Wall clock time and date at job start Tue Mar 31 2020 23:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.28732 * 2 1 4 4 C 1.54375 * 110.32864 * 237.76145 * 2 1 3 5 5 N 1.48556 * 104.59344 * 264.96139 * 4 2 1 6 6 C 1.46903 * 111.00051 * 200.95769 * 5 4 2 7 7 C 1.50700 * 109.47029 * 290.12426 * 6 5 4 8 8 O 1.21297 * 119.99891 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.37088 * 120.00483 * 180.02562 * 9 7 6 11 11 H 1.08008 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00318 * 180.02562 * 10 9 7 13 13 N 1.31420 * 120.00048 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00281 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46931 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46837 * 119.99991 * 14 12 10 17 17 H 1.48497 * 109.47171 * 239.99610 * 14 12 10 18 18 C 1.48821 * 104.23766 * 320.48498 * 5 4 2 19 19 C 1.54262 * 110.32154 * 122.12166 * 2 1 3 20 20 H 1.09002 * 110.32521 * 0.02562 * 19 2 1 21 21 C 1.53001 * 110.32554 * 237.89445 * 19 2 1 22 22 N 1.46499 * 109.46899 * 176.42759 * 21 19 2 23 23 C 1.34785 * 119.99562 * 180.02562 * 22 21 19 24 24 O 1.21283 * 120.00028 * 359.97438 * 23 22 21 25 25 C 1.50703 * 119.99748 * 180.02562 * 23 22 21 26 26 H 1.08999 * 110.45427 * 57.39084 * 25 23 22 27 27 C 1.54510 * 110.50699 * 179.97438 * 25 23 22 28 28 C 1.54477 * 104.06098 * 118.64351 * 27 25 23 29 29 O 1.44437 * 104.80483 * 23.97698 * 28 27 25 30 30 C 1.44426 * 105.27279 * 319.48670 * 29 28 27 31 31 H 1.09001 * 109.47377 * 297.87706 * 1 2 3 32 32 H 1.09001 * 109.47155 * 57.87756 * 1 2 3 33 33 H 1.08993 * 109.47279 * 177.87412 * 1 2 3 34 34 H 1.09009 * 110.40529 * 23.73350 * 4 2 1 35 35 H 1.08990 * 110.41629 * 146.17317 * 4 2 1 36 36 H 1.09001 * 109.46764 * 50.12109 * 6 5 4 37 37 H 1.08996 * 109.47572 * 170.12319 * 6 5 4 38 38 H 0.97008 * 119.99370 * 359.97438 * 9 7 6 39 39 H 0.96996 * 120.00147 * 179.97438 * 13 12 10 40 40 H 1.09001 * 110.45345 * 280.77851 * 18 5 4 41 41 H 1.09001 * 110.49959 * 158.24614 * 18 5 4 42 42 H 1.09003 * 109.46976 * 296.43313 * 21 19 2 43 43 H 1.09004 * 109.47185 * 56.42630 * 21 19 2 44 44 H 0.96993 * 120.00524 * 0.02562 * 22 21 19 45 45 H 1.09002 * 110.50656 * 237.28056 * 27 25 23 46 46 H 1.08993 * 110.51215 * 359.97438 * 27 25 23 47 47 H 1.09000 * 110.37324 * 142.80249 * 28 27 25 48 48 H 1.08995 * 110.37634 * 265.03178 * 28 27 25 49 49 H 1.08997 * 110.37052 * 281.68407 * 30 29 28 50 50 H 1.08994 * 110.36851 * 159.34397 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7722 -1.2244 5 7 2.3147 -2.1473 -0.7203 6 6 3.2650 -2.8610 -1.5838 7 6 2.6105 -3.1657 -2.9067 8 8 1.4650 -2.8225 -3.1099 9 7 3.2980 -3.8195 -3.8640 10 6 2.7028 -4.0962 -5.0675 11 1 1.6828 -3.7906 -5.2485 12 6 3.4114 -4.7707 -6.0543 13 7 4.6523 -5.1430 -5.8340 14 14 2.6002 -5.1483 -7.6940 15 1 1.2095 -4.6276 -7.6898 16 1 3.3686 -4.5005 -8.7872 17 1 2.5774 -6.6176 -7.9083 18 6 2.8822 -1.9415 0.6400 19 6 2.0657 -0.7692 1.2252 20 1 1.2387 -1.1471 1.8263 21 6 2.9654 0.1359 2.0692 22 7 3.3944 -0.5851 3.2702 23 6 4.1985 0.0190 4.1675 24 8 4.5672 1.1592 3.9805 25 6 4.6403 -0.7228 5.4027 26 1 5.1564 -1.6433 5.1300 27 6 5.5515 0.1707 6.2738 28 6 4.7841 0.3014 7.6081 29 8 3.9306 -0.8628 7.6586 30 6 3.4301 -1.0262 6.3137 31 1 -0.3634 0.4805 0.9084 32 1 -0.3633 0.5464 -0.8704 33 1 -0.3633 -1.0269 -0.0381 34 1 1.3213 -0.7878 -2.0201 35 1 2.9941 -0.3242 -1.5800 36 1 4.1445 -2.2386 -1.7484 37 1 3.5639 -3.7926 -1.1033 38 1 4.2142 -4.0936 -3.7016 39 1 5.1469 -5.6141 -6.5226 40 1 3.9374 -1.6755 0.5763 41 1 2.7510 -2.8368 1.2478 42 1 3.8402 0.4241 1.4863 43 1 2.4122 1.0291 2.3597 44 1 3.0999 -1.4970 3.4196 45 1 6.5168 -0.3095 6.4339 46 1 5.6827 1.1487 5.8109 47 1 5.4793 0.2987 8.4475 48 1 4.1863 1.2128 7.6144 49 1 2.6232 -0.3193 6.1206 50 1 3.0854 -2.0485 6.1588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101794903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:13 Heat of formation + Delta-G solvation = -119.676359 kcal Electronic energy + Delta-G solvation = -29515.461358 eV Core-core repulsion = 25349.195110 eV Total energy + Delta-G solvation = -4166.266247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82639 -39.65259 -38.69995 -37.78399 -35.23247 -33.95770 -33.13007 -32.66647 -31.20883 -30.57514 -29.46286 -27.63511 -26.32174 -24.99363 -24.02526 -23.31022 -22.37239 -20.98466 -20.67384 -19.77927 -19.06668 -18.01511 -17.77844 -17.09795 -16.29726 -16.05968 -15.95431 -15.74879 -15.57531 -15.16430 -14.93266 -14.51485 -14.21419 -14.06622 -13.82803 -13.74475 -13.39465 -13.32288 -12.98331 -12.92727 -12.56779 -12.30042 -12.10090 -11.98133 -11.80505 -11.74971 -11.57786 -11.40156 -11.26360 -11.18156 -10.95163 -10.89341 -10.65983 -10.58124 -10.35155 -10.31848 -10.23187 -10.13190 -9.50913 -9.43686 -8.52257 -8.04175 -7.95188 -6.42480 -3.83185 2.21553 2.73342 3.15463 3.26047 3.33143 3.48983 3.89521 3.92312 3.97588 4.21729 4.26069 4.36769 4.46889 4.56180 4.59021 4.67097 4.75249 4.82809 5.08460 5.11559 5.14712 5.18590 5.23412 5.23875 5.26860 5.29548 5.46557 5.50689 5.51777 5.55849 5.57432 5.69400 5.72668 5.81229 5.88845 5.94607 6.04701 6.10300 6.11991 6.24470 6.26328 6.38744 6.46840 7.07432 7.10742 7.18796 7.54641 7.81424 8.05693 8.61166 9.17702 9.53938 10.05781 10.75427 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.001883 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.133779 B =14866.347102 C =15602.574903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.075 0.925 4 C 0.040 3.960 5 N -0.481 5.481 6 C 0.034 3.966 7 C 0.445 3.555 8 O -0.577 6.577 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.032 3.968 19 C -0.101 4.101 20 H 0.089 0.911 21 C 0.127 3.873 22 N -0.725 5.725 23 C 0.521 3.479 24 O -0.536 6.536 25 C -0.147 4.147 26 H 0.112 0.888 27 C -0.147 4.147 28 C 0.044 3.956 29 O -0.371 6.371 30 C 0.058 3.942 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.403 0.597 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 9.069 23.775 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.087 4.087 5 N -0.205 5.205 6 C -0.098 4.098 7 C 0.230 3.770 8 O -0.461 6.461 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.096 4.096 19 C -0.120 4.120 20 H 0.107 0.893 21 C 0.003 3.997 22 N -0.377 5.377 23 C 0.306 3.694 24 O -0.413 6.413 25 C -0.169 4.169 26 H 0.130 0.870 27 C -0.185 4.185 28 C -0.033 4.033 29 O -0.290 6.290 30 C -0.020 4.020 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.237 0.763 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.088 9.564 23.538 25.407 hybrid contribution 1.131 -0.412 -1.038 1.589 sum 1.043 9.152 22.500 24.312 Atomic orbital electron populations 1.21785 0.93917 1.02820 1.00996 1.21864 0.96875 0.98443 0.93440 0.90694 1.23260 1.00626 0.87456 0.97406 1.65213 1.39403 1.15394 1.00500 1.22061 0.93680 0.99499 0.94540 1.19690 0.87688 0.84240 0.85341 1.90504 1.18022 1.56602 1.80946 1.41868 1.14878 1.50435 1.13086 1.19742 0.99458 1.33811 0.89668 0.87868 1.25263 0.95650 0.97116 1.00007 1.69622 1.09430 1.39999 1.35352 0.85804 0.79341 0.78029 0.81195 1.19225 1.20794 1.20762 1.23291 0.96519 0.97737 0.92086 1.22252 0.97859 0.95341 0.96541 0.89303 1.21563 0.98287 0.94871 0.84948 1.46035 1.50773 1.18079 1.22773 1.20308 0.78138 0.86860 0.84081 1.90698 1.55660 1.18165 1.76763 1.22744 0.98834 1.00911 0.94412 0.87012 1.22975 0.98682 1.02057 0.94795 1.23482 0.92845 0.88937 0.98012 1.89153 1.65020 1.47257 1.27551 1.23352 0.94395 1.02741 0.81482 0.93290 0.92495 0.91464 0.87964 0.94514 0.93334 0.89371 0.77549 0.91951 0.93826 0.90281 0.91244 0.91112 0.76296 0.90019 0.87984 0.88689 0.91945 0.91718 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.90 37.16 0.33 -1.19 16 2 C -0.09 -0.97 3.30 -89.24 -0.29 -1.27 16 3 H 0.07 0.76 7.71 -51.93 -0.40 0.36 16 4 C 0.04 0.61 5.35 -2.19 -0.01 0.60 16 5 N -0.48 -7.57 5.07 -231.18 -1.17 -8.74 16 6 C 0.03 0.59 5.30 -4.97 -0.03 0.57 16 7 C 0.45 10.37 7.58 -10.99 -0.08 10.29 16 8 O -0.58 -15.31 14.42 5.54 0.08 -15.23 16 9 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 11 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 13 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 14 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.03 0.36 5.78 -2.03 -0.01 0.35 16 19 C -0.10 -0.95 2.75 -89.23 -0.25 -1.19 16 20 H 0.09 0.77 7.71 -51.93 -0.40 0.37 16 21 C 0.13 1.13 4.78 -4.04 -0.02 1.11 16 22 N -0.73 -5.42 5.40 -60.29 -0.33 -5.74 16 23 C 0.52 4.74 7.01 -10.98 -0.08 4.66 16 24 O -0.54 -6.97 15.28 5.55 0.08 -6.89 16 25 C -0.15 -0.99 3.51 -90.20 -0.32 -1.30 16 26 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 27 C -0.15 -1.03 6.67 -25.16 -0.17 -1.20 16 28 C 0.04 0.30 7.63 37.93 0.29 0.59 16 29 O -0.37 -3.16 11.65 -35.23 -0.41 -3.57 16 30 C 0.06 0.37 7.17 37.94 0.27 0.64 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.88 6.63 -51.92 -0.34 1.54 16 35 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 36 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 37 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 38 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.04 0.48 7.64 -51.93 -0.40 0.09 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.40 2.07 8.36 -40.82 -0.34 1.73 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.88 6.50 -51.93 -0.34 0.54 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 50 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -33.56 401.00 -9.00 -42.57 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.34 Total: 8.94 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.60 Total: 4.72 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.83 Total: -52.55 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.25 Total: -25.68 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.56 -9.00 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101794903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.111 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds