Wall clock time and date at job start Tue Mar 31 2020 23:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.00060 * 2 1 4 4 C 1.54324 * 109.88513 * 238.89678 * 2 1 3 5 5 H 1.09004 * 110.71698 * 336.93451 * 4 2 1 6 6 N 1.46496 * 110.71812 * 100.02462 * 4 2 1 7 7 C 1.34771 * 120.00182 * 204.99821 * 6 4 2 8 8 O 1.21283 * 120.00086 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00411 * 180.02562 * 7 6 4 10 10 H 1.09000 * 110.32825 * 302.75168 * 9 7 6 11 11 C 1.54478 * 110.37430 * 64.99971 * 9 7 6 12 12 C 1.54512 * 104.06504 * 142.81128 * 11 9 7 13 13 C 1.54478 * 104.05878 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.37183 * 94.96194 * 13 12 11 15 15 C 1.50699 * 110.37077 * 217.18618 * 13 12 11 16 16 O 1.21283 * 119.99754 * 106.86867 * 15 13 12 17 17 N 1.34775 * 120.00307 * 286.87445 * 15 13 12 18 18 C 1.46505 * 119.99923 * 184.79142 * 17 15 13 19 19 C 1.46497 * 119.99681 * 4.78533 * 17 15 13 20 20 O 1.44421 * 104.90288 * 336.07551 * 13 12 11 21 21 C 1.55152 * 102.94139 * 218.39303 * 4 2 1 22 22 C 1.54912 * 101.58461 * 35.50114 * 21 4 2 23 23 N 1.47025 * 109.87973 * 121.08946 * 2 1 3 24 24 C 1.36940 * 125.64665 * 298.32373 * 23 2 1 25 25 H 1.07996 * 120.00138 * 0.02562 * 24 23 2 26 26 C 1.38813 * 119.99651 * 180.02562 * 24 23 2 27 27 N 1.31623 * 119.99974 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 119.99769 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.47171 * 59.99921 * 28 26 24 30 30 H 1.48504 * 109.46771 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.47264 * 299.99355 * 28 26 24 32 32 H 1.09000 * 109.47119 * 181.09939 * 1 2 3 33 33 H 1.08999 * 109.47002 * 301.10717 * 1 2 3 34 34 H 1.09001 * 109.46687 * 61.10045 * 1 2 3 35 35 H 0.97004 * 120.00099 * 25.01028 * 6 4 2 36 36 H 1.09004 * 110.50999 * 24.17135 * 11 9 7 37 37 H 1.08998 * 110.51060 * 261.46033 * 11 9 7 38 38 H 1.08994 * 110.50996 * 241.36156 * 12 11 9 39 39 H 1.08996 * 110.50954 * 118.64412 * 12 11 9 40 40 H 1.08995 * 109.46711 * 269.99260 * 18 17 15 41 41 H 1.09001 * 109.46729 * 150.00058 * 18 17 15 42 42 H 1.08996 * 109.47570 * 29.99552 * 18 17 15 43 43 H 1.08998 * 109.46904 * 274.24218 * 19 17 15 44 44 H 1.08990 * 109.47500 * 34.24608 * 19 17 15 45 45 H 1.09007 * 109.46943 * 154.24865 * 19 17 15 46 46 H 1.09003 * 111.00341 * 153.57773 * 21 4 2 47 47 H 1.09008 * 111.00421 * 277.42437 * 21 4 2 48 48 H 1.08995 * 110.36469 * 204.15249 * 22 21 4 49 49 H 1.08998 * 110.45629 * 81.87442 * 22 21 4 50 50 H 0.96997 * 119.99728 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0550 -0.7497 -1.2426 5 1 1.3040 -1.4438 -1.6199 6 7 2.4555 0.1958 -2.2875 7 6 2.4583 -0.1887 -3.5792 8 8 2.1288 -1.3174 -3.8766 9 6 2.8709 0.7837 -4.6540 10 1 2.2449 1.6752 -4.6187 11 6 4.3591 1.1649 -4.4918 12 6 4.8780 1.2782 -5.9428 13 6 3.6416 0.9527 -6.8099 14 1 3.1354 1.8706 -7.1087 15 6 4.0474 0.1591 -8.0251 16 8 3.7853 -1.0231 -8.0926 17 7 4.7016 0.7631 -9.0368 18 6 5.0033 0.0186 -10.2620 19 6 5.1110 2.1642 -8.9114 20 8 2.7866 0.1622 -5.9557 21 6 3.2876 -1.5143 -0.6921 22 6 2.8145 -1.8793 0.7371 23 7 2.0300 -0.7140 1.1840 24 6 1.8049 -0.3553 2.4863 25 1 1.2141 0.5204 2.7109 26 6 2.3360 -1.1175 3.5178 27 7 3.0556 -2.1851 3.2441 28 14 2.0295 -0.6279 5.2943 29 1 0.5690 -0.6286 5.5630 30 1 2.6991 -1.5980 6.1976 31 1 2.5765 0.7316 5.5345 32 1 -0.3633 -1.0275 0.0197 33 1 -0.3633 0.5309 0.8799 34 1 -0.3633 0.4967 -0.8997 35 1 2.7189 1.0986 -2.0496 36 1 4.8970 0.3842 -3.9539 37 1 4.4546 2.1205 -3.9763 38 1 5.6721 0.5536 -6.1221 39 1 5.2299 2.2899 -6.1447 40 1 5.9756 -0.4642 -10.1636 41 1 5.0225 0.7048 -11.1087 42 1 4.2365 -0.7386 -10.4252 43 1 4.2872 2.8116 -9.2119 44 1 5.3783 2.3733 -7.8757 45 1 5.9720 2.3500 -9.5536 46 1 3.4852 -2.4112 -1.2792 47 1 4.1655 -0.8689 -0.6601 48 1 3.6715 -2.0337 1.3926 49 1 2.1890 -2.7718 0.7150 50 1 3.4264 -2.7178 3.9649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088855487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:36 Heat of formation + Delta-G solvation = -99.747287 kcal Electronic energy + Delta-G solvation = -30322.018549 eV Core-core repulsion = 26156.616491 eV Total energy + Delta-G solvation = -4165.402058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81454 -40.90852 -39.66654 -38.71676 -36.67069 -35.65375 -33.99793 -33.18934 -32.10497 -31.68336 -30.32049 -28.73777 -27.54423 -26.41784 -25.82531 -24.69722 -22.94521 -22.21447 -21.58886 -21.24343 -20.57776 -18.80789 -18.68043 -17.92726 -17.76375 -17.30421 -17.16835 -16.76494 -16.45960 -16.01242 -15.80635 -15.67875 -15.42143 -15.09994 -14.79521 -14.50147 -14.36785 -14.20138 -13.99795 -13.74327 -13.56229 -13.45666 -13.25206 -13.23534 -12.99754 -12.94272 -12.72264 -12.68434 -12.58986 -12.39406 -12.25692 -12.10319 -12.02212 -11.84152 -11.56633 -11.45092 -11.36667 -10.82216 -10.71482 -10.63047 -10.05550 -9.72880 -8.89265 -7.73159 -5.18557 1.39403 1.49268 1.52512 1.54482 1.58451 1.63126 2.04971 2.52910 2.99614 3.25712 3.36976 3.44446 3.62013 3.78164 3.83013 3.86495 3.93394 3.98130 4.03274 4.19845 4.24595 4.36712 4.40833 4.48403 4.49802 4.53984 4.62863 4.67078 4.76176 4.80413 4.83349 4.89285 4.93234 4.94803 5.01518 5.03843 5.04320 5.12648 5.35355 5.41316 5.50778 5.57581 5.59923 5.65161 5.80426 6.25561 6.31116 6.55948 7.06599 7.11845 7.24195 7.80029 8.43934 9.28673 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031019 B = 0.002055 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.459326 B =13619.845472 C =13643.177202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.153 3.847 3 H 0.062 0.938 4 C 0.151 3.849 5 H 0.072 0.928 6 N -0.693 5.693 7 C 0.512 3.488 8 O -0.579 6.579 9 C 0.058 3.942 10 H 0.144 0.856 11 C -0.139 4.139 12 C -0.133 4.133 13 C 0.052 3.948 14 H 0.138 0.862 15 C 0.504 3.496 16 O -0.583 6.583 17 N -0.616 5.616 18 C 0.082 3.918 19 C 0.058 3.942 20 O -0.367 6.367 21 C -0.138 4.138 22 C 0.157 3.843 23 N -0.613 5.613 24 C -0.225 4.225 25 H 0.088 0.912 26 C -0.072 4.072 27 N -0.953 5.953 28 Si 0.980 3.020 29 H -0.281 1.281 30 H -0.299 1.299 31 H -0.272 1.272 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.419 0.581 36 H 0.063 0.937 37 H 0.141 0.859 38 H 0.065 0.935 39 H 0.145 0.855 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.079 0.921 49 H -0.020 1.020 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 19.626 -25.335 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.080 0.920 4 C 0.045 3.955 5 H 0.090 0.910 6 N -0.347 5.347 7 C 0.298 3.702 8 O -0.458 6.458 9 C -0.002 4.002 10 H 0.161 0.839 11 C -0.177 4.177 12 C -0.170 4.170 13 C -0.008 4.008 14 H 0.155 0.845 15 C 0.292 3.708 16 O -0.462 6.462 17 N -0.350 5.350 18 C -0.061 4.061 19 C -0.083 4.083 20 O -0.286 6.286 21 C -0.178 4.178 22 C 0.032 3.968 23 N -0.338 5.338 24 C -0.354 4.354 25 H 0.106 0.894 26 C -0.264 4.264 27 N -0.603 5.603 28 Si 0.808 3.192 29 H -0.207 1.207 30 H -0.226 1.226 31 H -0.198 1.198 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.084 0.916 39 H 0.163 0.837 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.097 0.903 49 H -0.002 1.002 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.565 17.974 -25.465 31.853 hybrid contribution -0.195 -0.615 1.228 1.387 sum 6.370 17.359 -24.237 30.485 Atomic orbital electron populations 1.22146 0.96745 1.00513 1.01351 1.21198 0.93348 0.95344 0.85440 0.92040 1.21710 0.96127 0.90971 0.86676 0.91005 1.45642 1.67925 1.16536 1.04567 1.20944 0.76836 0.88406 0.83983 1.90743 1.48923 1.23233 1.82889 1.23178 1.00345 0.94536 0.82169 0.83929 1.23034 0.91235 1.05244 0.98166 1.23037 0.95763 1.05645 0.92592 1.23241 0.93441 0.94282 0.89874 0.84492 1.20917 0.77665 0.87261 0.84985 1.90742 1.56436 1.18414 1.80578 1.47819 1.56714 1.14765 1.15712 1.21772 1.00761 0.97506 0.86018 1.22396 1.02274 0.78349 1.05261 1.89411 1.66513 1.53423 1.19218 1.23192 0.97939 0.99821 0.96850 1.21660 0.95766 0.87784 0.91624 1.44721 1.59693 1.28465 1.00936 1.19374 1.26296 1.08100 0.81614 0.89400 1.25651 1.00942 0.97755 1.02066 1.70045 1.40434 1.18994 1.30778 0.85125 0.77423 0.77193 0.79416 1.20744 1.22585 1.19793 0.95104 0.93055 0.91013 0.74281 0.91829 0.84081 0.91625 0.83710 0.92418 0.87407 0.93321 0.90350 0.89016 0.88355 0.92487 0.90417 0.90264 1.00220 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.13 71.98 0.66 -4.65 16 2 C 0.15 5.86 3.48 45.34 0.16 6.02 16 3 H 0.06 2.09 7.72 -2.39 -0.02 2.07 16 4 C 0.15 5.47 2.85 46.18 0.13 5.60 16 5 H 0.07 2.98 7.25 -2.38 -0.02 2.96 16 6 N -0.69 -18.44 5.16 -436.93 -2.25 -20.69 16 7 C 0.51 15.51 7.08 87.66 0.62 16.13 16 8 O -0.58 -25.20 16.20 15.30 0.25 -24.95 16 9 C 0.06 1.16 3.71 30.35 0.11 1.27 16 10 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 11 C -0.14 -1.70 6.61 31.61 0.21 -1.50 16 12 C -0.13 -1.31 5.52 31.61 0.17 -1.14 16 13 C 0.05 0.87 2.86 30.35 0.09 0.96 16 14 H 0.14 1.10 7.89 -2.39 -0.02 1.08 16 15 C 0.50 11.65 6.93 87.66 0.61 12.26 16 16 O -0.58 -21.35 16.20 15.18 0.25 -21.10 16 17 N -0.62 -8.26 3.27 -871.90 -2.85 -11.11 16 18 C 0.08 1.00 10.38 127.77 1.33 2.32 16 19 C 0.06 0.12 9.95 127.77 1.27 1.39 16 20 O -0.37 -10.49 10.20 -121.33 -1.24 -11.72 16 21 C -0.14 -5.61 6.77 31.99 0.22 -5.39 16 22 C 0.16 8.01 5.89 86.86 0.51 8.52 16 23 N -0.61 -30.45 3.13 -668.26 -2.09 -32.54 16 24 C -0.23 -12.09 9.89 84.03 0.83 -11.26 16 25 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 26 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 27 N -0.95 -56.94 10.09 21.65 0.22 -56.72 16 28 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 30 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 31 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 7.59 8.37 -92.71 -0.78 6.81 16 36 H 0.06 1.12 7.87 -2.38 -0.02 1.11 16 37 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 39 H 0.15 -0.09 6.60 -2.39 -0.02 -0.10 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.50 8.07 -2.39 -0.02 0.48 16 42 H 0.05 0.88 7.49 -2.39 -0.02 0.86 16 43 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.09 -0.08 4.63 -2.39 -0.01 -0.09 16 45 H 0.10 -0.15 8.04 -2.38 -0.02 -0.17 16 46 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 48 H 0.08 4.53 5.87 -2.39 -0.01 4.52 16 49 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -92.90 396.78 1.85 -91.04 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.17 Total: 13.76 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 7.38 Total: 26.98 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -6.98 Total: -121.07 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.74 Total: -57.77 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -92.90 1.85 -91.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088855487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.703 kcal (2) G-P(sol) polarization free energy of solvation -92.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds