Wall clock time and date at job start Tue Mar 31 2020 23:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.91689 * 2 1 4 4 C 1.54906 * 111.00798 * 236.09311 * 2 1 3 5 5 N 1.47419 * 104.83823 * 204.91495 * 4 2 1 6 6 C 1.36933 * 125.65119 * 204.09091 * 5 4 2 7 7 H 1.08006 * 119.99904 * 169.98708 * 6 5 4 8 8 C 1.38805 * 120.00369 * 349.98735 * 6 5 4 9 9 N 1.31620 * 119.99848 * 350.42142 * 8 6 5 10 10 Si 1.86800 * 120.00418 * 170.41668 * 8 6 5 11 11 H 1.48503 * 109.47034 * 94.14065 * 10 8 6 12 12 H 1.48497 * 109.47062 * 214.14042 * 10 8 6 13 13 H 1.48493 * 109.46825 * 334.14395 * 10 8 6 14 14 C 1.47029 * 108.69929 * 24.13107 * 5 4 2 15 15 C 1.54324 * 107.27053 * 358.93688 * 14 5 4 16 16 H 1.08999 * 110.71720 * 96.35588 * 15 14 5 17 17 C 1.53000 * 110.71851 * 219.44545 * 15 14 5 18 18 C 1.53004 * 109.47266 * 293.54855 * 17 15 14 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 15 20 20 C 1.34777 * 120.00035 * 179.97438 * 19 18 17 21 21 O 1.21282 * 119.99701 * 0.02562 * 20 19 18 22 22 C 1.50692 * 120.00400 * 179.97438 * 20 19 18 23 23 H 1.09006 * 110.42061 * 305.85524 * 22 20 19 24 24 C 1.54486 * 110.37355 * 68.16652 * 22 20 19 25 25 C 1.54502 * 104.06431 * 142.81173 * 24 22 20 26 26 C 1.54482 * 104.06588 * 0.02562 * 25 24 22 27 27 H 1.09002 * 110.37164 * 94.85088 * 26 25 24 28 28 C 1.50692 * 110.46896 * 217.14273 * 26 25 24 29 29 N 1.34780 * 120.00286 * 291.89148 * 28 26 25 30 30 O 1.21288 * 120.00160 * 111.88716 * 28 26 25 31 31 O 1.44424 * 104.80148 * 336.02164 * 26 25 24 32 32 H 1.08997 * 109.47366 * 296.10232 * 1 2 3 33 33 H 1.09000 * 109.47049 * 56.10299 * 1 2 3 34 34 H 1.08997 * 109.47327 * 176.10237 * 1 2 3 35 35 H 1.09004 * 110.36479 * 86.07260 * 4 2 1 36 36 H 1.08999 * 110.45810 * 323.80642 * 4 2 1 37 37 H 0.97001 * 120.00413 * 180.02562 * 9 8 6 38 38 H 1.08999 * 109.88116 * 239.52345 * 14 5 4 39 39 H 1.08996 * 110.01291 * 118.43233 * 14 5 4 40 40 H 1.09001 * 109.46690 * 173.55049 * 17 15 14 41 41 H 1.08993 * 109.47532 * 53.54969 * 17 15 14 42 42 H 1.08991 * 109.46948 * 59.99894 * 18 17 15 43 43 H 1.09004 * 109.47061 * 299.99978 * 18 17 15 44 44 H 0.96999 * 120.00147 * 359.97438 * 19 18 17 45 45 H 1.08997 * 110.50778 * 24.16636 * 24 22 20 46 46 H 1.09006 * 110.50611 * 261.45829 * 24 22 20 47 47 H 1.08995 * 110.51259 * 241.35517 * 25 24 22 48 48 H 1.09001 * 110.62982 * 118.69855 * 25 24 22 49 49 H 0.96996 * 119.99635 * 359.97438 * 29 28 26 50 50 H 0.96998 * 120.00261 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7733 6 6 4.4640 -1.5668 -1.6071 7 1 5.4542 -1.7190 -1.2035 8 6 4.2425 -1.6993 -2.9709 9 7 3.0130 -1.7015 -3.4408 10 14 5.6893 -1.8743 -4.1395 11 1 5.9566 -3.3145 -4.3840 12 1 5.3702 -1.2047 -5.4260 13 1 6.8909 -1.2431 -3.5375 14 6 3.4674 -1.2741 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4478 -1.6631 1.4241 17 6 2.2349 0.0878 2.4338 18 6 2.7848 -0.7359 3.6000 19 7 2.9268 0.1215 4.7794 20 6 3.3965 -0.3922 5.9334 21 8 3.7022 -1.5643 5.9954 22 6 3.5431 0.4898 7.1464 23 1 4.1454 1.3667 6.9085 24 6 2.1545 0.9175 7.6714 25 6 2.3163 0.9131 9.2079 26 6 3.7837 0.4840 9.4297 27 1 4.4224 1.3601 9.5419 28 6 3.8955 -0.4043 10.6418 29 7 3.6768 0.1026 11.8713 30 8 4.1822 -1.5755 10.5110 31 8 4.1387 -0.2474 8.2359 32 1 -0.3634 0.4521 0.9228 33 1 -0.3633 0.5731 -0.8530 34 1 -0.3634 -1.0252 -0.0699 35 1 2.1559 -0.1721 -2.0836 36 1 1.4525 -1.6704 -1.4042 37 1 2.8582 -1.7945 -4.3938 38 1 4.2425 -0.5997 1.0600 39 1 3.6662 -2.2882 1.0425 40 1 1.2618 0.4971 2.7051 41 1 2.9222 0.9033 2.2091 42 1 3.7579 -1.1453 3.3287 43 1 2.0974 -1.5515 3.8248 44 1 2.6826 1.0589 4.7296 45 1 1.3931 0.2001 7.3655 46 1 1.9034 1.9171 7.3166 47 1 1.6349 0.1936 9.6616 48 1 2.1446 1.9095 9.6150 49 1 3.4479 1.0394 11.9759 50 1 3.7492 -0.4690 12.6516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103431493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:18 Heat of formation + Delta-G solvation = -104.443736 kcal Electronic energy + Delta-G solvation = -29360.988989 eV Core-core repulsion = 25195.383277 eV Total energy + Delta-G solvation = -4165.605711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97393 -39.67601 -38.44722 -37.95814 -35.24543 -34.27735 -33.29528 -32.61681 -31.44791 -30.68211 -30.13571 -26.99479 -25.74781 -25.11373 -23.87709 -22.60313 -21.99447 -21.08570 -20.64942 -19.70870 -19.23788 -18.39784 -17.69143 -17.11322 -16.82898 -16.74628 -16.14771 -15.56289 -15.41849 -14.98737 -14.77871 -14.65200 -14.43788 -14.21361 -13.97224 -13.61775 -13.48613 -12.99161 -12.79683 -12.68280 -12.31385 -12.24693 -12.02974 -11.99004 -11.62521 -11.51007 -11.47573 -11.15429 -11.07987 -10.75399 -10.71335 -10.70607 -10.19500 -10.17108 -10.07332 -9.95018 -9.89066 -9.74489 -9.67015 -9.42163 -9.12914 -8.53405 -6.73916 -5.70263 -3.02070 2.11746 2.37097 2.50903 2.99848 3.42614 3.48238 3.50412 3.62868 3.87612 4.16636 4.25431 4.38760 4.47108 4.53768 4.58497 4.81030 4.89442 4.92894 5.08833 5.10815 5.27666 5.27795 5.40797 5.46544 5.52329 5.58413 5.67781 5.77503 5.93952 5.97430 6.03762 6.13976 6.24456 6.25461 6.29586 6.32880 6.38031 6.53950 6.62469 6.73111 6.79194 6.83735 7.04674 7.34923 7.56572 7.65227 7.78748 7.83525 8.10290 8.31544 9.24869 9.86887 10.55109 11.42887 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.001842 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.681487 B =15196.139176 C =16106.657646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.067 0.933 4 C 0.180 3.820 5 N -0.604 5.604 6 C -0.227 4.227 7 H 0.075 0.925 8 C -0.009 4.009 9 N -0.919 5.919 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.115 4.115 18 C 0.118 3.882 19 N -0.726 5.726 20 C 0.514 3.486 21 O -0.511 6.511 22 C 0.055 3.945 23 H 0.100 0.900 24 C -0.143 4.143 25 C -0.142 4.142 26 C 0.052 3.948 27 H 0.100 0.900 28 C 0.521 3.479 29 N -0.853 5.853 30 O -0.512 6.512 31 O -0.313 6.313 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.399 0.601 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.401 0.599 50 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 14.500 28.574 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.055 3.945 5 N -0.330 5.330 6 C -0.355 4.355 7 H 0.093 0.907 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.013 3.987 15 C -0.111 4.111 16 H 0.092 0.908 17 C -0.153 4.153 18 C -0.005 4.005 19 N -0.379 5.379 20 C 0.297 3.703 21 O -0.384 6.384 22 C -0.007 4.007 23 H 0.117 0.883 24 C -0.181 4.181 25 C -0.180 4.180 26 C -0.010 4.010 27 H 0.117 0.883 28 C 0.303 3.697 29 N -0.420 5.420 30 O -0.384 6.384 31 O -0.229 6.229 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.110 0.890 49 H 0.229 0.771 50 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.708 12.602 28.070 31.294 hybrid contribution 0.456 0.760 -0.284 0.930 sum -5.252 13.362 27.786 31.276 Atomic orbital electron populations 1.21636 0.95659 1.01494 1.00324 1.22619 0.94475 0.99209 0.97240 0.91408 1.21433 0.85040 0.95221 0.92822 1.44477 1.10802 1.78525 0.99199 1.19033 0.87903 1.40551 0.88053 0.90703 1.24812 0.96527 1.02002 0.97172 1.69961 1.17800 1.56305 1.12567 0.86142 0.81636 0.77628 0.80615 1.21641 1.21659 1.20635 1.21375 0.93580 0.97360 0.86418 1.22129 0.98240 0.97614 0.93164 0.90773 1.21774 1.00904 0.98657 0.93954 1.21537 1.02305 0.93303 0.83341 1.45943 1.67034 1.13965 1.10966 1.20035 0.78051 0.88467 0.83709 1.90795 1.47348 1.16599 1.83691 1.22951 0.94988 0.94388 0.88372 0.88268 1.22923 0.96757 1.03523 0.94876 1.22911 0.95094 1.03184 0.96789 1.22915 0.97088 0.94274 0.86706 0.88268 1.20166 0.76642 0.88378 0.84481 1.43719 1.74911 1.15320 1.08039 1.90845 1.44917 1.16821 1.85858 1.89447 1.73321 1.47676 1.12479 0.93784 0.92971 0.92850 0.91597 0.95573 0.93794 0.96001 0.96161 0.91612 0.91196 0.90739 0.91368 0.76744 0.89528 0.88813 0.89759 0.88964 0.77065 0.76229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.31 37.15 0.35 -1.62 16 2 C -0.12 -2.06 3.09 -88.48 -0.27 -2.33 16 3 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 4 C 0.18 4.32 4.89 -2.53 -0.01 4.31 16 5 N -0.60 -15.69 3.39 -170.08 -0.58 -16.27 16 6 C -0.23 -6.48 10.24 -15.06 -0.15 -6.64 16 7 H 0.08 2.09 7.85 -52.48 -0.41 1.67 16 8 C -0.01 -0.25 5.40 -17.43 -0.09 -0.35 16 9 N -0.92 -27.34 10.68 55.49 0.59 -26.75 16 10 Si 0.91 22.48 29.56 -169.99 -5.03 17.45 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.14 2.91 5.99 -3.06 -0.02 2.89 16 15 C -0.09 -1.52 2.45 -88.79 -0.22 -1.73 16 16 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 17 C -0.11 -1.40 4.71 -26.73 -0.13 -1.52 16 18 C 0.12 1.50 5.52 -4.04 -0.02 1.48 16 19 N -0.73 -7.37 5.56 -60.30 -0.33 -7.71 16 20 C 0.51 6.55 7.07 -10.99 -0.08 6.47 16 21 O -0.51 -9.49 16.56 -13.62 -0.23 -9.71 16 22 C 0.05 0.48 3.71 -27.11 -0.10 0.38 16 23 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 24 C -0.14 -0.76 6.62 -25.16 -0.17 -0.93 16 25 C -0.14 -0.61 6.62 -25.16 -0.17 -0.78 16 26 C 0.05 0.37 3.70 -27.11 -0.10 0.27 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 C 0.52 4.68 7.35 -10.99 -0.08 4.60 16 29 N -0.85 -3.12 8.87 31.22 0.28 -2.84 16 30 O -0.51 -7.79 17.39 -13.64 -0.24 -8.03 16 31 O -0.31 -3.90 10.18 -64.20 -0.65 -4.55 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.07 1.77 6.94 -51.93 -0.36 1.41 16 36 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.02 0.45 7.76 -51.93 -0.40 0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16 42 H 0.07 1.12 7.49 -51.93 -0.39 0.73 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.40 2.57 8.47 -40.82 -0.35 2.23 16 45 H 0.09 0.58 7.86 -51.93 -0.41 0.17 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.08 0.43 7.87 -51.93 -0.41 0.03 16 48 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 49 H 0.40 -0.03 8.83 -40.82 -0.36 -0.39 16 50 H 0.41 1.24 8.93 -40.82 -0.36 0.88 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -40.76 403.91 -9.84 -50.60 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.48 Total: -2.79 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.26 Total: 4.51 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.04 Total: -53.56 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.12 Total: -22.29 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -40.76 -9.84 -50.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103431493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.848 kcal (2) G-P(sol) polarization free energy of solvation -40.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds