056 0.75767 0.82587 0.90128 1.90708 1.52951 1.50552 1.50259 0.92948 0.93152 0.90039 0.90353 0.91675 0.91091 0.85505 0.90175 0.87273 0.74752 0.91256 0.91663 0.90753 0.99808 0.94549 0.93638 0.90616 0.94676 0.85386 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.06 10.27 -148.98 -1.53 -9.59 16 3 C 0.04 0.48 6.28 71.98 0.45 0.93 16 4 C 0.12 1.67 6.33 86.38 0.55 2.21 16 5 N -0.61 -10.63 2.90 -817.97 -2.37 -13.00 16 6 C 0.12 1.66 6.71 86.83 0.58 2.24 16 7 C -0.11 -1.49 3.54 -10.49 -0.04 -1.53 16 8 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 9 C 0.53 11.49 7.06 87.66 0.62 12.11 16 10 O -0.57 -17.05 15.23 -3.04 -0.05 -17.10 16 11 N -0.70 -15.68 5.21 -436.90 -2.28 -17.95 16 12 C 0.15 4.93 2.76 46.18 0.13 5.06 16 13 H 0.08 2.85 7.39 -2.39 -0.02 2.83 16 14 C -0.14 -5.18 6.77 31.99 0.22 -4.97 16 15 C 0.16 7.62 5.88 86.86 0.51 8.13 16 16 N -0.61 -29.68 3.13 -668.24 -2.09 -31.77 16 17 C -0.22 -11.94 9.87 84.03 0.83 -11.11 16 18 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 20 N -0.95 -56.15 10.09 21.65 0.22 -55.93 16 21 Si 0.98 44.83 29.55 68.60 2.03 46.86 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 C 0.15 5.41 3.49 45.34 0.16 5.56 16 26 H 0.05 1.78 7.70 -2.39 -0.02 1.77 16 27 C -0.15 -4.85 9.14 71.98 0.66 -4.19 16 28 C -0.14 -2.37 6.41 30.59 0.20 -2.17 16 29 C 0.52 11.96 7.73 87.90 0.68 12.64 16 30 O -0.57 -18.31 17.50 -3.03 -0.05 -18.36 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.07 1.28 7.92 -2.39 -0.02 1.27 16 37 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.41 6.96 -2.39 -0.02 1.40 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.42 6.95 8.33 -92.71 -0.77 6.18 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.07 4.16 5.88 -2.39 -0.01 4.15 16 44 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.10 1.92 7.89 -2.39 -0.02 1.91 16 Total: -1.00 -77.79 403.89 1.29 -76.50 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.16 Total: 17.25 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 7.25 Total: 23.09 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -6.52 Total: -118.66 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.63 Total: -45.04 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -77.79 1.29 -76.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088602077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.153 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds