Wall clock time and date at job start Tue Mar 31 2020 23:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21289 * 120.00063 * 2 1 4 4 N 1.34768 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.47159 * 120.98287 * 359.97438 * 4 2 1 6 6 C 1.53286 * 108.38713 * 129.48212 * 5 4 2 7 7 O 1.42970 * 109.22232 * 52.30248 * 6 5 4 8 8 C 1.42954 * 114.16754 * 297.41779 * 7 6 5 9 9 H 1.09002 * 109.55995 * 302.63104 * 8 7 6 10 10 C 1.50700 * 109.51332 * 182.50276 * 8 7 6 11 11 O 1.21279 * 120.00113 * 355.25679 * 10 8 7 12 12 N 1.34784 * 119.99961 * 175.25447 * 10 8 7 13 13 C 1.46494 * 119.99635 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47001 * 180.02562 * 13 12 10 15 15 H 1.08996 * 110.64669 * 56.68313 * 14 13 12 16 16 C 1.54326 * 110.71553 * 293.54514 * 14 13 12 17 17 N 1.47027 * 107.27072 * 219.44141 * 16 14 13 18 18 C 1.36939 * 125.64819 * 178.97423 * 17 16 14 19 19 H 1.07995 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99716 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00498 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99920 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46911 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47028 * 120.00191 * 22 20 18 25 25 H 1.48496 * 109.46946 * 240.00334 * 22 20 18 26 26 C 1.47420 * 108.70134 * 358.94572 * 17 16 14 27 27 C 1.54903 * 104.83553 * 24.12253 * 26 17 16 28 28 H 1.08999 * 111.00267 * 81.06886 * 27 26 17 29 29 C 1.53004 * 111.00705 * 204.91804 * 27 26 17 30 30 C 1.47149 * 120.98458 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47614 * 240.00457 * 1 2 3 32 32 H 1.09004 * 109.47138 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.47032 * 119.99959 * 1 2 3 34 34 H 1.08999 * 109.67751 * 249.20774 * 5 4 2 35 35 H 1.09001 * 109.67821 * 9.75845 * 5 4 2 36 36 H 1.09004 * 109.51782 * 172.22461 * 6 5 4 37 37 H 1.09006 * 109.51649 * 292.37885 * 6 5 4 38 38 H 0.96995 * 120.00015 * 359.72695 * 12 10 8 39 39 H 1.09005 * 109.47306 * 299.99972 * 13 12 10 40 40 H 1.09002 * 109.47518 * 60.00210 * 13 12 10 41 41 H 1.08997 * 109.88850 * 338.86012 * 16 14 13 42 42 H 1.09000 * 109.88298 * 99.87249 * 16 14 13 43 43 H 0.96993 * 120.00186 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36810 * 142.96796 * 26 17 16 45 45 H 1.09009 * 110.36744 * 265.28513 * 26 17 16 46 46 H 1.08997 * 109.47109 * 172.19790 * 29 27 26 47 47 H 1.08995 * 109.47006 * 292.19636 * 29 27 26 48 48 H 1.08997 * 109.46958 * 52.19653 * 29 27 26 49 49 H 1.09001 * 109.68375 * 110.78840 * 30 4 2 50 50 H 1.08999 * 109.68099 * 350.23755 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4671 -2.4540 0.0017 6 6 2.0409 -3.3262 -1.1207 7 8 3.4630 -3.3889 -0.9877 8 6 4.1196 -2.1261 -1.1220 9 1 3.8715 -1.6867 -2.0881 10 6 5.6108 -2.3214 -1.0259 11 8 6.0638 -3.4177 -0.7733 12 7 6.4411 -1.2777 -1.2208 13 6 7.8907 -1.4678 -1.1279 14 6 8.5974 -0.1360 -1.3886 15 1 8.2485 0.6269 -0.6926 16 6 8.3849 0.3183 -2.8481 17 7 9.6538 0.8962 -3.3145 18 6 9.8894 1.3990 -4.5663 19 1 9.1043 1.3915 -5.3078 20 6 11.1374 1.9182 -4.8820 21 7 12.0945 1.9269 -3.9784 22 14 11.4586 2.6048 -6.5894 23 1 10.2291 2.4795 -7.4126 24 1 11.8394 4.0362 -6.4837 25 1 12.5626 1.8448 -7.2287 26 6 10.6302 0.8454 -2.2112 27 6 10.1370 -0.3044 -1.2978 28 1 10.4477 -1.2737 -1.6877 29 6 10.6260 -0.1116 0.1391 30 6 3.6521 -1.1923 0.0011 31 1 -0.3634 -0.5137 0.8900 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3633 -0.5138 -0.8899 34 1 1.6080 -2.9510 0.9614 35 1 0.4044 -2.2845 -0.1720 36 1 1.6241 -4.3309 -1.0504 37 1 1.7844 -2.8917 -2.0869 38 1 6.0790 -0.4018 -1.4267 39 1 8.1471 -1.8257 -0.1308 40 1 8.2095 -2.1999 -1.8699 41 1 8.1175 -0.5376 -3.4676 42 1 7.5951 1.0683 -2.8916 43 1 12.9666 2.2894 -4.1992 44 1 11.6258 0.6242 -2.5956 45 1 10.6346 1.7886 -1.6647 46 1 10.1547 -0.8518 0.7857 47 1 11.7084 -0.2351 0.1742 48 1 10.3633 0.8894 0.4811 49 1 4.0126 -1.5626 0.9608 50 1 4.0366 -0.1874 -0.1730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093170449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:20 Heat of formation + Delta-G solvation = -85.297161 kcal Electronic energy + Delta-G solvation = -30299.253311 eV Core-core repulsion = 26134.477857 eV Total energy + Delta-G solvation = -4164.775454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98939 -39.69485 -38.51997 -37.81057 -35.28113 -34.66718 -33.10006 -32.41576 -30.74898 -30.38567 -29.47294 -27.95644 -26.01667 -25.33371 -24.74355 -23.28942 -22.51936 -20.73633 -19.86157 -19.77210 -19.29909 -17.89412 -17.26457 -17.19053 -16.73620 -16.57226 -16.03910 -15.67733 -15.46844 -15.24007 -14.79193 -14.61321 -14.12672 -14.02645 -13.99896 -13.69702 -13.35271 -13.15996 -13.00477 -12.73455 -12.65736 -12.62463 -12.43614 -12.05912 -11.91156 -11.55824 -11.42927 -11.35590 -11.13751 -10.86998 -10.81123 -10.70417 -10.32766 -10.22434 -10.02489 -9.93921 -9.87743 -9.72120 -9.38613 -9.10262 -9.00891 -8.65336 -6.83040 -5.65202 -3.07030 2.13415 2.26237 2.57243 2.62395 3.39893 3.45333 3.47835 3.66808 4.04994 4.14916 4.33886 4.46336 4.49273 4.50476 4.67018 4.69817 4.72336 4.86802 5.01795 5.08626 5.10968 5.19540 5.24240 5.30272 5.34649 5.39769 5.49770 5.58131 5.75676 5.78891 5.87353 6.06027 6.10266 6.20171 6.26258 6.37807 6.51867 6.56239 6.60348 6.62828 6.79570 6.81810 6.94898 7.44059 7.54155 7.63716 7.66342 7.86781 8.13113 8.36751 9.22404 9.83181 10.47906 11.38578 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.002424 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.542191 B =11549.237455 C =12242.474795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.537 6.537 4 N -0.619 5.619 5 C 0.070 3.930 6 C 0.045 3.955 7 O -0.348 6.348 8 C 0.061 3.939 9 H 0.090 0.910 10 C 0.521 3.479 11 O -0.518 6.518 12 N -0.720 5.720 13 C 0.134 3.866 14 C -0.111 4.111 15 H 0.078 0.922 16 C 0.140 3.860 17 N -0.605 5.605 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.159 3.841 27 C -0.110 4.110 28 H 0.072 0.928 29 C -0.135 4.135 30 C 0.089 3.911 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.403 0.597 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.018 0.982 43 H 0.251 0.749 44 H 0.107 0.893 45 H 0.013 0.987 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.600 -9.075 10.607 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.303 3.697 3 O -0.413 6.413 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.304 3.696 11 O -0.392 6.392 12 N -0.372 5.372 13 C 0.011 3.989 14 C -0.130 4.130 15 H 0.096 0.904 16 C 0.014 3.986 17 N -0.330 5.330 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.034 3.966 27 C -0.130 4.130 28 H 0.090 0.910 29 C -0.192 4.192 30 C -0.035 4.035 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.237 0.763 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.124 0.876 45 H 0.031 0.969 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.687 -9.369 10.694 26.773 hybrid contribution -0.306 0.991 -1.033 1.464 sum -22.993 -8.378 9.661 26.309 Atomic orbital electron populations 1.21945 0.91264 1.05835 1.04189 1.20910 0.90798 0.82706 0.75327 1.90767 1.70660 1.30753 1.49151 1.48188 1.06451 1.06329 1.74502 1.22546 0.97575 0.84193 1.00972 1.23085 0.81410 1.01471 0.97306 1.88129 1.18250 1.26990 1.93154 1.22317 0.91773 0.86292 0.99709 0.89187 1.19796 0.87056 0.84947 0.77798 1.90737 1.77442 1.24526 1.46546 1.46015 1.07584 1.11790 1.71855 1.21497 0.77343 0.98124 1.01897 1.22510 0.96921 0.95149 0.98422 0.90372 1.21334 0.90328 0.95587 0.91327 1.44491 1.07203 1.71120 1.10212 1.19115 0.96619 1.31923 0.87334 0.90507 1.24789 0.96180 1.01533 0.98214 1.69805 1.03422 1.51519 1.32295 0.86002 0.77769 0.78365 0.83396 1.20557 1.21765 1.21732 1.21994 0.96601 0.91881 0.86122 1.22600 0.92458 1.01795 0.96196 0.90992 1.21654 1.00937 1.00882 0.95768 1.22180 0.80354 1.01744 0.99182 0.89224 0.88666 0.89229 0.89927 0.88247 0.86806 0.92203 0.76284 0.91376 0.91069 0.95826 0.96388 0.93775 0.87571 0.96882 0.93643 0.92647 0.92933 0.89830 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 8.69 36.00 0.31 -0.45 16 2 C 0.51 4.62 7.82 -10.99 -0.09 4.53 16 3 O -0.54 -7.33 16.55 5.55 0.09 -7.24 16 4 N -0.62 -4.91 3.02 -172.24 -0.52 -5.43 16 5 C 0.07 0.33 6.54 -3.53 -0.02 0.31 16 6 C 0.05 0.27 6.98 37.31 0.26 0.53 16 7 O -0.35 -3.82 9.92 -55.07 -0.55 -4.37 16 8 C 0.06 0.65 3.19 -27.70 -0.09 0.56 16 9 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 10 C 0.52 7.12 7.18 -10.98 -0.08 7.04 16 11 O -0.52 -9.19 16.51 -14.28 -0.24 -9.42 16 12 N -0.72 -9.18 5.36 -60.29 -0.32 -9.50 16 13 C 0.13 1.96 4.99 -4.04 -0.02 1.94 16 14 C -0.11 -1.83 2.48 -88.78 -0.22 -2.05 16 15 H 0.08 1.22 8.04 -51.93 -0.42 0.81 16 16 C 0.14 2.84 6.52 -3.06 -0.02 2.82 16 17 N -0.60 -15.40 3.39 -170.08 -0.58 -15.98 16 18 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 22 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 C 0.16 3.80 5.36 -2.53 -0.01 3.79 16 27 C -0.11 -2.02 3.09 -88.47 -0.27 -2.30 16 28 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 29 C -0.13 -2.07 9.31 37.16 0.35 -1.72 16 30 C 0.09 0.85 5.89 -3.50 -0.02 0.83 16 31 H 0.09 0.22 8.01 -51.93 -0.42 -0.20 16 32 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.09 0.21 7.66 -51.93 -0.40 -0.18 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.17 6.05 -51.93 -0.31 -0.15 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 4.45 8.32 -40.82 -0.34 4.11 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.15 8.06 -51.93 -0.42 0.74 16 41 H 0.02 0.49 7.77 -51.93 -0.40 0.08 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 44 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 45 H 0.01 0.34 7.98 -51.92 -0.41 -0.08 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.11 1.11 7.08 -51.93 -0.37 0.75 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -36.45 398.04 -9.16 -45.61 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.40 Total: 0.44 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.18 Total: 9.07 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.86 Total: -57.24 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.69 Total: -21.03 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.45 -9.16 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093170449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.692 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds