Wall clock time and date at job start Tue Mar 31 2020 23:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00443 * 2 1 4 4 N 1.34785 * 119.99866 * 180.02562 * 2 1 3 5 5 C 1.47155 * 120.97989 * 4.49829 * 4 2 1 6 6 C 1.53298 * 108.38385 * 230.51517 * 5 4 2 7 7 O 1.42965 * 109.21909 * 307.69986 * 6 5 4 8 8 C 1.42962 * 114.17036 * 62.58358 * 7 6 5 9 9 C 1.47150 * 120.98023 * 184.47555 * 4 2 1 10 10 H 1.08997 * 109.68436 * 249.24569 * 9 4 2 11 11 C 1.50698 * 109.68259 * 9.76549 * 9 4 2 12 12 O 1.21284 * 120.00043 * 46.89715 * 11 9 4 13 13 N 1.34778 * 120.00018 * 226.89502 * 11 9 4 14 14 C 1.46499 * 119.99849 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.46815 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.88384 * 57.43214 * 15 14 13 17 17 C 1.54901 * 111.00732 * 293.55273 * 15 14 13 18 18 N 1.47428 * 104.83382 * 204.91793 * 17 15 14 19 19 C 1.36933 * 125.65080 * 204.09554 * 18 17 15 20 20 H 1.08004 * 119.99712 * 9.01321 * 19 18 17 21 21 C 1.38812 * 120.00250 * 189.01767 * 19 18 17 22 22 N 1.31621 * 120.00283 * 192.94370 * 21 19 18 23 23 Si 1.86803 * 119.99798 * 12.94394 * 21 19 18 24 24 H 1.48500 * 109.46901 * 174.15551 * 23 21 19 25 25 H 1.48497 * 109.47232 * 54.15095 * 23 21 19 26 26 H 1.48500 * 109.47025 * 294.15321 * 23 21 19 27 27 C 1.47020 * 108.70095 * 24.35160 * 18 17 15 28 28 C 1.54331 * 107.26840 * 358.58866 * 27 18 17 29 29 H 1.09004 * 110.66608 * 96.52006 * 28 27 18 30 30 C 1.52998 * 110.85567 * 219.67138 * 28 27 18 31 31 H 1.09002 * 109.47292 * 181.14854 * 1 2 3 32 32 H 1.08996 * 109.47368 * 301.15552 * 1 2 3 33 33 H 1.09007 * 109.47154 * 61.15332 * 1 2 3 34 34 H 1.08994 * 109.68431 * 350.23896 * 5 4 2 35 35 H 1.09000 * 109.67923 * 110.75590 * 5 4 2 36 36 H 1.08990 * 109.51159 * 67.62238 * 6 5 4 37 37 H 1.08998 * 109.51136 * 187.78224 * 6 5 4 38 38 H 1.08998 * 109.51741 * 177.49474 * 8 7 6 39 39 H 1.08998 * 109.50983 * 57.33579 * 8 7 6 40 40 H 0.97001 * 119.99829 * 0.02562 * 13 11 9 41 41 H 1.09006 * 109.47145 * 60.00705 * 14 13 11 42 42 H 1.08994 * 109.47519 * 300.00113 * 14 13 11 43 43 H 1.08997 * 110.37223 * 86.07511 * 17 15 14 44 44 H 1.08997 * 110.46185 * 323.79870 * 17 15 14 45 45 H 0.96998 * 119.99758 * 5.16781 * 22 21 19 46 46 H 1.09002 * 109.87938 * 118.13782 * 27 18 17 47 47 H 1.09000 * 109.88350 * 239.29965 * 27 18 17 48 48 H 1.08998 * 109.47313 * 173.69298 * 30 28 27 49 49 H 1.09000 * 109.47078 * 293.69743 * 30 28 27 50 50 H 1.09005 * 109.47046 * 53.68943 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4703 -2.4521 -0.1000 6 6 1.9682 -3.3682 1.0237 7 8 3.3961 -3.4276 0.9846 8 6 4.0406 -2.1719 1.2120 9 6 3.6488 -1.1945 0.0979 10 1 4.0742 -1.5267 -0.8490 11 6 4.1609 0.1837 0.4286 12 8 3.6407 0.8274 1.3152 13 7 5.1971 0.7010 -0.2609 14 6 5.6946 2.0410 0.0603 15 6 6.8659 2.3847 -0.8622 16 1 6.5674 2.3228 -1.9087 17 6 8.0838 1.4710 -0.5772 18 7 9.2524 2.2476 -1.0297 19 6 10.4584 1.7246 -1.4131 20 1 10.5687 0.6576 -1.5392 21 6 11.5392 2.5656 -1.6397 22 7 12.6136 2.1077 -2.2466 23 14 11.4689 4.3474 -1.0832 24 1 12.7881 4.9898 -1.3118 25 1 11.1357 4.4016 0.3629 26 1 10.4268 5.0673 -1.8585 27 6 8.9104 3.6771 -0.9952 28 6 7.4431 3.7860 -0.5296 29 1 7.3929 3.9793 0.5420 30 6 6.7036 4.8751 -1.3093 31 1 -0.3634 -1.0275 0.0206 32 1 -0.3634 0.5316 0.8794 33 1 -0.3634 0.4958 -0.9002 34 1 0.3982 -2.2880 0.0080 35 1 1.6758 -2.9112 -1.0670 36 1 1.6466 -2.9713 1.9864 37 1 1.5584 -4.3688 0.8861 38 1 5.1216 -2.3118 1.2100 39 1 3.7264 -1.7707 2.1755 40 1 5.6129 0.1863 -0.9702 41 1 6.0300 2.0652 1.0971 42 1 4.8953 2.7686 -0.0802 43 1 8.0027 0.5431 -1.1432 44 1 8.1595 1.2585 0.4892 45 1 12.6222 1.2052 -2.6022 46 1 9.5634 4.1976 -0.2946 47 1 9.0142 4.1072 -1.9914 48 1 5.6465 4.8577 -1.0441 49 1 7.1247 5.8493 -1.0609 50 1 6.8129 4.6941 -2.3787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093211646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:31 Heat of formation + Delta-G solvation = -53.720585 kcal Electronic energy + Delta-G solvation = -31090.768540 eV Core-core repulsion = 26927.362350 eV Total energy + Delta-G solvation = -4163.406190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27450 -39.12435 -38.59224 -38.08227 -35.16683 -34.67569 -33.10613 -32.48202 -31.04872 -30.17828 -29.82213 -27.98168 -26.03932 -25.88020 -24.73832 -22.76349 -22.26897 -21.14237 -20.30826 -19.94522 -19.22270 -17.97012 -17.42539 -17.20250 -16.90927 -16.41526 -15.97813 -15.52238 -15.50028 -15.19362 -15.17905 -14.68388 -14.59444 -13.99786 -13.93794 -13.53549 -13.48738 -13.28125 -13.12441 -12.83213 -12.69859 -12.45652 -12.39478 -12.29887 -12.02192 -11.89318 -11.62559 -11.44086 -11.12973 -11.11732 -10.71422 -10.58770 -10.57758 -10.28592 -9.87133 -9.84559 -9.49660 -9.24542 -9.10286 -8.92913 -8.74282 -8.68903 -6.99216 -6.28607 -3.19514 2.18827 2.38550 2.96129 3.03219 3.42654 3.44009 3.51053 3.72941 4.15222 4.24733 4.33669 4.50752 4.55732 4.63831 4.67530 4.68541 4.86999 4.88403 4.98654 5.04188 5.06770 5.10412 5.14854 5.23595 5.24269 5.35191 5.48018 5.49154 5.56620 5.68912 5.78416 5.87828 5.94084 6.04562 6.08658 6.11622 6.30259 6.39355 6.44275 6.52592 6.53821 6.62017 6.78573 6.84979 6.95466 7.56690 7.67768 7.89889 8.35147 8.38920 9.06607 9.58448 10.25475 11.22479 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.002689 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.195807 B =10408.880906 C =11487.379073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.502 3.498 3 O -0.497 6.497 4 N -0.613 5.613 5 C 0.071 3.929 6 C 0.043 3.957 7 O -0.371 6.371 8 C 0.063 3.937 9 C 0.093 3.907 10 H 0.097 0.903 11 C 0.526 3.474 12 O -0.510 6.510 13 N -0.722 5.722 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.083 0.917 17 C 0.143 3.857 18 N -0.614 5.614 19 C -0.319 4.319 20 H 0.078 0.922 21 C -0.024 4.024 22 N -0.931 5.931 23 Si 1.073 2.927 24 H -0.303 1.303 25 H -0.298 1.298 26 H -0.286 1.286 27 C 0.107 3.893 28 C -0.093 4.093 29 H 0.077 0.923 30 C -0.140 4.140 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.024 0.976 45 H 0.261 0.739 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.877 -9.666 4.334 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.291 3.709 3 O -0.370 6.370 4 N -0.352 5.352 5 C -0.052 4.052 6 C -0.035 4.035 7 O -0.289 6.289 8 C -0.015 4.015 9 C -0.014 4.014 10 H 0.115 0.885 11 C 0.310 3.690 12 O -0.384 6.384 13 N -0.375 5.375 14 C 0.017 3.983 15 C -0.133 4.133 16 H 0.101 0.899 17 C 0.017 3.983 18 N -0.341 5.341 19 C -0.447 4.447 20 H 0.096 0.904 21 C -0.223 4.223 22 N -0.573 5.573 23 Si 0.908 3.092 24 H -0.231 1.231 25 H -0.227 1.227 26 H -0.213 1.213 27 C -0.017 4.017 28 C -0.112 4.112 29 H 0.095 0.905 30 C -0.198 4.198 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.858 -7.400 5.019 28.307 hybrid contribution -0.886 -1.611 -0.439 1.890 sum -27.744 -9.011 4.580 29.528 Atomic orbital electron populations 1.21991 0.91653 1.04142 1.05440 1.20822 0.90597 0.83107 0.76365 1.90913 1.68863 1.30948 1.46262 1.48001 1.05007 1.06590 1.75589 1.22618 0.98228 0.83811 1.00498 1.23053 0.81847 1.00825 0.97776 1.88021 1.18540 1.29628 1.92716 1.22860 0.99054 0.83321 0.96313 1.21818 0.82257 0.95810 1.01550 0.88535 1.19538 0.79805 0.86570 0.83055 1.90714 1.55651 1.60335 1.31721 1.45846 1.34336 1.18793 1.38480 1.21267 0.95384 0.82770 0.98853 1.22703 0.94369 0.96769 0.99440 0.89851 1.21573 0.85962 0.93897 0.96874 1.44798 1.11142 1.00033 1.78170 1.20182 0.86594 0.94031 1.43858 0.90399 1.25822 0.92081 1.05136 0.99244 1.70893 1.29536 1.19046 1.37846 0.83810 0.73640 0.76224 0.75537 1.23129 1.22710 1.21309 1.22152 0.92869 0.87730 0.98969 1.22102 0.95424 0.93643 1.00065 0.90502 1.21760 0.99535 0.98156 1.00300 0.90252 0.88664 0.88754 0.87751 0.90090 0.92243 0.87246 0.86766 0.91381 0.76751 0.91601 0.91399 0.94060 0.95830 0.92946 0.94991 0.93257 0.92689 0.92593 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.13 36.00 0.36 -0.76 16 2 C 0.50 5.74 7.38 -10.98 -0.08 5.66 16 3 O -0.50 -8.17 12.51 -20.02 -0.25 -8.42 16 4 N -0.61 -5.77 3.02 -166.05 -0.50 -6.28 16 5 C 0.07 0.37 6.57 -3.53 -0.02 0.35 16 6 C 0.04 0.24 6.99 37.31 0.26 0.50 16 7 O -0.37 -3.25 10.74 -35.23 -0.38 -3.63 16 8 C 0.06 0.59 6.27 37.31 0.23 0.82 16 9 C 0.09 0.98 3.49 -68.57 -0.24 0.74 16 10 H 0.10 0.87 7.98 -51.93 -0.41 0.45 16 11 C 0.53 7.42 5.01 -10.99 -0.06 7.37 16 12 O -0.51 -9.14 13.77 -20.03 -0.28 -9.42 16 13 N -0.72 -9.67 5.41 -60.29 -0.33 -10.00 16 14 C 0.14 2.10 5.12 -4.04 -0.02 2.08 16 15 C -0.11 -1.83 2.55 -88.47 -0.23 -2.06 16 16 H 0.08 1.33 8.05 -51.93 -0.42 0.92 16 17 C 0.14 2.81 6.40 -2.53 -0.02 2.80 16 18 N -0.61 -15.16 3.34 -170.07 -0.57 -15.73 16 19 C -0.32 -9.25 10.58 -15.06 -0.16 -9.41 16 20 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 21 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 22 N -0.93 -29.68 13.70 55.49 0.76 -28.92 16 23 Si 1.07 27.49 24.50 -169.99 -4.16 23.33 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.30 -7.39 6.61 56.52 0.37 -7.01 16 26 H -0.29 -6.69 5.46 56.52 0.31 -6.39 16 27 C 0.11 2.38 4.24 -3.06 -0.01 2.36 16 28 C -0.09 -1.59 3.01 -88.78 -0.27 -1.86 16 29 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 30 C -0.14 -2.03 9.16 37.16 0.34 -1.69 16 31 H 0.08 0.26 5.14 -51.93 -0.27 0.00 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.27 5.12 -51.93 -0.27 0.00 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.40 4.57 8.22 -40.82 -0.34 4.23 16 41 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 45 H 0.26 8.18 8.73 -40.82 -0.36 7.83 16 46 H 0.03 0.76 3.88 -51.93 -0.20 0.56 16 47 H 0.05 1.14 6.04 -51.93 -0.31 0.83 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -38.72 381.57 -8.19 -46.91 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.24 Total: 0.32 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 0.00 Total: 6.07 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.64 Total: -60.92 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.90 Total: -21.47 kcal Atomic # 14 Polarization: 27.49 SS G_CDS: -4.16 Total: 23.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.72 -8.19 -46.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093211646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -38.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds