Wall clock time and date at job start Tue Mar 31 2020 23:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.28732 * 2 1 4 4 C 1.54375 * 110.32864 * 237.76145 * 2 1 3 5 5 N 1.48556 * 104.59344 * 264.96139 * 4 2 1 6 6 C 1.46903 * 111.00051 * 200.95769 * 5 4 2 7 7 C 1.50700 * 109.47029 * 290.12426 * 6 5 4 8 8 O 1.21297 * 119.99891 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.37088 * 120.00483 * 180.02562 * 9 7 6 11 11 H 1.08008 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00318 * 180.02562 * 10 9 7 13 13 N 1.31420 * 120.00048 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00281 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46931 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46837 * 119.99991 * 14 12 10 17 17 H 1.48497 * 109.47171 * 239.99610 * 14 12 10 18 18 C 1.48821 * 104.23766 * 320.48498 * 5 4 2 19 19 C 1.54262 * 110.32154 * 122.12166 * 2 1 3 20 20 H 1.09002 * 110.32521 * 0.02562 * 19 2 1 21 21 C 1.53001 * 110.32554 * 237.89445 * 19 2 1 22 22 N 1.46499 * 109.46899 * 176.42759 * 21 19 2 23 23 C 1.34785 * 119.99562 * 180.02562 * 22 21 19 24 24 O 1.21283 * 120.00028 * 359.97438 * 23 22 21 25 25 C 1.50703 * 119.99748 * 180.02562 * 23 22 21 26 26 H 1.08999 * 110.45427 * 57.39084 * 25 23 22 27 27 C 1.54510 * 110.50699 * 179.97438 * 25 23 22 28 28 C 1.54477 * 104.06098 * 118.64351 * 27 25 23 29 29 O 1.44437 * 104.80483 * 23.97698 * 28 27 25 30 30 C 1.44426 * 105.27279 * 319.48670 * 29 28 27 31 31 H 1.09001 * 109.47377 * 297.87706 * 1 2 3 32 32 H 1.09001 * 109.47155 * 57.87756 * 1 2 3 33 33 H 1.08993 * 109.47279 * 177.87412 * 1 2 3 34 34 H 1.09009 * 110.40529 * 23.73350 * 4 2 1 35 35 H 1.08990 * 110.41629 * 146.17317 * 4 2 1 36 36 H 1.09001 * 109.46764 * 50.12109 * 6 5 4 37 37 H 1.08996 * 109.47572 * 170.12319 * 6 5 4 38 38 H 0.97008 * 119.99370 * 359.97438 * 9 7 6 39 39 H 0.96996 * 120.00147 * 179.97438 * 13 12 10 40 40 H 1.09001 * 110.45345 * 280.77851 * 18 5 4 41 41 H 1.09001 * 110.49959 * 158.24614 * 18 5 4 42 42 H 1.09003 * 109.46976 * 296.43313 * 21 19 2 43 43 H 1.09004 * 109.47185 * 56.42630 * 21 19 2 44 44 H 0.96993 * 120.00524 * 0.02562 * 22 21 19 45 45 H 1.09002 * 110.50656 * 237.28056 * 27 25 23 46 46 H 1.08993 * 110.51215 * 359.97438 * 27 25 23 47 47 H 1.09000 * 110.37324 * 142.80249 * 28 27 25 48 48 H 1.08995 * 110.37634 * 265.03178 * 28 27 25 49 49 H 1.08997 * 110.37052 * 281.68407 * 30 29 28 50 50 H 1.08994 * 110.36851 * 159.34397 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7722 -1.2244 5 7 2.3147 -2.1473 -0.7203 6 6 3.2650 -2.8610 -1.5838 7 6 2.6105 -3.1657 -2.9067 8 8 1.4650 -2.8225 -3.1099 9 7 3.2980 -3.8195 -3.8640 10 6 2.7028 -4.0962 -5.0675 11 1 1.6828 -3.7906 -5.2485 12 6 3.4114 -4.7707 -6.0543 13 7 4.6523 -5.1430 -5.8340 14 14 2.6002 -5.1483 -7.6940 15 1 1.2095 -4.6276 -7.6898 16 1 3.3686 -4.5005 -8.7872 17 1 2.5774 -6.6176 -7.9083 18 6 2.8822 -1.9415 0.6400 19 6 2.0657 -0.7692 1.2252 20 1 1.2387 -1.1471 1.8263 21 6 2.9654 0.1359 2.0692 22 7 3.3944 -0.5851 3.2702 23 6 4.1985 0.0190 4.1675 24 8 4.5672 1.1592 3.9805 25 6 4.6403 -0.7228 5.4027 26 1 5.1564 -1.6433 5.1300 27 6 5.5515 0.1707 6.2738 28 6 4.7841 0.3014 7.6081 29 8 3.9306 -0.8628 7.6586 30 6 3.4301 -1.0262 6.3137 31 1 -0.3634 0.4805 0.9084 32 1 -0.3633 0.5464 -0.8704 33 1 -0.3633 -1.0269 -0.0381 34 1 1.3213 -0.7878 -2.0201 35 1 2.9941 -0.3242 -1.5800 36 1 4.1445 -2.2386 -1.7484 37 1 3.5639 -3.7926 -1.1033 38 1 4.2142 -4.0936 -3.7016 39 1 5.1469 -5.6141 -6.5226 40 1 3.9374 -1.6755 0.5763 41 1 2.7510 -2.8368 1.2478 42 1 3.8402 0.4241 1.4863 43 1 2.4122 1.0291 2.3597 44 1 3.0999 -1.4970 3.4196 45 1 6.5168 -0.3095 6.4339 46 1 5.6827 1.1487 5.8109 47 1 5.4793 0.2987 8.4475 48 1 4.1863 1.2128 7.6144 49 1 2.6232 -0.3193 6.1206 50 1 3.0854 -2.0485 6.1588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101794903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:12 Heat of formation + Delta-G solvation = -146.250915 kcal Electronic energy + Delta-G solvation = -29516.613717 eV Core-core repulsion = 25349.195110 eV Total energy + Delta-G solvation = -4167.418607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50195 -40.77310 -39.68555 -39.16811 -36.23445 -35.79432 -34.24650 -33.31600 -33.19999 -31.35479 -30.10669 -29.00977 -27.28242 -26.65660 -24.92549 -24.10557 -23.11566 -21.97699 -21.44767 -21.06387 -20.41489 -19.83145 -18.59166 -17.71283 -17.66631 -17.05745 -16.81039 -16.64980 -16.46612 -16.38054 -15.97743 -15.92522 -15.61394 -15.35533 -14.97865 -14.71387 -14.46156 -14.35350 -13.98270 -13.82440 -13.61195 -13.51983 -13.29679 -13.15021 -12.97475 -12.82369 -12.53630 -12.42705 -12.38153 -12.32647 -12.17999 -12.08804 -11.79302 -11.76015 -11.60642 -11.54875 -11.48256 -10.88702 -10.84826 -10.30811 -10.14313 -10.00594 -9.35158 -8.47008 -5.95390 1.35797 1.40927 1.53549 1.55048 2.05870 2.09294 2.28070 2.82490 2.99591 3.19673 3.37513 3.39942 3.55566 3.66316 3.79267 3.84042 3.88922 4.10986 4.18257 4.25704 4.27892 4.31410 4.32159 4.39620 4.42045 4.52346 4.62322 4.65768 4.71005 4.73078 4.76269 4.80732 4.83804 4.92507 5.00119 5.01435 5.03656 5.16640 5.17856 5.28671 5.40671 5.40917 5.48487 5.74149 5.85454 5.95311 6.09941 6.49612 6.60756 7.13293 7.18103 7.56776 8.12889 8.70741 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.001883 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.133779 B =14866.347102 C =15602.574903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 H 0.089 0.911 4 C 0.038 3.962 5 N -0.502 5.502 6 C 0.047 3.953 7 C 0.442 3.558 8 O -0.614 6.614 9 N -0.576 5.576 10 C -0.330 4.330 11 H 0.078 0.922 12 C -0.015 4.015 13 N -0.922 5.922 14 Si 0.992 3.008 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.034 3.966 19 C -0.084 4.084 20 H 0.105 0.895 21 C 0.135 3.865 22 N -0.712 5.712 23 C 0.520 3.480 24 O -0.580 6.580 25 C -0.141 4.141 26 H 0.134 0.866 27 C -0.149 4.149 28 C 0.042 3.958 29 O -0.390 6.390 30 C 0.057 3.943 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.417 0.583 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 8.374 25.402 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.107 0.893 4 C -0.090 4.090 5 N -0.226 5.226 6 C -0.085 4.085 7 C 0.229 3.771 8 O -0.500 6.500 9 N -0.214 5.214 10 C -0.460 4.460 11 H 0.096 0.904 12 C -0.214 4.214 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.094 4.094 19 C -0.103 4.103 20 H 0.123 0.877 21 C 0.011 3.989 22 N -0.364 5.364 23 C 0.307 3.693 24 O -0.460 6.460 25 C -0.163 4.163 26 H 0.152 0.848 27 C -0.187 4.187 28 C -0.034 4.034 29 O -0.309 6.309 30 C -0.020 4.020 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.127 0.873 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.343 8.838 25.189 26.697 hybrid contribution 0.976 -0.162 -1.520 1.814 sum 1.319 8.677 23.669 25.243 Atomic orbital electron populations 1.21740 0.93731 1.01713 1.01932 1.21829 0.96963 0.98825 0.92450 0.89320 1.23168 0.99426 0.88211 0.98168 1.65158 1.39821 1.15499 1.02156 1.21915 0.93736 1.01193 0.91650 1.20773 0.87248 0.82279 0.86796 1.90481 1.19917 1.57519 1.82059 1.41944 1.15122 1.51287 1.13060 1.19679 0.99024 1.35688 0.91594 0.90379 1.26032 0.96172 0.96335 1.02860 1.69679 1.10133 1.39965 1.36498 0.84877 0.78076 0.78248 0.77176 1.19832 1.19677 1.19578 1.23412 0.96935 0.99405 0.89606 1.22122 0.98062 0.94401 0.95758 0.87654 1.21374 0.97555 0.94815 0.85126 1.45910 1.50036 1.18604 1.21888 1.20708 0.77584 0.86352 0.84639 1.90689 1.57337 1.20156 1.77797 1.22766 0.99111 1.01227 0.93175 0.84827 1.22967 0.99521 1.01321 0.94844 1.23558 0.92917 0.88458 0.98496 1.89135 1.65366 1.47690 1.28717 1.23483 0.93916 1.04081 0.80493 0.90682 0.93386 0.93395 0.92100 0.94938 0.91786 0.87079 0.77111 0.91358 0.93145 0.88116 0.92549 0.91125 0.74566 0.88782 0.89920 0.87258 0.92334 0.92123 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.90 71.98 0.64 -2.19 16 2 C -0.08 -1.73 3.30 -9.90 -0.03 -1.76 16 3 H 0.09 1.67 7.71 -2.39 -0.02 1.65 16 4 C 0.04 1.17 5.35 86.45 0.46 1.64 16 5 N -0.50 -15.28 5.07 -885.32 -4.49 -19.77 16 6 C 0.05 1.59 5.30 85.56 0.45 2.04 16 7 C 0.44 21.01 7.58 87.66 0.66 21.67 16 8 O -0.61 -33.85 14.42 -3.08 -0.04 -33.89 16 9 N -0.58 -29.67 5.29 -306.98 -1.62 -31.29 16 10 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 11 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 12 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 13 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 14 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 C 0.03 0.66 5.78 86.40 0.50 1.16 16 19 C -0.08 -1.36 2.75 -9.89 -0.03 -1.39 16 20 H 0.11 1.44 7.71 -2.39 -0.02 1.42 16 21 C 0.14 2.08 4.78 86.38 0.41 2.49 16 22 N -0.71 -8.62 5.40 -463.04 -2.50 -11.12 16 23 C 0.52 8.48 7.01 87.66 0.61 9.10 16 24 O -0.58 -14.66 15.28 -3.04 -0.05 -14.71 16 25 C -0.14 -1.56 3.51 -10.52 -0.04 -1.60 16 26 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 27 C -0.15 -1.88 6.67 31.61 0.21 -1.67 16 28 C 0.04 0.51 7.63 72.48 0.55 1.07 16 29 O -0.39 -5.87 11.65 -148.98 -1.74 -7.61 16 30 C 0.06 0.58 7.17 72.49 0.52 1.10 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 2.36 6.63 -2.38 -0.02 2.35 16 35 H 0.03 0.99 7.82 -2.39 -0.02 0.97 16 36 H 0.06 1.99 7.88 -2.39 -0.02 1.97 16 37 H 0.11 3.28 8.13 -2.39 -0.02 3.26 16 38 H 0.40 19.32 7.90 -92.70 -0.73 18.59 16 39 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.05 0.96 7.64 -2.39 -0.02 0.94 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.06 8.02 -2.39 -0.02 1.04 16 43 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.42 2.68 8.36 -92.71 -0.78 1.90 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.41 6.50 -2.39 -0.02 1.39 16 47 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.66 7.86 -2.39 -0.02 0.64 16 50 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -75.19 401.00 -2.46 -77.65 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.55 Total: 31.83 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 6.22 Total: 13.34 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -8.33 Total: -111.74 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -1.83 Total: -56.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.19 -2.46 -77.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101794903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.599 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds