Wall clock time and date at job start Tue Mar 31 2020 23:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.00060 * 2 1 4 4 C 1.54324 * 109.88513 * 238.89678 * 2 1 3 5 5 H 1.09004 * 110.71698 * 336.93451 * 4 2 1 6 6 N 1.46496 * 110.71812 * 100.02462 * 4 2 1 7 7 C 1.34771 * 120.00182 * 204.99821 * 6 4 2 8 8 O 1.21283 * 120.00086 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00411 * 180.02562 * 7 6 4 10 10 H 1.09000 * 110.32825 * 302.75168 * 9 7 6 11 11 C 1.54478 * 110.37430 * 64.99971 * 9 7 6 12 12 C 1.54512 * 104.06504 * 142.81128 * 11 9 7 13 13 C 1.54478 * 104.05878 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.37183 * 94.96194 * 13 12 11 15 15 C 1.50699 * 110.37077 * 217.18618 * 13 12 11 16 16 O 1.21283 * 119.99754 * 106.86867 * 15 13 12 17 17 N 1.34775 * 120.00307 * 286.87445 * 15 13 12 18 18 C 1.46505 * 119.99923 * 184.79142 * 17 15 13 19 19 C 1.46497 * 119.99681 * 4.78533 * 17 15 13 20 20 O 1.44421 * 104.90288 * 336.07551 * 13 12 11 21 21 C 1.55152 * 102.94139 * 218.39303 * 4 2 1 22 22 C 1.54912 * 101.58461 * 35.50114 * 21 4 2 23 23 N 1.47025 * 109.87973 * 121.08946 * 2 1 3 24 24 C 1.36940 * 125.64665 * 298.32373 * 23 2 1 25 25 H 1.07996 * 120.00138 * 0.02562 * 24 23 2 26 26 C 1.38813 * 119.99651 * 180.02562 * 24 23 2 27 27 N 1.31623 * 119.99974 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 119.99769 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.47171 * 59.99921 * 28 26 24 30 30 H 1.48504 * 109.46771 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.47264 * 299.99355 * 28 26 24 32 32 H 1.09000 * 109.47119 * 181.09939 * 1 2 3 33 33 H 1.08999 * 109.47002 * 301.10717 * 1 2 3 34 34 H 1.09001 * 109.46687 * 61.10045 * 1 2 3 35 35 H 0.97004 * 120.00099 * 25.01028 * 6 4 2 36 36 H 1.09004 * 110.50999 * 24.17135 * 11 9 7 37 37 H 1.08998 * 110.51060 * 261.46033 * 11 9 7 38 38 H 1.08994 * 110.50996 * 241.36156 * 12 11 9 39 39 H 1.08996 * 110.50954 * 118.64412 * 12 11 9 40 40 H 1.08995 * 109.46711 * 269.99260 * 18 17 15 41 41 H 1.09001 * 109.46729 * 150.00058 * 18 17 15 42 42 H 1.08996 * 109.47570 * 29.99552 * 18 17 15 43 43 H 1.08998 * 109.46904 * 274.24218 * 19 17 15 44 44 H 1.08990 * 109.47500 * 34.24608 * 19 17 15 45 45 H 1.09007 * 109.46943 * 154.24865 * 19 17 15 46 46 H 1.09003 * 111.00341 * 153.57773 * 21 4 2 47 47 H 1.09008 * 111.00421 * 277.42437 * 21 4 2 48 48 H 1.08995 * 110.36469 * 204.15249 * 22 21 4 49 49 H 1.08998 * 110.45629 * 81.87442 * 22 21 4 50 50 H 0.96997 * 119.99728 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0550 -0.7497 -1.2426 5 1 1.3040 -1.4438 -1.6199 6 7 2.4555 0.1958 -2.2875 7 6 2.4583 -0.1887 -3.5792 8 8 2.1288 -1.3174 -3.8766 9 6 2.8709 0.7837 -4.6540 10 1 2.2449 1.6752 -4.6187 11 6 4.3591 1.1649 -4.4918 12 6 4.8780 1.2782 -5.9428 13 6 3.6416 0.9527 -6.8099 14 1 3.1354 1.8706 -7.1087 15 6 4.0474 0.1591 -8.0251 16 8 3.7853 -1.0231 -8.0926 17 7 4.7016 0.7631 -9.0368 18 6 5.0033 0.0186 -10.2620 19 6 5.1110 2.1642 -8.9114 20 8 2.7866 0.1622 -5.9557 21 6 3.2876 -1.5143 -0.6921 22 6 2.8145 -1.8793 0.7371 23 7 2.0300 -0.7140 1.1840 24 6 1.8049 -0.3553 2.4863 25 1 1.2141 0.5204 2.7109 26 6 2.3360 -1.1175 3.5178 27 7 3.0556 -2.1851 3.2441 28 14 2.0295 -0.6279 5.2943 29 1 0.5690 -0.6286 5.5630 30 1 2.6991 -1.5980 6.1976 31 1 2.5765 0.7316 5.5345 32 1 -0.3633 -1.0275 0.0197 33 1 -0.3633 0.5309 0.8799 34 1 -0.3633 0.4967 -0.8997 35 1 2.7189 1.0986 -2.0496 36 1 4.8970 0.3842 -3.9539 37 1 4.4546 2.1205 -3.9763 38 1 5.6721 0.5536 -6.1221 39 1 5.2299 2.2899 -6.1447 40 1 5.9756 -0.4642 -10.1636 41 1 5.0225 0.7048 -11.1087 42 1 4.2365 -0.7386 -10.4252 43 1 4.2872 2.8116 -9.2119 44 1 5.3783 2.3733 -7.8757 45 1 5.9720 2.3500 -9.5536 46 1 3.4852 -2.4112 -1.2792 47 1 4.1655 -0.8689 -0.6601 48 1 3.6715 -2.0337 1.3926 49 1 2.1890 -2.7718 0.7150 50 1 3.4264 -2.7178 3.9649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088855487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:37 Heat of formation + Delta-G solvation = -71.758296 kcal Electronic energy + Delta-G solvation = -30320.804855 eV Core-core repulsion = 26156.616491 eV Total energy + Delta-G solvation = -4164.188364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.96261 -39.76734 -38.49908 -37.27600 -35.94583 -34.07592 -32.62792 -32.05152 -30.82382 -30.32977 -28.71736 -28.15095 -26.81272 -25.03087 -24.00939 -23.68755 -22.28282 -20.65311 -20.15540 -19.95963 -19.55385 -17.93774 -17.10814 -16.86819 -16.74767 -16.36273 -16.05963 -15.77551 -15.21890 -14.75127 -14.53525 -14.44169 -14.10635 -13.88645 -13.72322 -13.48090 -13.27037 -13.15068 -13.12860 -12.78950 -12.54378 -12.35722 -12.13271 -12.05147 -12.01991 -11.75465 -11.55420 -11.27800 -11.14251 -10.85141 -10.82703 -10.57478 -10.49858 -10.39092 -10.12768 -9.92190 -9.74771 -9.59815 -9.44357 -9.13419 -8.68358 -8.60338 -6.87874 -5.65467 -3.08597 2.18193 2.34311 2.73056 3.03086 3.39412 3.43863 3.45378 3.73999 3.93873 4.16723 4.36021 4.47298 4.50321 4.56507 4.64737 4.72599 4.77426 4.88193 5.00274 5.02322 5.14970 5.17649 5.29632 5.31911 5.41588 5.42184 5.46269 5.55341 5.63281 5.63606 5.83229 5.94954 6.12446 6.25286 6.26632 6.32343 6.35889 6.53914 6.61430 6.72903 6.86010 6.87570 7.12304 7.52502 7.61809 7.70667 7.80905 7.85425 8.34316 8.41340 9.20261 9.81213 10.45218 11.37658 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031019 B = 0.002055 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.459326 B =13619.845472 C =13643.177202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.712 5.712 7 C 0.516 3.484 8 O -0.515 6.515 9 C 0.055 3.945 10 H 0.099 0.901 11 C -0.143 4.143 12 C -0.142 4.142 13 C 0.056 3.944 14 H 0.097 0.903 15 C 0.517 3.483 16 O -0.506 6.506 17 N -0.624 5.624 18 C 0.087 3.913 19 C 0.068 3.932 20 O -0.313 6.313 21 C -0.153 4.153 22 C 0.152 3.848 23 N -0.595 5.595 24 C -0.221 4.221 25 H 0.077 0.923 26 C -0.011 4.011 27 N -0.921 5.921 28 Si 0.915 3.085 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.109 0.891 49 H 0.015 0.985 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 14.399 -24.183 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.112 0.888 6 N -0.365 5.365 7 C 0.300 3.700 8 O -0.389 6.389 9 C -0.006 4.006 10 H 0.116 0.884 11 C -0.181 4.181 12 C -0.180 4.180 13 C -0.006 4.006 14 H 0.114 0.886 15 C 0.304 3.696 16 O -0.379 6.379 17 N -0.361 5.361 18 C -0.055 4.055 19 C -0.075 4.075 20 O -0.230 6.230 21 C -0.193 4.193 22 C 0.027 3.973 23 N -0.320 5.320 24 C -0.349 4.349 25 H 0.095 0.905 26 C -0.206 4.206 27 N -0.569 5.569 28 Si 0.745 3.255 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.127 0.873 49 H 0.033 0.967 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.832 12.610 -24.270 27.965 hybrid contribution 0.017 0.985 0.992 1.398 sum 5.849 13.595 -23.279 27.585 Atomic orbital electron populations 1.22245 0.97876 1.01513 0.99883 1.20992 0.92599 0.94739 0.86906 0.94660 1.22183 0.97747 0.90768 0.86159 0.88757 1.45941 1.68591 1.16335 1.05601 1.19971 0.78521 0.88416 0.83137 1.90763 1.46101 1.20146 1.81928 1.22963 0.97463 0.95399 0.84801 0.88390 1.22941 0.94137 1.03873 0.97187 1.22974 0.97608 1.03257 0.94162 1.22892 0.92440 0.94220 0.91046 0.88590 1.20244 0.77953 0.87822 0.83623 1.90781 1.53014 1.15241 1.78887 1.47638 1.58646 1.13067 1.16757 1.21654 1.01762 0.97021 0.85065 1.22024 1.00707 0.81161 1.03567 1.89447 1.65048 1.51008 1.17450 1.23400 0.96706 0.99378 0.99789 1.21953 0.97403 0.88410 0.89504 1.44485 1.59266 1.28235 1.00042 1.18967 1.27219 1.08187 0.80518 0.90515 1.24799 1.00391 0.97389 0.98056 1.69787 1.39032 1.17781 1.30290 0.86158 0.77646 0.77382 0.84309 1.21241 1.21602 1.21205 0.92889 0.92722 0.94323 0.76857 0.89322 0.88774 0.89777 0.88913 0.92584 0.91039 0.90473 0.92252 0.90536 0.90461 0.91988 0.91975 0.87311 0.96716 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.13 37.16 0.34 -2.56 16 2 C 0.16 3.09 3.48 -66.95 -0.23 2.85 16 3 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 4 C 0.14 2.49 2.85 -66.10 -0.19 2.30 16 5 H 0.09 1.91 7.25 -51.93 -0.38 1.53 16 6 N -0.71 -10.24 5.16 -52.03 -0.27 -10.51 16 7 C 0.52 8.07 7.08 -10.99 -0.08 8.00 16 8 O -0.52 -10.83 16.20 -13.62 -0.22 -11.05 16 9 C 0.06 0.63 3.71 -27.11 -0.10 0.53 16 10 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.14 -1.17 6.61 -25.16 -0.17 -1.33 16 12 C -0.14 -0.98 5.52 -25.16 -0.14 -1.12 16 13 C 0.06 0.54 2.86 -27.11 -0.08 0.46 16 14 H 0.10 0.62 7.89 -51.93 -0.41 0.21 16 15 C 0.52 6.06 6.93 -10.99 -0.08 5.99 16 16 O -0.51 -8.66 16.20 -13.49 -0.22 -8.87 16 17 N -0.62 -4.76 3.27 -189.52 -0.62 -5.38 16 18 C 0.09 0.56 10.38 59.85 0.62 1.19 16 19 C 0.07 0.22 9.95 59.85 0.60 0.82 16 20 O -0.31 -4.58 10.20 -64.15 -0.65 -5.23 16 21 C -0.15 -3.05 6.77 -24.58 -0.17 -3.22 16 22 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 23 N -0.60 -14.70 3.13 -162.57 -0.51 -15.21 16 24 C -0.22 -5.94 9.89 -15.06 -0.15 -6.09 16 25 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 26 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 27 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 28 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 4.43 8.37 -40.82 -0.34 4.08 16 36 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.67 7.87 -51.93 -0.41 0.27 16 39 H 0.09 0.29 6.60 -51.93 -0.34 -0.05 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 42 H 0.08 0.65 7.49 -51.93 -0.39 0.26 16 43 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.08 0.18 4.63 -51.93 -0.24 -0.06 16 45 H 0.08 0.13 8.04 -51.92 -0.42 -0.29 16 46 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 48 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 49 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -37.95 396.78 -9.13 -47.08 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.23 Total: 1.35 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 0.07 Total: 11.12 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.84 Total: -57.12 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.09 Total: -25.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.95 -9.13 -47.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088855487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.677 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds