Wall clock time and date at job start Tue Mar 31 2020 23:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 113.99675 * 2 1 4 4 H 1.08992 * 110.89077 * 32.42715 * 3 2 1 5 5 C 1.55546 * 110.99954 * 156.33635 * 3 2 1 6 6 C 1.54327 * 102.76481 * 153.60862 * 5 3 2 7 7 H 1.08992 * 109.88493 * 218.26513 * 6 5 3 8 8 C 1.50702 * 109.87922 * 97.25169 * 6 5 3 9 9 O 1.21284 * 120.00268 * 260.32217 * 8 6 5 10 10 N 1.34779 * 120.00081 * 80.31725 * 8 6 5 11 11 C 1.46491 * 120.00267 * 179.97438 * 10 8 6 12 12 H 1.09006 * 110.78300 * 328.24405 * 11 10 8 13 13 C 1.55282 * 110.75893 * 91.38111 * 11 10 8 14 14 C 1.54905 * 101.53029 * 153.77787 * 13 11 10 15 15 N 1.47419 * 104.92834 * 323.13017 * 14 13 11 16 16 C 1.36943 * 125.64787 * 204.05668 * 15 14 13 17 17 H 1.07999 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99832 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47632 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47079 * 120.00342 * 20 18 16 23 23 H 1.48506 * 109.47094 * 240.00015 * 20 18 16 24 24 C 1.47023 * 108.70585 * 24.07052 * 15 14 13 25 25 H 1.09003 * 109.88678 * 239.36817 * 24 15 14 26 26 C 1.53002 * 109.88116 * 118.35926 * 24 15 14 27 27 N 1.47024 * 107.39756 * 337.76576 * 6 5 3 28 28 C 1.34777 * 125.64587 * 178.98302 * 27 6 5 29 29 C 1.50693 * 120.00192 * 179.97438 * 28 27 6 30 30 O 1.21286 * 119.99845 * 359.97438 * 28 27 6 31 31 C 1.47420 * 108.70538 * 359.00846 * 27 6 5 32 32 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47634 * 299.99828 * 1 2 3 34 34 H 1.08998 * 109.47511 * 60.00094 * 1 2 3 35 35 H 1.09005 * 110.78444 * 35.31861 * 5 3 2 36 36 H 1.09004 * 110.83431 * 271.93074 * 5 3 2 37 37 H 0.97002 * 119.99598 * 0.02562 * 10 8 6 38 38 H 1.09001 * 110.95548 * 35.74946 * 13 11 10 39 39 H 1.08996 * 111.09853 * 271.87010 * 13 11 10 40 40 H 1.09002 * 110.36692 * 204.23391 * 14 13 11 41 41 H 1.08995 * 110.36664 * 82.02192 * 14 13 11 42 42 H 0.97000 * 120.00077 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47094 * 61.45437 * 26 24 15 44 44 H 1.08994 * 109.47380 * 181.45573 * 26 24 15 45 45 H 1.08996 * 109.47109 * 301.45766 * 26 24 15 46 46 H 1.09004 * 109.47131 * 359.97438 * 29 28 27 47 47 H 1.08995 * 109.47670 * 119.99460 * 29 28 27 48 48 H 1.09005 * 109.47354 * 240.00151 * 29 28 27 49 49 H 1.09007 * 110.36377 * 142.97248 * 31 27 6 50 50 H 1.08995 * 110.37055 * 265.29539 * 31 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5460 5 6 3.4519 1.2738 0.5828 6 6 4.1209 2.4876 -0.0961 7 1 5.1533 2.2478 -0.3500 8 6 4.0836 3.6770 0.8286 9 8 3.2379 4.5337 0.6809 10 7 4.9899 3.7886 1.8199 11 6 4.9540 4.9450 2.7185 12 1 4.5875 5.8291 2.1966 13 6 4.0801 4.6453 3.9666 14 6 4.7006 5.6012 5.0158 15 7 6.1470 5.5901 4.7312 16 6 7.1390 5.8868 5.6274 17 1 8.1735 5.8502 5.3194 18 6 6.8149 6.2345 6.9316 19 7 5.5542 6.2786 7.3070 20 14 8.1681 6.6399 8.1538 21 1 9.4897 6.5171 7.4879 22 1 7.9891 8.0289 8.6477 23 1 8.1011 5.6953 9.2978 24 6 6.3481 5.2081 3.3257 25 1 6.9556 4.3048 3.2703 26 6 7.0381 6.3461 2.5709 27 7 3.3602 2.7814 -1.3195 28 6 3.6173 3.7844 -2.1823 29 6 2.7521 3.9693 -3.4022 30 8 4.5451 4.5381 -1.9770 31 6 2.2695 1.7978 -1.4458 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 3.9601 0.3496 0.3078 36 1 3.4351 1.3983 1.6656 37 1 5.6664 3.1035 1.9379 38 1 4.1849 3.6052 4.2752 39 1 3.0347 4.8929 3.7822 40 1 4.5094 5.2334 6.0239 41 1 4.2983 6.6072 4.8972 42 1 5.3277 6.5212 8.2184 43 1 8.0162 6.5350 3.0133 44 1 7.1606 6.0663 1.5246 45 1 6.4292 7.2477 2.6370 46 1 1.9767 3.2033 -3.4171 47 1 2.2886 4.9553 -3.3729 48 1 3.3653 3.8825 -4.2992 49 1 1.3757 2.2724 -1.8510 50 1 2.5793 0.9670 -2.0796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088771907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:40 Heat of formation + Delta-G solvation = -101.377223 kcal Electronic energy + Delta-G solvation = -31106.258827 eV Core-core repulsion = 26940.786089 eV Total energy + Delta-G solvation = -4165.472737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93714 -40.41447 -39.36317 -38.98600 -37.13367 -35.63055 -33.96644 -32.91273 -32.10430 -30.88355 -30.36595 -29.54954 -27.38361 -26.63091 -25.88140 -24.68260 -22.97313 -22.22067 -21.60826 -21.51308 -20.21043 -18.78996 -18.68481 -18.34410 -17.69212 -17.16024 -16.84860 -16.53698 -16.20542 -16.00753 -15.76925 -15.72548 -15.66384 -15.35307 -14.80321 -14.46667 -14.32316 -14.06251 -13.98084 -13.88788 -13.82168 -13.54575 -13.28563 -13.18452 -13.00760 -12.97018 -12.76240 -12.67109 -12.58041 -12.35930 -12.23957 -12.13171 -11.95990 -11.86750 -11.61248 -11.47789 -11.14214 -11.01081 -10.75513 -10.61156 -10.05004 -9.79406 -8.92097 -7.76089 -5.21406 1.38498 1.47863 1.48661 1.58363 1.58871 1.82309 2.17112 2.51306 2.73274 3.28958 3.34306 3.40324 3.49532 3.72762 3.81940 3.82016 3.91230 4.01784 4.09164 4.16315 4.24999 4.39361 4.45450 4.49241 4.58055 4.58325 4.59752 4.62755 4.64706 4.73704 4.75696 4.80475 4.87594 4.90073 4.93701 4.98157 5.00316 5.08047 5.10147 5.29301 5.48419 5.57380 5.58262 5.77855 6.15100 6.28769 6.35711 6.52998 7.07272 7.10042 7.21900 7.76886 8.40738 9.26100 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.002757 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.306167 B =10151.993725 C =11225.496724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.380 6.380 3 C 0.077 3.923 4 H 0.070 0.930 5 C -0.109 4.109 6 C 0.120 3.880 7 H 0.117 0.883 8 C 0.507 3.493 9 O -0.572 6.572 10 N -0.703 5.703 11 C 0.154 3.846 12 H 0.067 0.933 13 C -0.134 4.134 14 C 0.158 3.842 15 N -0.613 5.613 16 C -0.227 4.227 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.297 1.297 23 H -0.290 1.290 24 C 0.152 3.848 25 H 0.055 0.945 26 C -0.146 4.146 27 N -0.601 5.601 28 C 0.520 3.480 29 C -0.160 4.160 30 O -0.591 6.591 31 C 0.082 3.918 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.414 0.586 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.081 0.919 41 H -0.019 1.019 42 H 0.246 0.754 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -17.026 -21.390 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.298 6.298 3 C 0.018 3.982 4 H 0.088 0.912 5 C -0.147 4.147 6 C 0.012 3.988 7 H 0.134 0.866 8 C 0.293 3.707 9 O -0.451 6.451 10 N -0.355 5.355 11 C 0.048 3.952 12 H 0.086 0.914 13 C -0.173 4.173 14 C 0.033 3.967 15 N -0.338 5.338 16 C -0.356 4.356 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.190 1.190 22 H -0.224 1.224 23 H -0.217 1.217 24 C 0.045 3.955 25 H 0.073 0.927 26 C -0.206 4.206 27 N -0.336 5.336 28 C 0.312 3.688 29 C -0.218 4.218 30 O -0.471 6.471 31 C -0.040 4.040 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.111 0.889 37 H 0.251 0.749 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.099 0.901 41 H -0.001 1.001 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.129 0.871 49 H 0.118 0.882 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.853 -16.079 -21.270 28.426 hybrid contribution 0.653 1.001 1.233 1.717 sum -9.200 -15.078 -20.038 26.711 Atomic orbital electron populations 1.23048 0.79231 1.04254 1.00983 1.87892 1.21519 1.25563 1.94842 1.23216 0.94593 0.85458 0.94949 0.91192 1.22764 0.94431 0.96495 1.00972 1.21607 0.99851 0.92211 0.85091 0.86585 1.21379 0.80543 0.88017 0.80800 1.90657 1.38548 1.43370 1.72477 1.45804 1.33622 1.24862 1.31173 1.21662 0.95589 0.88597 0.89344 0.91433 1.23196 0.98346 1.00560 0.95248 1.21669 0.82786 0.93788 0.98507 1.44732 1.02547 1.80484 1.06018 1.19432 0.87973 1.37858 0.90299 0.89768 1.25614 0.98556 1.02657 0.99226 1.70041 1.16658 1.55989 1.17369 0.84988 0.78723 0.76685 0.78798 1.18998 1.22421 1.21733 1.21172 0.93454 0.96417 0.84445 0.92747 1.22116 1.00417 0.98773 0.99249 1.48308 1.32341 1.30898 1.22079 1.21417 0.84805 0.77702 0.84909 1.21907 1.00346 1.05600 0.93987 1.90732 1.34106 1.45132 1.77102 1.23018 0.90338 0.92198 0.98455 0.87826 0.93991 0.92338 0.85585 0.88939 0.74930 0.90485 0.91771 0.90120 1.00144 0.94396 0.93084 0.92004 0.94897 0.87483 0.88736 0.87097 0.88224 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.89 113.37 1.23 1.42 16 2 O -0.38 -5.11 10.52 -148.98 -1.57 -6.67 16 3 C 0.08 1.12 3.50 32.13 0.11 1.23 16 4 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 5 C -0.11 -1.61 6.25 31.92 0.20 -1.41 16 6 C 0.12 2.52 3.28 44.60 0.15 2.67 16 7 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 8 C 0.51 15.44 6.19 87.66 0.54 15.98 16 9 O -0.57 -22.49 15.60 -3.04 -0.05 -22.53 16 10 N -0.70 -20.87 5.18 -436.72 -2.26 -23.13 16 11 C 0.15 5.88 2.84 46.23 0.13 6.01 16 12 H 0.07 2.96 7.26 -2.38 -0.02 2.94 16 13 C -0.13 -5.40 6.78 32.03 0.22 -5.18 16 14 C 0.16 8.08 5.88 86.85 0.51 8.60 16 15 N -0.61 -31.44 3.13 -668.27 -2.09 -33.53 16 16 C -0.23 -12.54 9.87 84.03 0.83 -11.71 16 17 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 18 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 19 N -0.95 -56.97 10.09 21.65 0.22 -56.75 16 20 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.15 6.28 3.48 45.34 0.16 6.44 16 25 H 0.05 2.08 7.72 -2.39 -0.02 2.06 16 26 C -0.15 -5.81 9.14 71.98 0.66 -5.16 16 27 N -0.60 -12.24 2.79 -792.18 -2.21 -14.45 16 28 C 0.52 12.94 7.30 87.65 0.64 13.58 16 29 C -0.16 -2.20 10.19 71.23 0.73 -1.47 16 30 O -0.59 -21.27 16.71 -3.05 -0.05 -21.33 16 31 C 0.08 1.00 6.12 86.86 0.53 1.53 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.04 0.41 8.11 -2.39 -0.02 0.39 16 34 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.09 1.48 7.82 -2.39 -0.02 1.46 16 37 H 0.41 9.61 8.37 -92.71 -0.78 8.83 16 38 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 4.61 5.87 -2.39 -0.01 4.60 16 41 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.05 2.03 8.02 -2.39 -0.02 2.02 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.11 0.75 6.09 -2.38 -0.01 0.74 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 48 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.10 0.87 6.94 -2.38 -0.02 0.85 16 50 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -81.28 400.04 1.28 -80.00 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.16 Total: 21.48 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 7.10 Total: 29.11 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -6.34 Total: -127.86 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -1.67 Total: -50.53 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -81.28 1.28 -80.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088771907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.378 kcal (2) G-P(sol) polarization free energy of solvation -81.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds