Wall clock time and date at job start Tue Mar 31 2020 23:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.54765 * 2 1 4 4 C 1.54998 * 110.61427 * 237.12432 * 2 1 3 5 5 C 1.54819 * 102.08668 * 204.31496 * 4 2 1 6 6 C 1.54094 * 104.18931 * 20.88184 * 5 4 2 7 7 H 1.09003 * 109.88274 * 242.45420 * 6 5 4 8 8 C 1.50709 * 109.87965 * 121.44973 * 6 5 4 9 9 O 1.21279 * 119.99961 * 245.00348 * 8 6 5 10 10 N 1.34777 * 119.99636 * 65.00111 * 8 6 5 11 11 C 1.46491 * 119.99689 * 180.02562 * 10 8 6 12 12 C 1.53008 * 109.46999 * 180.02562 * 11 10 8 13 13 C 1.53782 * 113.61486 * 174.99980 * 12 11 10 14 14 C 1.53778 * 87.07980 * 89.19810 * 13 12 11 15 15 N 1.46901 * 113.61096 * 139.98112 * 14 13 12 16 16 C 1.46902 * 110.99844 * 156.52804 * 15 14 13 17 17 C 1.50702 * 109.47027 * 179.97438 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31414 * 120.00152 * 0.27554 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.27723 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00084 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00035 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99834 * 24 22 20 28 28 C 1.53782 * 87.17469 * 25.38975 * 14 13 12 29 29 O 1.43747 * 107.29465 * 2.02676 * 6 5 4 30 30 H 1.09010 * 109.47304 * 182.87802 * 1 2 3 31 31 H 1.08997 * 109.47138 * 302.87667 * 1 2 3 32 32 H 1.09005 * 109.47626 * 62.87673 * 1 2 3 33 33 H 1.09001 * 110.90740 * 86.12468 * 4 2 1 34 34 H 1.08993 * 110.90978 * 322.51254 * 4 2 1 35 35 H 1.08993 * 110.48720 * 262.20149 * 5 4 2 36 36 H 1.09000 * 110.59517 * 139.61255 * 5 4 2 37 37 H 0.97005 * 119.99713 * 0.02562 * 10 8 6 38 38 H 1.08998 * 109.47342 * 59.99897 * 11 10 8 39 39 H 1.08998 * 109.47511 * 299.99417 * 11 10 8 40 40 H 1.09002 * 112.84639 * 43.80360 * 12 11 10 41 41 H 1.09001 * 113.61368 * 334.65473 * 13 12 11 42 42 H 1.09001 * 113.61399 * 203.75124 * 13 12 11 43 43 H 1.09002 * 113.61825 * 270.79445 * 14 13 12 44 44 H 1.00894 * 111.00401 * 32.57702 * 15 14 13 45 45 H 1.09004 * 109.47131 * 60.00016 * 16 15 14 46 46 H 1.08994 * 109.47471 * 299.99766 * 16 15 14 47 47 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 48 48 H 0.96991 * 119.99827 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.61077 * 89.15786 * 28 14 13 50 50 H 1.08994 * 113.61493 * 220.05414 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2184 5 6 3.4811 -1.2120 -0.7269 6 6 3.3875 -1.1218 0.8085 7 1 4.0897 -0.3752 1.1795 8 6 3.6962 -2.4640 1.4205 9 8 2.8365 -3.0650 2.0292 10 7 4.9276 -2.9964 1.2912 11 6 5.2274 -4.3013 1.8856 12 6 6.6835 -4.6714 1.5954 13 6 7.1370 -5.9712 2.2808 14 6 6.6450 -6.7117 1.0261 15 7 7.5281 -7.8078 0.6056 16 6 6.7939 -8.7985 -0.1930 17 6 7.7304 -9.9047 -0.6057 18 8 8.8948 -9.8714 -0.2674 19 7 7.2742 -10.9311 -1.3507 20 6 8.1261 -11.9376 -1.7257 21 1 9.1626 -11.9084 -1.4238 22 6 7.6543 -12.9987 -2.4889 23 7 6.3930 -13.0346 -2.8558 24 14 8.8132 -14.3742 -2.9933 25 1 8.7999 -15.4378 -1.9570 26 1 8.3710 -14.9428 -4.2919 27 1 10.1901 -13.8355 -3.1321 28 6 6.8784 -5.4021 0.2545 29 8 2.0416 -0.7348 1.1326 30 1 -0.3634 -1.0265 0.0516 31 1 -0.3633 0.5578 0.8631 32 1 -0.3634 0.4685 -0.9147 33 1 2.1482 -0.1450 -2.0960 34 1 1.4565 -1.6599 -1.4267 35 1 4.2402 -0.5267 -1.1039 36 1 3.7031 -2.2334 -1.0363 37 1 5.6152 -2.5154 0.8046 38 1 4.5680 -5.0559 1.4571 39 1 5.0731 -4.2537 2.9636 40 1 7.3696 -3.8374 1.7432 41 1 6.5698 -6.2115 3.1801 42 1 8.2150 -6.0330 2.4298 43 1 5.5973 -7.0080 1.0765 44 1 7.9705 -8.2416 1.4019 45 1 6.3856 -8.3179 -1.0821 46 1 5.9803 -9.2137 0.4016 47 1 6.3430 -10.9578 -1.6209 48 1 6.0638 -13.7750 -3.3888 49 1 7.8856 -5.3082 -0.1515 50 1 6.1030 -5.1837 -0.4797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100688581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:15 Heat of formation + Delta-G solvation = -103.169052 kcal Electronic energy + Delta-G solvation = -28625.276911 eV Core-core repulsion = 24459.726474 eV Total energy + Delta-G solvation = -4165.550437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80008 -39.73542 -38.63614 -38.02059 -35.07398 -34.05969 -33.28482 -32.75111 -32.14515 -31.19368 -28.56667 -27.00088 -25.99487 -25.63776 -24.07697 -22.92508 -22.36259 -21.71291 -20.70184 -19.41626 -18.94471 -17.87461 -17.66056 -17.02626 -16.82661 -16.46824 -15.78809 -15.43271 -15.31626 -14.99199 -14.82129 -14.57689 -14.37224 -14.31090 -13.98492 -13.73880 -13.44035 -13.30673 -12.90210 -12.85896 -12.76036 -12.41733 -12.25999 -12.18991 -11.97133 -11.65260 -11.57503 -11.51997 -11.41100 -11.36669 -11.05463 -10.98262 -10.59808 -10.46503 -10.39297 -10.35432 -10.20487 -9.77749 -9.50472 -9.37063 -8.43430 -8.06214 -7.95202 -6.41110 -3.81987 2.29116 2.53842 3.18174 3.26718 3.32749 3.47731 3.91865 3.95926 4.11872 4.16265 4.29397 4.31405 4.36166 4.40650 4.53216 4.59980 4.62863 4.72610 4.80994 4.89382 4.99169 5.09666 5.18916 5.20604 5.24826 5.26097 5.34039 5.37969 5.42852 5.47039 5.55473 5.59533 5.72548 5.73443 5.76084 5.83258 5.93828 5.94899 6.04486 6.19009 6.21660 6.33965 6.37622 7.15055 7.29537 7.55675 7.68304 7.91075 8.07038 8.62014 9.18431 9.55159 10.06626 10.76655 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.001641 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.436998 B =17054.962373 C =18104.942304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.073 0.927 4 C -0.150 4.150 5 C -0.149 4.149 6 C 0.062 3.938 7 H 0.094 0.906 8 C 0.511 3.489 9 O -0.519 6.519 10 N -0.726 5.726 11 C 0.138 3.862 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.057 3.943 15 N -0.656 5.656 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.121 4.121 29 O -0.345 6.345 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.350 0.650 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 28.322 4.996 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.091 0.909 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.000 4.000 7 H 0.112 0.888 8 C 0.295 3.705 9 O -0.393 6.393 10 N -0.380 5.380 11 C 0.015 3.985 12 C -0.146 4.146 13 C -0.169 4.169 14 C -0.054 4.054 15 N -0.289 5.289 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.159 4.159 29 O -0.263 6.263 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.305 28.013 5.211 29.679 hybrid contribution -0.132 -0.968 -0.257 1.010 sum -8.437 27.045 4.954 28.761 Atomic orbital electron populations 1.21773 0.92714 1.03436 1.02497 1.23227 0.95714 0.95165 0.84743 0.90905 1.23207 0.95690 1.01236 0.98640 1.22951 0.98918 1.03928 0.92871 1.22583 0.87499 0.94460 0.95448 0.88805 1.20470 0.82294 0.87196 0.80491 1.90742 1.46162 1.61963 1.40465 1.45900 1.12758 1.21777 1.57539 1.21208 0.94892 0.83959 0.98478 1.22465 0.95149 0.98002 0.99013 1.23175 1.02288 0.94407 0.96983 1.23094 0.95587 0.91549 0.95131 1.60249 1.30434 1.11654 1.26520 1.21730 0.95066 0.93027 0.98508 1.19839 0.89045 0.84294 0.84202 1.90517 1.18125 1.78861 1.59339 1.41874 1.12442 1.19675 1.46082 1.19710 0.94504 0.98871 1.29855 0.87919 1.25270 0.96551 0.99007 0.97147 1.69613 1.13905 1.32934 1.37873 0.85851 0.80111 0.80470 0.77812 1.20430 1.20930 1.19405 1.23163 1.02874 0.94770 0.95083 1.89027 1.25665 1.73212 1.38380 0.91441 0.91707 0.90909 0.89652 0.89982 0.89394 0.89693 0.76460 0.91031 0.91165 0.89637 0.91243 0.88612 0.91207 0.82957 0.89732 0.93892 0.77464 0.91877 0.88781 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.66 37.16 0.36 -0.53 16 2 C 0.07 0.47 3.97 -25.68 -0.10 0.36 16 3 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.15 -0.84 6.59 -24.72 -0.16 -1.00 16 5 C -0.15 -0.80 6.61 -25.20 -0.17 -0.97 16 6 C 0.06 0.48 3.84 -27.31 -0.10 0.38 16 7 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 8 C 0.51 5.37 6.95 -10.98 -0.08 5.29 16 9 O -0.52 -8.05 16.53 -14.02 -0.23 -8.28 16 10 N -0.73 -5.61 5.53 -60.29 -0.33 -5.94 16 11 C 0.14 1.22 5.35 -4.04 -0.02 1.20 16 12 C -0.13 -1.01 3.94 -89.71 -0.35 -1.37 16 13 C -0.13 -1.23 7.26 -25.92 -0.19 -1.42 16 14 C 0.06 0.67 3.77 -66.90 -0.25 0.42 16 15 N -0.66 -10.40 6.18 -107.13 -0.66 -11.06 16 16 C 0.05 0.88 6.02 -4.97 -0.03 0.85 16 17 C 0.44 10.49 7.82 -10.98 -0.09 10.41 16 18 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 19 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C -0.12 -1.21 7.43 -25.83 -0.19 -1.41 16 29 O -0.34 -3.60 10.44 -54.81 -0.57 -4.17 16 30 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.51 7.69 -51.93 -0.40 0.11 16 37 H 0.40 1.93 8.47 -40.82 -0.35 1.58 16 38 H 0.07 0.75 7.40 -51.93 -0.38 0.36 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 44 H 0.35 5.73 8.26 -39.29 -0.32 5.41 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 410.81 15.07 6.19 6.19 Total: -1.00 -35.37 410.81 -9.93 -45.30 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -8.43 Total: 12.07 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.62 Total: 4.13 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.33 Total: -55.51 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.72 Total: -28.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.37 -9.93 -45.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100688581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.871 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds