Wall clock time and date at job start Tue Mar 31 2020 23:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21289 * 120.00063 * 2 1 4 4 N 1.34768 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.47159 * 120.98287 * 359.97438 * 4 2 1 6 6 C 1.53286 * 108.38713 * 129.48212 * 5 4 2 7 7 O 1.42970 * 109.22232 * 52.30248 * 6 5 4 8 8 C 1.42954 * 114.16754 * 297.41779 * 7 6 5 9 9 H 1.09002 * 109.55995 * 302.63104 * 8 7 6 10 10 C 1.50700 * 109.51332 * 182.50276 * 8 7 6 11 11 O 1.21279 * 120.00113 * 355.25679 * 10 8 7 12 12 N 1.34784 * 119.99961 * 175.25447 * 10 8 7 13 13 C 1.46494 * 119.99635 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47001 * 180.02562 * 13 12 10 15 15 H 1.08996 * 110.64669 * 56.68313 * 14 13 12 16 16 C 1.54326 * 110.71553 * 293.54514 * 14 13 12 17 17 N 1.47027 * 107.27072 * 219.44141 * 16 14 13 18 18 C 1.36939 * 125.64819 * 178.97423 * 17 16 14 19 19 H 1.07995 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99716 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00498 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99920 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46911 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47028 * 120.00191 * 22 20 18 25 25 H 1.48496 * 109.46946 * 240.00334 * 22 20 18 26 26 C 1.47420 * 108.70134 * 358.94572 * 17 16 14 27 27 C 1.54903 * 104.83553 * 24.12253 * 26 17 16 28 28 H 1.08999 * 111.00267 * 81.06886 * 27 26 17 29 29 C 1.53004 * 111.00705 * 204.91804 * 27 26 17 30 30 C 1.47149 * 120.98458 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47614 * 240.00457 * 1 2 3 32 32 H 1.09004 * 109.47138 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.47032 * 119.99959 * 1 2 3 34 34 H 1.08999 * 109.67751 * 249.20774 * 5 4 2 35 35 H 1.09001 * 109.67821 * 9.75845 * 5 4 2 36 36 H 1.09004 * 109.51782 * 172.22461 * 6 5 4 37 37 H 1.09006 * 109.51649 * 292.37885 * 6 5 4 38 38 H 0.96995 * 120.00015 * 359.72695 * 12 10 8 39 39 H 1.09005 * 109.47306 * 299.99972 * 13 12 10 40 40 H 1.09002 * 109.47518 * 60.00210 * 13 12 10 41 41 H 1.08997 * 109.88850 * 338.86012 * 16 14 13 42 42 H 1.09000 * 109.88298 * 99.87249 * 16 14 13 43 43 H 0.96993 * 120.00186 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36810 * 142.96796 * 26 17 16 45 45 H 1.09009 * 110.36744 * 265.28513 * 26 17 16 46 46 H 1.08997 * 109.47109 * 172.19790 * 29 27 26 47 47 H 1.08995 * 109.47006 * 292.19636 * 29 27 26 48 48 H 1.08997 * 109.46958 * 52.19653 * 29 27 26 49 49 H 1.09001 * 109.68375 * 110.78840 * 30 4 2 50 50 H 1.08999 * 109.68099 * 350.23755 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4671 -2.4540 0.0017 6 6 2.0409 -3.3262 -1.1207 7 8 3.4630 -3.3889 -0.9877 8 6 4.1196 -2.1261 -1.1220 9 1 3.8715 -1.6867 -2.0881 10 6 5.6108 -2.3214 -1.0259 11 8 6.0638 -3.4177 -0.7733 12 7 6.4411 -1.2777 -1.2208 13 6 7.8907 -1.4678 -1.1279 14 6 8.5974 -0.1360 -1.3886 15 1 8.2485 0.6269 -0.6926 16 6 8.3849 0.3183 -2.8481 17 7 9.6538 0.8962 -3.3145 18 6 9.8894 1.3990 -4.5663 19 1 9.1043 1.3915 -5.3078 20 6 11.1374 1.9182 -4.8820 21 7 12.0945 1.9269 -3.9784 22 14 11.4586 2.6048 -6.5894 23 1 10.2291 2.4795 -7.4126 24 1 11.8394 4.0362 -6.4837 25 1 12.5626 1.8448 -7.2287 26 6 10.6302 0.8454 -2.2112 27 6 10.1370 -0.3044 -1.2978 28 1 10.4477 -1.2737 -1.6877 29 6 10.6260 -0.1116 0.1391 30 6 3.6521 -1.1923 0.0011 31 1 -0.3634 -0.5137 0.8900 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3633 -0.5138 -0.8899 34 1 1.6080 -2.9510 0.9614 35 1 0.4044 -2.2845 -0.1720 36 1 1.6241 -4.3309 -1.0504 37 1 1.7844 -2.8917 -2.0869 38 1 6.0790 -0.4018 -1.4267 39 1 8.1471 -1.8257 -0.1308 40 1 8.2095 -2.1999 -1.8699 41 1 8.1175 -0.5376 -3.4676 42 1 7.5951 1.0683 -2.8916 43 1 12.9666 2.2894 -4.1992 44 1 11.6258 0.6242 -2.5956 45 1 10.6346 1.7886 -1.6647 46 1 10.1547 -0.8518 0.7857 47 1 11.7084 -0.2351 0.1742 48 1 10.3633 0.8894 0.4811 49 1 4.0126 -1.5626 0.9608 50 1 4.0366 -0.1874 -0.1730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093170449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:19 Heat of formation + Delta-G solvation = -111.483249 kcal Electronic energy + Delta-G solvation = -30300.388825 eV Core-core repulsion = 26134.477857 eV Total energy + Delta-G solvation = -4165.910968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75874 -40.69612 -39.70807 -38.98635 -36.21083 -35.84451 -34.75887 -33.23338 -32.56820 -30.95200 -30.68174 -28.79450 -27.80128 -26.66200 -25.67236 -24.50638 -23.55859 -21.94615 -21.44262 -20.78405 -20.36078 -18.96988 -18.60260 -18.05980 -17.92012 -17.37569 -16.98949 -16.67139 -16.49609 -16.38490 -16.08352 -15.72868 -15.47999 -15.35876 -14.81291 -14.69560 -14.57078 -14.32879 -14.02156 -13.89474 -13.62887 -13.53648 -13.40865 -13.07496 -13.04556 -12.91793 -12.77838 -12.69173 -12.66875 -12.47868 -11.96546 -11.94045 -11.84419 -11.63835 -11.44028 -11.40921 -11.25874 -11.02897 -10.79967 -10.74517 -10.19885 -9.74696 -8.88761 -7.78141 -5.22685 1.33305 1.45311 1.46134 1.54056 1.56427 1.69960 1.83010 2.48186 2.90365 3.30932 3.40843 3.52583 3.61253 3.64044 3.76240 3.82751 3.87857 3.95334 3.97312 4.17621 4.27364 4.31432 4.36392 4.47424 4.48931 4.54155 4.61030 4.65300 4.73338 4.74544 4.76992 4.84045 4.87760 4.95884 5.08814 5.09280 5.14477 5.21405 5.30046 5.38099 5.39318 5.49707 5.71867 5.83936 5.90797 6.26020 6.31321 6.40337 7.03623 7.06512 7.10626 7.78111 8.41670 9.23547 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.002424 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.542191 B =11549.237455 C =12242.474795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.506 3.494 3 O -0.595 6.595 4 N -0.617 5.617 5 C 0.070 3.930 6 C 0.037 3.963 7 O -0.378 6.378 8 C 0.073 3.927 9 H 0.102 0.898 10 C 0.521 3.479 11 O -0.561 6.561 12 N -0.711 5.711 13 C 0.146 3.854 14 C -0.090 4.090 15 H 0.094 0.906 16 C 0.137 3.863 17 N -0.629 5.629 18 C -0.238 4.238 19 H 0.079 0.921 20 C -0.068 4.068 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.162 3.838 27 C -0.100 4.100 28 H 0.067 0.933 29 C -0.128 4.128 30 C 0.092 3.908 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.412 0.588 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.026 0.974 43 H 0.247 0.753 44 H 0.069 0.931 45 H -0.010 1.010 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.078 0.922 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.697 -10.011 11.150 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.475 6.475 4 N -0.351 5.351 5 C -0.052 4.052 6 C -0.040 4.040 7 O -0.296 6.296 8 C 0.011 3.989 9 H 0.119 0.881 10 C 0.306 3.694 11 O -0.439 6.439 12 N -0.364 5.364 13 C 0.022 3.978 14 C -0.110 4.110 15 H 0.113 0.887 16 C 0.012 3.988 17 N -0.355 5.355 18 C -0.367 4.367 19 H 0.097 0.903 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.037 3.963 27 C -0.120 4.120 28 H 0.086 0.914 29 C -0.185 4.185 30 C -0.032 4.032 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.849 -10.328 11.241 30.020 hybrid contribution 0.599 1.232 -1.216 1.832 sum -25.249 -9.096 10.026 28.649 Atomic orbital electron populations 1.21991 0.87369 1.06365 1.06713 1.21806 0.92613 0.81926 0.73900 1.90741 1.72076 1.32782 1.51924 1.48321 1.05728 1.07498 1.73600 1.22802 0.99235 0.82308 1.00821 1.23434 0.78922 1.03347 0.98270 1.88092 1.21055 1.27060 1.93414 1.22140 0.89495 0.86726 1.00535 0.88094 1.20340 0.88452 0.84115 0.76472 1.90712 1.78430 1.26136 1.48616 1.45907 1.06856 1.12320 1.71353 1.21243 0.78257 0.96250 1.02028 1.22343 0.95832 0.96531 0.96257 0.88743 1.21503 0.88506 0.95335 0.93506 1.44819 1.09454 1.71215 1.09976 1.19474 0.96817 1.31751 0.88646 0.90319 1.25632 0.96128 1.02406 1.01883 1.70065 1.03481 1.52315 1.33948 0.84992 0.77770 0.77191 0.79276 1.19175 1.21885 1.21806 1.21773 0.95155 0.92872 0.86536 1.22434 0.93576 0.99048 0.96928 0.91421 1.21607 1.01180 1.01916 0.93821 1.22000 0.81995 1.00748 0.98490 0.86564 0.89319 0.86456 0.89394 0.84335 0.84470 0.91334 0.75136 0.90159 0.92630 0.96028 0.95574 0.94346 0.91266 0.99227 0.90696 0.92657 0.92797 0.90327 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 8.69 71.24 0.62 -0.27 16 2 C 0.51 8.19 7.82 87.66 0.69 8.88 16 3 O -0.59 -16.13 16.55 -3.06 -0.05 -16.18 16 4 N -0.62 -8.48 3.02 -817.24 -2.47 -10.94 16 5 C 0.07 0.42 6.54 86.35 0.56 0.98 16 6 C 0.04 0.33 6.98 72.08 0.50 0.84 16 7 O -0.38 -7.72 9.92 -130.01 -1.29 -9.01 16 8 C 0.07 1.47 3.19 29.97 0.10 1.57 16 9 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.52 13.91 7.18 87.66 0.63 14.54 16 11 O -0.56 -19.79 16.51 15.94 0.26 -19.52 16 12 N -0.71 -17.46 5.36 -463.05 -2.48 -19.95 16 13 C 0.15 4.10 4.99 86.38 0.43 4.53 16 14 C -0.09 -2.90 2.48 -9.60 -0.02 -2.92 16 15 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 16 C 0.14 5.52 6.52 86.73 0.57 6.08 16 17 N -0.63 -32.75 3.39 -692.00 -2.35 -35.09 16 18 C -0.24 -13.55 10.27 84.03 0.86 -12.69 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 21 N -0.95 -57.24 10.09 21.65 0.22 -57.02 16 22 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.16 7.99 5.36 86.85 0.47 8.45 16 27 C -0.10 -3.64 3.09 -9.40 -0.03 -3.67 16 28 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 29 C -0.13 -3.74 9.31 71.98 0.67 -3.07 16 30 C 0.09 1.67 5.89 86.37 0.51 2.18 16 31 H 0.12 0.04 8.01 -2.39 -0.02 0.02 16 32 H 0.09 0.65 8.12 -2.38 -0.02 0.63 16 33 H 0.12 0.01 7.66 -2.39 -0.02 -0.01 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.14 -0.25 6.05 -2.39 -0.01 -0.27 16 36 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.41 8.65 8.32 -92.71 -0.77 7.88 16 39 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 41 H 0.02 0.89 7.77 -2.39 -0.02 0.87 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 44 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 45 H -0.01 -0.54 7.98 -2.38 -0.02 -0.56 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 49 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.10 2.01 7.08 -2.39 -0.02 1.99 16 Total: -1.00 -83.45 398.04 1.05 -82.41 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.16 Total: 14.94 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 7.01 Total: 21.98 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -7.08 Total: -123.01 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.08 Total: -44.71 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -83.45 1.05 -82.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093170449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.076 kcal (2) G-P(sol) polarization free energy of solvation -83.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds