Wall clock time and date at job start Tue Mar 31 2020 23:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99841 * 2 1 4 4 N 1.34773 * 120.00054 * 180.02562 * 2 1 3 5 5 C 1.47157 * 120.97926 * 354.05267 * 4 2 1 6 6 C 1.53299 * 108.38287 * 129.44344 * 5 4 2 7 7 O 1.42965 * 109.22183 * 52.29971 * 6 5 4 8 8 C 1.42957 * 114.16593 * 297.41876 * 7 6 5 9 9 C 1.47152 * 120.98552 * 173.76964 * 4 2 1 10 10 H 1.08998 * 109.68069 * 110.82916 * 9 4 2 11 11 C 1.50706 * 109.67640 * 350.27957 * 9 4 2 12 12 O 1.21276 * 120.00507 * 302.55852 * 11 9 4 13 13 N 1.34778 * 119.99648 * 122.56095 * 11 9 4 14 14 C 1.46495 * 119.99741 * 180.02562 * 13 11 9 15 15 C 1.53007 * 109.46794 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.88697 * 54.30113 * 15 14 13 17 17 C 1.54907 * 111.00636 * 290.41457 * 15 14 13 18 18 N 1.47471 * 104.81067 * 204.94993 * 17 15 14 19 19 C 1.36938 * 125.62693 * 204.07315 * 18 17 15 20 20 H 1.08004 * 119.99872 * 5.12214 * 19 18 17 21 21 C 1.38813 * 119.99901 * 185.13004 * 19 18 17 22 22 N 1.31618 * 119.99673 * 354.74323 * 21 19 18 23 23 Si 1.86794 * 120.00119 * 174.74737 * 21 19 18 24 24 H 1.48502 * 109.47560 * 94.99324 * 23 21 19 25 25 H 1.48498 * 109.47263 * 214.99728 * 23 21 19 26 26 H 1.48503 * 109.47156 * 334.99803 * 23 21 19 27 27 C 1.47023 * 108.72125 * 24.07342 * 18 17 15 28 28 C 1.54323 * 107.27198 * 358.97346 * 27 18 17 29 29 H 1.08998 * 110.87194 * 96.24268 * 28 27 18 30 30 C 1.52997 * 110.71590 * 219.44366 * 28 27 18 31 31 H 1.08995 * 109.47061 * 239.99796 * 1 2 3 32 32 H 1.09000 * 109.46986 * 119.99817 * 1 2 3 33 33 H 1.09001 * 109.47067 * 359.97438 * 1 2 3 34 34 H 1.08998 * 109.67701 * 249.16179 * 5 4 2 35 35 H 1.08996 * 109.68546 * 9.71960 * 5 4 2 36 36 H 1.09001 * 109.51136 * 172.22234 * 6 5 4 37 37 H 1.08998 * 109.51263 * 292.32260 * 6 5 4 38 38 H 1.09003 * 109.51196 * 182.51192 * 8 7 6 39 39 H 1.09002 * 109.51432 * 302.60622 * 8 7 6 40 40 H 0.97001 * 120.00090 * 359.97438 * 13 11 9 41 41 H 1.08997 * 109.47216 * 299.99483 * 14 13 11 42 42 H 1.09003 * 109.47502 * 60.00061 * 14 13 11 43 43 H 1.08998 * 110.36514 * 323.76029 * 17 15 14 44 44 H 1.09000 * 110.36141 * 86.07853 * 17 15 14 45 45 H 0.97009 * 119.99493 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.87843 * 239.55585 * 27 18 17 47 47 H 1.08996 * 109.88024 * 118.39542 * 27 18 17 48 48 H 1.09009 * 109.46719 * 173.52189 * 30 28 27 49 49 H 1.08995 * 109.47416 * 293.51959 * 30 28 27 50 50 H 1.08997 * 109.47531 * 53.52445 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4729 -2.4506 0.1296 6 6 1.9455 -3.3796 -0.9945 7 8 3.3739 -3.4388 -0.9870 8 6 4.0129 -2.1859 -1.2431 9 6 3.6458 -1.1961 -0.1374 10 1 4.0960 -1.5161 0.8022 11 6 4.1487 0.1774 -0.5004 12 8 3.7369 0.7300 -1.4983 13 7 5.0563 0.7916 0.2841 14 6 5.5449 2.1270 -0.0683 15 6 6.5584 2.5921 0.9793 16 1 7.3565 1.8595 1.1000 17 6 5.8637 2.8848 2.3325 18 7 6.7468 3.8538 3.0078 19 6 6.8210 4.0578 4.3599 20 1 6.2599 3.4265 5.0329 21 6 7.6174 5.0762 4.8654 22 7 8.3807 5.7785 4.0551 23 14 7.6060 5.4498 6.6956 24 1 8.7245 4.7291 7.3550 25 1 7.7679 6.9112 6.9035 26 1 6.3165 5.0060 7.2833 27 6 7.5340 4.5643 1.9895 28 6 7.1339 3.9864 0.6156 29 1 6.3731 4.6057 0.1404 30 6 8.3589 3.8469 -0.2904 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 1.0277 0.0005 34 1 1.7008 -2.8991 1.0966 35 1 0.3986 -2.2877 0.0439 36 1 1.5389 -4.3785 -0.8364 37 1 1.6013 -2.9941 -1.9542 38 1 5.0936 -2.3260 -1.2641 39 1 3.6777 -1.7960 -2.2043 40 1 5.3855 0.3499 1.0825 41 1 6.0234 2.0922 -1.0470 42 1 4.7075 2.8242 -0.0978 43 1 4.8787 3.3210 2.1667 44 1 5.7808 1.9714 2.9216 45 1 8.9375 6.4900 4.4084 46 1 8.5977 4.4029 2.1640 47 1 7.3081 5.6301 2.0234 48 1 8.0750 3.3328 -1.2087 49 1 8.7461 4.8365 -0.5329 50 1 9.1284 3.2720 0.2249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093211644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:26 Heat of formation + Delta-G solvation = -105.066806 kcal Electronic energy + Delta-G solvation = -31072.573860 eV Core-core repulsion = 26906.941131 eV Total energy + Delta-G solvation = -4165.632730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08091 -40.20969 -39.34320 -39.27043 -36.00585 -35.89343 -34.67382 -33.18497 -32.57084 -30.81231 -30.73710 -28.61418 -27.86765 -26.84145 -25.63583 -24.34882 -23.24267 -22.23376 -21.58827 -20.97937 -20.13308 -18.96654 -18.56068 -17.94629 -17.75089 -17.31099 -16.81574 -16.61889 -16.39839 -16.08927 -15.99034 -15.80400 -15.57887 -15.30721 -14.81975 -14.73106 -14.56982 -14.31863 -14.12142 -14.06894 -13.48077 -13.31447 -13.26051 -13.15203 -13.14839 -12.96957 -12.82148 -12.70497 -12.44682 -12.41270 -12.04458 -11.96404 -11.86413 -11.59514 -11.44857 -11.39666 -11.32912 -10.85155 -10.71215 -10.59626 -10.03702 -9.68260 -8.91588 -7.87074 -5.22459 1.36174 1.43618 1.46122 1.55339 1.58559 2.09737 2.10877 2.47746 2.82794 3.30836 3.48056 3.58180 3.60409 3.75839 3.82521 3.87044 3.92498 3.93404 4.00241 4.19674 4.21811 4.35989 4.38613 4.47302 4.48350 4.56667 4.57739 4.60333 4.69593 4.78296 4.79621 4.82593 4.90497 4.93556 5.02548 5.06914 5.15070 5.24567 5.32400 5.38460 5.44634 5.51437 5.69863 5.78024 5.98814 6.18030 6.24160 6.56488 7.06843 7.08453 7.36154 7.75358 8.41310 9.23670 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.002678 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.762230 B =10454.316920 C =11170.242889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.491 3.509 3 O -0.563 6.563 4 N -0.612 5.612 5 C 0.072 3.928 6 C 0.037 3.963 7 O -0.381 6.381 8 C 0.072 3.928 9 C 0.092 3.908 10 H 0.113 0.887 11 C 0.533 3.467 12 O -0.570 6.570 13 N -0.715 5.715 14 C 0.157 3.843 15 C -0.088 4.088 16 H 0.094 0.906 17 C 0.142 3.858 18 N -0.628 5.628 19 C -0.246 4.246 20 H 0.081 0.919 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.979 3.021 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.193 3.807 28 C -0.102 4.102 29 H 0.067 0.933 30 C -0.125 4.125 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.057 0.943 38 H 0.125 0.875 39 H 0.052 0.948 40 H 0.408 0.592 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.005 0.995 44 H 0.046 0.954 45 H 0.247 0.753 46 H 0.017 0.983 47 H 0.002 0.998 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -23.296 -11.551 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.282 3.718 3 O -0.441 6.441 4 N -0.350 5.350 5 C -0.049 4.049 6 C -0.040 4.040 7 O -0.299 6.299 8 C -0.007 4.007 9 C -0.016 4.016 10 H 0.131 0.869 11 C 0.320 3.680 12 O -0.449 6.449 13 N -0.368 5.368 14 C 0.032 3.968 15 C -0.107 4.107 16 H 0.113 0.887 17 C 0.017 3.983 18 N -0.354 5.354 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.807 3.193 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.068 3.932 28 C -0.122 4.122 29 H 0.085 0.915 30 C -0.183 4.183 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.070 0.930 40 H 0.243 0.757 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.020 0.980 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.629 -22.371 -12.078 29.332 hybrid contribution 0.263 1.135 1.469 1.875 sum -14.366 -21.236 -10.609 27.747 Atomic orbital electron populations 1.21921 0.87572 1.05859 1.06510 1.21856 0.92761 0.82526 0.74667 1.90812 1.70335 1.32879 1.50027 1.48262 1.04964 1.07827 1.73950 1.22846 0.99408 0.81577 1.01057 1.23322 0.80331 1.02518 0.97808 1.88002 1.20396 1.29171 1.92331 1.22661 0.99940 0.83187 0.94872 1.21802 0.83443 0.93601 1.02723 0.86927 1.20094 0.77822 0.87003 0.83087 1.90649 1.57625 1.66959 1.29660 1.45780 1.44245 1.18395 1.28334 1.20961 0.95310 0.83088 0.97393 1.22467 0.97284 0.97303 0.93694 0.88739 1.21663 0.92076 0.92112 0.92446 1.44809 1.44798 1.43603 1.02233 1.19463 1.23451 1.12232 0.82299 0.90095 1.25695 0.99330 0.98379 1.02511 1.70205 1.30259 1.24710 1.34652 0.85052 0.78019 0.76715 0.79488 1.20989 1.22087 1.19426 1.20976 0.93680 0.93327 0.85177 1.22321 0.98445 0.95364 0.96091 0.91503 1.21629 0.96009 1.01926 0.98721 0.86277 0.86837 0.90118 0.88647 0.85156 0.84130 0.92453 0.85699 0.92958 0.75665 0.90891 0.94268 0.97736 0.93610 0.94368 0.96465 0.98024 0.90670 0.92642 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.69 71.24 0.62 -1.39 16 2 C 0.49 11.67 7.43 87.66 0.65 12.33 16 3 O -0.56 -20.37 13.03 20.45 0.27 -20.10 16 4 N -0.61 -11.04 3.03 -798.44 -2.42 -13.46 16 5 C 0.07 0.54 6.56 86.35 0.57 1.11 16 6 C 0.04 0.29 6.99 72.08 0.50 0.79 16 7 O -0.38 -5.49 10.74 -148.98 -1.60 -7.09 16 8 C 0.07 1.21 6.24 71.94 0.45 1.66 16 9 C 0.09 1.86 3.48 44.08 0.15 2.01 16 10 H 0.11 1.85 7.93 -2.39 -0.02 1.83 16 11 C 0.53 15.59 4.46 87.66 0.39 15.98 16 12 O -0.57 -21.53 14.62 20.46 0.30 -21.23 16 13 N -0.72 -20.16 5.45 -463.05 -2.52 -22.68 16 14 C 0.16 5.07 5.12 86.38 0.44 5.51 16 15 C -0.09 -3.08 2.51 -9.40 -0.02 -3.10 16 16 H 0.09 3.07 8.05 -2.39 -0.02 3.05 16 17 C 0.14 6.17 6.56 86.85 0.57 6.73 16 18 N -0.63 -33.87 3.40 -691.88 -2.35 -36.22 16 19 C -0.25 -14.29 10.27 84.03 0.86 -13.42 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.07 -3.88 5.48 84.86 0.47 -3.41 16 22 N -0.95 -58.76 10.34 21.65 0.22 -58.54 16 23 Si 0.98 46.89 29.56 68.60 2.03 48.92 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.19 9.99 4.97 86.73 0.43 10.42 16 28 C -0.10 -3.96 3.02 -9.61 -0.03 -3.99 16 29 H 0.07 2.60 8.04 -2.39 -0.02 2.58 16 30 C -0.13 -3.94 9.16 71.98 0.66 -3.28 16 31 H 0.12 0.73 7.78 -2.39 -0.02 0.71 16 32 H 0.11 0.82 7.90 -2.39 -0.02 0.80 16 33 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.13 0.18 6.04 -2.39 -0.01 0.16 16 36 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.06 7.94 -2.39 -0.02 1.04 16 40 H 0.41 9.61 8.28 -92.71 -0.77 8.84 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.04 1.52 8.03 -2.39 -0.02 1.50 16 43 H 0.00 0.23 7.96 -2.39 -0.02 0.21 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 46 H 0.02 0.97 7.16 -2.39 -0.02 0.95 16 47 H 0.00 0.09 7.37 -2.39 -0.02 0.07 16 48 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 Total: -1.00 -87.03 392.36 0.81 -86.23 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.16 Total: 16.24 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 6.71 Total: 27.94 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -7.06 Total: -130.89 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -1.03 Total: -48.43 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -87.03 0.81 -86.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093211644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.839 kcal (2) G-P(sol) polarization free energy of solvation -87.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds