Wall clock time and date at job start Tue Mar 31 2020 23:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 113.99675 * 2 1 4 4 H 1.08992 * 110.89077 * 32.42715 * 3 2 1 5 5 C 1.55546 * 110.99954 * 156.33635 * 3 2 1 6 6 C 1.54327 * 102.76481 * 153.60862 * 5 3 2 7 7 H 1.08992 * 109.88493 * 218.26513 * 6 5 3 8 8 C 1.50702 * 109.87922 * 97.25169 * 6 5 3 9 9 O 1.21284 * 120.00268 * 260.32217 * 8 6 5 10 10 N 1.34779 * 120.00081 * 80.31725 * 8 6 5 11 11 C 1.46491 * 120.00267 * 179.97438 * 10 8 6 12 12 H 1.09006 * 110.78300 * 328.24405 * 11 10 8 13 13 C 1.55282 * 110.75893 * 91.38111 * 11 10 8 14 14 C 1.54905 * 101.53029 * 153.77787 * 13 11 10 15 15 N 1.47419 * 104.92834 * 323.13017 * 14 13 11 16 16 C 1.36943 * 125.64787 * 204.05668 * 15 14 13 17 17 H 1.07999 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99832 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47632 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47079 * 120.00342 * 20 18 16 23 23 H 1.48506 * 109.47094 * 240.00015 * 20 18 16 24 24 C 1.47023 * 108.70585 * 24.07052 * 15 14 13 25 25 H 1.09003 * 109.88678 * 239.36817 * 24 15 14 26 26 C 1.53002 * 109.88116 * 118.35926 * 24 15 14 27 27 N 1.47024 * 107.39756 * 337.76576 * 6 5 3 28 28 C 1.34777 * 125.64587 * 178.98302 * 27 6 5 29 29 C 1.50693 * 120.00192 * 179.97438 * 28 27 6 30 30 O 1.21286 * 119.99845 * 359.97438 * 28 27 6 31 31 C 1.47420 * 108.70538 * 359.00846 * 27 6 5 32 32 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47634 * 299.99828 * 1 2 3 34 34 H 1.08998 * 109.47511 * 60.00094 * 1 2 3 35 35 H 1.09005 * 110.78444 * 35.31861 * 5 3 2 36 36 H 1.09004 * 110.83431 * 271.93074 * 5 3 2 37 37 H 0.97002 * 119.99598 * 0.02562 * 10 8 6 38 38 H 1.09001 * 110.95548 * 35.74946 * 13 11 10 39 39 H 1.08996 * 111.09853 * 271.87010 * 13 11 10 40 40 H 1.09002 * 110.36692 * 204.23391 * 14 13 11 41 41 H 1.08995 * 110.36664 * 82.02192 * 14 13 11 42 42 H 0.97000 * 120.00077 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47094 * 61.45437 * 26 24 15 44 44 H 1.08994 * 109.47380 * 181.45573 * 26 24 15 45 45 H 1.08996 * 109.47109 * 301.45766 * 26 24 15 46 46 H 1.09004 * 109.47131 * 359.97438 * 29 28 27 47 47 H 1.08995 * 109.47670 * 119.99460 * 29 28 27 48 48 H 1.09005 * 109.47354 * 240.00151 * 29 28 27 49 49 H 1.09007 * 110.36377 * 142.97248 * 31 27 6 50 50 H 1.08995 * 110.37055 * 265.29539 * 31 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5460 5 6 3.4519 1.2738 0.5828 6 6 4.1209 2.4876 -0.0961 7 1 5.1533 2.2478 -0.3500 8 6 4.0836 3.6770 0.8286 9 8 3.2379 4.5337 0.6809 10 7 4.9899 3.7886 1.8199 11 6 4.9540 4.9450 2.7185 12 1 4.5875 5.8291 2.1966 13 6 4.0801 4.6453 3.9666 14 6 4.7006 5.6012 5.0158 15 7 6.1470 5.5901 4.7312 16 6 7.1390 5.8868 5.6274 17 1 8.1735 5.8502 5.3194 18 6 6.8149 6.2345 6.9316 19 7 5.5542 6.2786 7.3070 20 14 8.1681 6.6399 8.1538 21 1 9.4897 6.5171 7.4879 22 1 7.9891 8.0289 8.6477 23 1 8.1011 5.6953 9.2978 24 6 6.3481 5.2081 3.3257 25 1 6.9556 4.3048 3.2703 26 6 7.0381 6.3461 2.5709 27 7 3.3602 2.7814 -1.3195 28 6 3.6173 3.7844 -2.1823 29 6 2.7521 3.9693 -3.4022 30 8 4.5451 4.5381 -1.9770 31 6 2.2695 1.7978 -1.4458 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 3.9601 0.3496 0.3078 36 1 3.4351 1.3983 1.6656 37 1 5.6664 3.1035 1.9379 38 1 4.1849 3.6052 4.2752 39 1 3.0347 4.8929 3.7822 40 1 4.5094 5.2334 6.0239 41 1 4.2983 6.6072 4.8972 42 1 5.3277 6.5212 8.2184 43 1 8.0162 6.5350 3.0133 44 1 7.1606 6.0663 1.5246 45 1 6.4292 7.2477 2.6370 46 1 1.9767 3.2033 -3.4171 47 1 2.2886 4.9553 -3.3729 48 1 3.3653 3.8825 -4.2992 49 1 1.3757 2.2724 -1.8510 50 1 2.5793 0.9670 -2.0796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088771907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:41 Heat of formation + Delta-G solvation = -74.915015 kcal Electronic energy + Delta-G solvation = -31105.111339 eV Core-core repulsion = 26940.786089 eV Total energy + Delta-G solvation = -4164.325250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95442 -39.08632 -38.55907 -37.47966 -36.26087 -34.00375 -32.38121 -31.77671 -30.36187 -29.92347 -29.19422 -28.29581 -26.90848 -25.04305 -23.98786 -23.67924 -22.08401 -20.89580 -20.12330 -19.94127 -19.09798 -17.78788 -17.45245 -16.83436 -16.58824 -16.09335 -15.70242 -15.36062 -15.16921 -14.97752 -14.65644 -14.59254 -13.97566 -13.92035 -13.66384 -13.38930 -13.20364 -13.04748 -13.03860 -12.77351 -12.45350 -12.22954 -12.11560 -12.05625 -11.91954 -11.67441 -11.51308 -11.20854 -11.11589 -10.84885 -10.80659 -10.52856 -10.39838 -10.26781 -10.05973 -9.93407 -9.78665 -9.71746 -9.55662 -8.84623 -8.66478 -8.56565 -6.85849 -5.64530 -3.07064 2.35164 2.57992 2.82809 3.27123 3.39955 3.43810 3.46939 3.48515 3.97507 4.11152 4.48640 4.55736 4.60555 4.74253 4.77704 4.87839 4.94676 4.99672 5.02136 5.15493 5.19030 5.30515 5.31309 5.36091 5.44421 5.45914 5.52661 5.55605 5.58168 5.65490 5.86015 5.88574 6.16452 6.28559 6.37087 6.40099 6.56764 6.65073 6.69924 6.72950 6.92291 7.15185 7.22057 7.52906 7.64413 7.74642 7.85831 8.00641 8.35296 8.44227 9.21902 9.82769 10.46873 11.38948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.002757 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.306167 B =10151.993725 C =11225.496724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.116 4.116 6 C 0.119 3.881 7 H 0.102 0.898 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.712 5.712 11 C 0.137 3.863 12 H 0.092 0.908 13 C -0.152 4.152 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.218 4.218 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.156 3.844 25 H 0.036 0.964 26 C -0.155 4.155 27 N -0.600 5.600 28 C 0.533 3.467 29 C -0.167 4.167 30 O -0.530 6.530 31 C 0.082 3.918 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.397 0.603 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.013 0.987 42 H 0.251 0.749 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 -14.460 -19.480 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.016 3.984 4 H 0.104 0.896 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.120 0.880 8 C 0.294 3.706 9 O -0.405 6.405 10 N -0.362 5.362 11 C 0.032 3.968 12 H 0.110 0.890 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.321 5.321 16 C -0.346 4.346 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.047 3.953 25 H 0.054 0.946 26 C -0.215 4.215 27 N -0.337 5.337 28 C 0.323 3.677 29 C -0.226 4.226 30 O -0.405 6.405 31 C -0.042 4.042 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.231 0.769 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.031 0.969 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.100 0.900 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.958 -13.438 -19.323 25.556 hybrid contribution 0.747 0.225 0.674 1.031 sum -9.211 -13.213 -18.649 24.642 Atomic orbital electron populations 1.22862 0.80452 1.03094 1.00449 1.87910 1.20193 1.26142 1.94768 1.23331 0.94998 0.85391 0.94637 0.89583 1.22746 0.94174 0.96985 1.01467 1.21507 0.98328 0.93469 0.85570 0.88020 1.20546 0.81742 0.87373 0.80989 1.90677 1.36887 1.41501 1.71475 1.45988 1.32911 1.25642 1.31703 1.22156 0.97115 0.87966 0.89537 0.88972 1.23411 0.98345 1.01095 0.96325 1.21933 0.82261 0.94571 0.98436 1.44502 1.02777 1.80498 1.04274 1.19081 0.87175 1.38601 0.89750 0.90399 1.24785 0.96466 1.02049 0.97384 1.69804 1.14868 1.54899 1.17428 0.86007 0.80672 0.77646 0.81218 1.20550 1.21793 1.21788 1.20992 0.92162 0.95644 0.86452 0.94643 1.22230 1.01256 0.99905 0.98073 1.48132 1.31816 1.30862 1.22898 1.20479 0.85125 0.78385 0.83753 1.21864 1.00200 1.04684 0.95854 1.90770 1.31383 1.42880 1.75448 1.22794 0.90643 0.92236 0.98484 0.89255 0.93525 0.93802 0.88088 0.88516 0.76866 0.92015 0.92194 0.87331 0.96860 0.93787 0.92740 0.94204 0.93030 0.90590 0.88505 0.88665 0.90027 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.89 101.05 1.10 1.26 16 2 O -0.37 -3.04 10.52 -35.23 -0.37 -3.41 16 3 C 0.08 0.64 3.50 -24.37 -0.09 0.56 16 4 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 5 C -0.12 -1.01 6.25 -24.68 -0.15 -1.16 16 6 C 0.12 1.36 3.28 -68.10 -0.22 1.14 16 7 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 8 C 0.51 7.95 6.19 -10.98 -0.07 7.89 16 9 O -0.53 -10.33 15.60 5.55 0.09 -10.24 16 10 N -0.71 -10.95 5.18 -51.97 -0.27 -11.21 16 11 C 0.14 2.61 2.84 -66.03 -0.19 2.42 16 12 H 0.09 1.96 7.26 -51.93 -0.38 1.59 16 13 C -0.15 -3.04 6.78 -24.52 -0.17 -3.20 16 14 C 0.15 3.77 5.88 -2.53 -0.01 3.76 16 15 N -0.60 -15.05 3.13 -162.58 -0.51 -15.56 16 16 C -0.22 -5.98 9.87 -15.06 -0.15 -6.13 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.16 3.24 3.48 -66.95 -0.23 3.01 16 25 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 26 C -0.16 -3.10 9.14 37.16 0.34 -2.76 16 27 N -0.60 -6.73 2.79 -164.32 -0.46 -7.18 16 28 C 0.53 6.95 7.30 -10.99 -0.08 6.87 16 29 C -0.17 -1.34 10.19 36.00 0.37 -0.97 16 30 O -0.53 -9.49 16.71 5.55 0.09 -9.40 16 31 C 0.08 0.63 6.12 -2.53 -0.02 0.62 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.26 8.11 -51.93 -0.42 -0.16 16 34 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.88 7.82 -51.93 -0.41 0.47 16 37 H 0.40 5.02 8.37 -40.82 -0.34 4.68 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.05 1.10 8.02 -51.93 -0.42 0.69 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.08 0.41 6.09 -51.93 -0.32 0.10 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.51 6.94 -51.93 -0.36 0.15 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -35.93 400.04 -7.90 -43.83 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.37 Total: 3.49 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 0.33 Total: 12.86 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.68 Total: -60.20 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.19 Total: -23.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.93 -7.90 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088771907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.082 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds