Wall clock time and date at job start Tue Mar 31 2020 23:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.91689 * 2 1 4 4 C 1.54906 * 111.00798 * 236.09311 * 2 1 3 5 5 N 1.47419 * 104.83823 * 204.91495 * 4 2 1 6 6 C 1.36933 * 125.65119 * 204.09091 * 5 4 2 7 7 H 1.08006 * 119.99904 * 169.98708 * 6 5 4 8 8 C 1.38805 * 120.00369 * 349.98735 * 6 5 4 9 9 N 1.31620 * 119.99848 * 350.42142 * 8 6 5 10 10 Si 1.86800 * 120.00418 * 170.41668 * 8 6 5 11 11 H 1.48503 * 109.47034 * 94.14065 * 10 8 6 12 12 H 1.48497 * 109.47062 * 214.14042 * 10 8 6 13 13 H 1.48493 * 109.46825 * 334.14395 * 10 8 6 14 14 C 1.47029 * 108.69929 * 24.13107 * 5 4 2 15 15 C 1.54324 * 107.27053 * 358.93688 * 14 5 4 16 16 H 1.08999 * 110.71720 * 96.35588 * 15 14 5 17 17 C 1.53000 * 110.71851 * 219.44545 * 15 14 5 18 18 C 1.53004 * 109.47266 * 293.54855 * 17 15 14 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 15 20 20 C 1.34777 * 120.00035 * 179.97438 * 19 18 17 21 21 O 1.21282 * 119.99701 * 0.02562 * 20 19 18 22 22 C 1.50692 * 120.00400 * 179.97438 * 20 19 18 23 23 H 1.09006 * 110.42061 * 305.85524 * 22 20 19 24 24 C 1.54486 * 110.37355 * 68.16652 * 22 20 19 25 25 C 1.54502 * 104.06431 * 142.81173 * 24 22 20 26 26 C 1.54482 * 104.06588 * 0.02562 * 25 24 22 27 27 H 1.09002 * 110.37164 * 94.85088 * 26 25 24 28 28 C 1.50692 * 110.46896 * 217.14273 * 26 25 24 29 29 N 1.34780 * 120.00286 * 291.89148 * 28 26 25 30 30 O 1.21288 * 120.00160 * 111.88716 * 28 26 25 31 31 O 1.44424 * 104.80148 * 336.02164 * 26 25 24 32 32 H 1.08997 * 109.47366 * 296.10232 * 1 2 3 33 33 H 1.09000 * 109.47049 * 56.10299 * 1 2 3 34 34 H 1.08997 * 109.47327 * 176.10237 * 1 2 3 35 35 H 1.09004 * 110.36479 * 86.07260 * 4 2 1 36 36 H 1.08999 * 110.45810 * 323.80642 * 4 2 1 37 37 H 0.97001 * 120.00413 * 180.02562 * 9 8 6 38 38 H 1.08999 * 109.88116 * 239.52345 * 14 5 4 39 39 H 1.08996 * 110.01291 * 118.43233 * 14 5 4 40 40 H 1.09001 * 109.46690 * 173.55049 * 17 15 14 41 41 H 1.08993 * 109.47532 * 53.54969 * 17 15 14 42 42 H 1.08991 * 109.46948 * 59.99894 * 18 17 15 43 43 H 1.09004 * 109.47061 * 299.99978 * 18 17 15 44 44 H 0.96999 * 120.00147 * 359.97438 * 19 18 17 45 45 H 1.08997 * 110.50778 * 24.16636 * 24 22 20 46 46 H 1.09006 * 110.50611 * 261.45829 * 24 22 20 47 47 H 1.08995 * 110.51259 * 241.35517 * 25 24 22 48 48 H 1.09001 * 110.62982 * 118.69855 * 25 24 22 49 49 H 0.96996 * 119.99635 * 359.97438 * 29 28 26 50 50 H 0.96998 * 120.00261 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7733 6 6 4.4640 -1.5668 -1.6071 7 1 5.4542 -1.7190 -1.2035 8 6 4.2425 -1.6993 -2.9709 9 7 3.0130 -1.7015 -3.4408 10 14 5.6893 -1.8743 -4.1395 11 1 5.9566 -3.3145 -4.3840 12 1 5.3702 -1.2047 -5.4260 13 1 6.8909 -1.2431 -3.5375 14 6 3.4674 -1.2741 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4478 -1.6631 1.4241 17 6 2.2349 0.0878 2.4338 18 6 2.7848 -0.7359 3.6000 19 7 2.9268 0.1215 4.7794 20 6 3.3965 -0.3922 5.9334 21 8 3.7022 -1.5643 5.9954 22 6 3.5431 0.4898 7.1464 23 1 4.1454 1.3667 6.9085 24 6 2.1545 0.9175 7.6714 25 6 2.3163 0.9131 9.2079 26 6 3.7837 0.4840 9.4297 27 1 4.4224 1.3601 9.5419 28 6 3.8955 -0.4043 10.6418 29 7 3.6768 0.1026 11.8713 30 8 4.1822 -1.5755 10.5110 31 8 4.1387 -0.2474 8.2359 32 1 -0.3634 0.4521 0.9228 33 1 -0.3633 0.5731 -0.8530 34 1 -0.3634 -1.0252 -0.0699 35 1 2.1559 -0.1721 -2.0836 36 1 1.4525 -1.6704 -1.4042 37 1 2.8582 -1.7945 -4.3938 38 1 4.2425 -0.5997 1.0600 39 1 3.6662 -2.2882 1.0425 40 1 1.2618 0.4971 2.7051 41 1 2.9222 0.9033 2.2091 42 1 3.7579 -1.1453 3.3287 43 1 2.0974 -1.5515 3.8248 44 1 2.6826 1.0589 4.7296 45 1 1.3931 0.2001 7.3655 46 1 1.9034 1.9171 7.3166 47 1 1.6349 0.1936 9.6616 48 1 2.1446 1.9095 9.6150 49 1 3.4479 1.0394 11.9759 50 1 3.7492 -0.4690 12.6516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103431493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:17 Heat of formation + Delta-G solvation = -137.854306 kcal Electronic energy + Delta-G solvation = -29362.437780 eV Core-core repulsion = 25195.383277 eV Total energy + Delta-G solvation = -4167.054502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65152 -40.56336 -39.77396 -38.95158 -36.47638 -35.03830 -34.86886 -33.27988 -32.55416 -32.47929 -30.90448 -28.46226 -27.43196 -26.16569 -25.15858 -23.48676 -23.02786 -21.72738 -21.51657 -21.33991 -20.62003 -19.03199 -18.83735 -18.24493 -17.70362 -17.54337 -17.06505 -16.97531 -16.46450 -16.20803 -15.74124 -15.70685 -15.54212 -15.32125 -14.98305 -14.68497 -14.57752 -14.50998 -14.18033 -13.69341 -13.60899 -13.32692 -13.25197 -12.90448 -12.78040 -12.76120 -12.72278 -12.61090 -12.38928 -12.20734 -11.90864 -11.86509 -11.80439 -11.44312 -11.38938 -11.27307 -11.12771 -10.86261 -10.73553 -10.69764 -10.60734 -10.13581 -8.85377 -7.89410 -5.23755 1.43345 1.44775 1.47737 1.54696 1.54782 1.77113 2.36386 2.48132 3.09029 3.28493 3.40776 3.69153 3.70310 3.74610 3.82731 3.93498 3.94383 4.05724 4.07248 4.09101 4.27433 4.34790 4.42272 4.52988 4.57945 4.62864 4.74690 4.80833 4.84561 4.87130 4.98685 5.02224 5.03784 5.04857 5.13134 5.19286 5.30018 5.40076 5.43261 5.47161 5.54516 5.57829 5.70749 5.82044 5.87033 6.20997 6.44203 6.55870 7.08658 7.24412 7.31559 7.77128 8.43599 9.22229 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.001842 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.681487 B =15196.139176 C =16106.657646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.080 0.920 4 C 0.183 3.817 5 N -0.628 5.628 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.064 4.064 9 N -0.947 5.947 10 Si 0.977 3.023 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.269 1.269 14 C 0.132 3.868 15 C -0.079 4.079 16 H 0.074 0.926 17 C -0.096 4.096 18 C 0.122 3.878 19 N -0.703 5.703 20 C 0.505 3.495 21 O -0.584 6.584 22 C 0.054 3.946 23 H 0.139 0.861 24 C -0.136 4.136 25 C -0.133 4.133 26 C 0.045 3.955 27 H 0.140 0.860 28 C 0.512 3.488 29 N -0.824 5.824 30 O -0.591 6.591 31 O -0.371 6.371 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.029 0.971 36 H -0.009 1.009 37 H 0.248 0.752 38 H 0.029 0.971 39 H 0.002 0.998 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.422 0.578 45 H 0.066 0.934 46 H 0.141 0.859 47 H 0.069 0.931 48 H 0.143 0.857 49 H 0.423 0.577 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 18.832 30.778 36.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.098 0.902 4 C 0.058 3.942 5 N -0.354 5.354 6 C -0.376 4.376 7 H 0.091 0.909 8 C -0.258 4.258 9 N -0.596 5.596 10 Si 0.805 3.195 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.194 1.194 14 C 0.007 3.993 15 C -0.099 4.099 16 H 0.092 0.908 17 C -0.134 4.134 18 C -0.002 4.002 19 N -0.358 5.358 20 C 0.292 3.708 21 O -0.463 6.463 22 C -0.006 4.006 23 H 0.156 0.844 24 C -0.174 4.174 25 C -0.170 4.170 26 C -0.015 4.015 27 H 0.158 0.842 28 C 0.297 3.703 29 N -0.391 5.391 30 O -0.471 6.471 31 O -0.289 6.289 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.009 0.991 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.021 0.979 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.261 0.739 45 H 0.085 0.915 46 H 0.159 0.841 47 H 0.087 0.913 48 H 0.161 0.839 49 H 0.256 0.744 50 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.907 17.063 30.338 35.485 hybrid contribution 0.840 -0.604 -0.909 1.377 sum -6.068 16.459 29.428 34.260 Atomic orbital electron populations 1.21608 0.92797 1.01468 1.02614 1.22473 0.96660 0.98547 0.94145 0.90204 1.21286 0.84255 0.94105 0.94554 1.44845 1.10889 1.78487 1.01183 1.19394 0.88824 1.40360 0.89042 0.90879 1.25661 0.99189 1.02228 0.98693 1.70167 1.19676 1.57260 1.12454 0.85096 0.78784 0.77397 0.78238 1.21531 1.21464 1.19425 1.21580 0.96963 0.96744 0.83980 1.22050 0.94930 0.98323 0.94587 0.90786 1.21623 1.03306 0.97434 0.91033 1.21286 1.00431 0.93771 0.84669 1.45683 1.65808 1.14769 1.09498 1.20985 0.76486 0.88116 0.85233 1.90762 1.50627 1.19952 1.84963 1.23205 0.97821 0.93695 0.85928 0.84405 1.23012 0.93738 1.05296 0.95376 1.22986 0.92452 1.05394 0.96195 1.23306 0.99869 0.94216 0.84121 0.84235 1.20778 0.75486 0.87680 0.86363 1.43512 1.72402 1.16518 1.06621 1.90810 1.49028 1.20135 1.87090 1.89407 1.74422 1.50206 1.14902 0.89597 0.92809 0.93835 0.95268 0.99066 0.94246 0.95323 0.97947 0.87635 0.90117 0.93875 0.92490 0.73937 0.91510 0.84133 0.91259 0.83909 0.74411 0.75763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.31 71.98 0.67 -2.74 16 2 C -0.10 -3.37 3.09 -9.41 -0.03 -3.40 16 3 H 0.08 2.57 8.05 -2.39 -0.02 2.55 16 4 C 0.18 9.10 4.89 86.86 0.42 9.53 16 5 N -0.63 -33.75 3.39 -692.00 -2.35 -36.10 16 6 C -0.25 -14.57 10.24 84.03 0.86 -13.71 16 7 H 0.07 4.20 7.85 -2.91 -0.02 4.18 16 8 C -0.06 -3.80 5.40 84.86 0.46 -3.34 16 9 N -0.95 -58.53 10.68 21.65 0.23 -58.30 16 10 Si 0.98 47.28 29.56 68.60 2.03 49.31 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 C 0.13 5.68 5.99 86.73 0.52 6.20 16 15 C -0.08 -2.52 2.45 -9.61 -0.02 -2.54 16 16 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 17 C -0.10 -2.01 4.71 30.60 0.14 -1.87 16 18 C 0.12 2.98 5.52 86.38 0.48 3.46 16 19 N -0.70 -12.72 5.56 -463.08 -2.57 -15.29 16 20 C 0.51 12.63 7.07 87.65 0.62 13.25 16 21 O -0.58 -22.94 16.56 15.30 0.25 -22.69 16 22 C 0.05 0.83 3.71 30.35 0.11 0.94 16 23 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 24 C -0.14 -0.90 6.62 31.61 0.21 -0.69 16 25 C -0.13 -0.61 6.62 31.61 0.21 -0.40 16 26 C 0.05 0.54 3.70 30.35 0.11 0.66 16 27 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 28 C 0.51 8.96 7.35 87.65 0.64 9.60 16 29 N -0.82 -4.41 8.87 -173.53 -1.54 -5.95 16 30 O -0.59 -19.20 17.39 15.30 0.27 -18.93 16 31 O -0.37 -9.16 10.18 -121.28 -1.23 -10.39 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.03 1.63 6.94 -2.38 -0.02 1.61 16 36 H -0.01 -0.48 7.91 -2.39 -0.02 -0.50 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.03 1.19 7.76 -2.39 -0.02 1.17 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.60 8.06 -2.39 -0.02 1.59 16 42 H 0.04 1.33 7.49 -2.39 -0.02 1.31 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.42 3.55 8.47 -92.71 -0.79 2.77 16 45 H 0.07 0.73 7.86 -2.39 -0.02 0.71 16 46 H 0.14 -0.37 8.14 -2.38 -0.02 -0.39 16 47 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 48 H 0.14 -0.77 8.14 -2.39 -0.02 -0.78 16 49 H 0.42 -1.59 8.83 -92.71 -0.82 -2.41 16 50 H 0.41 1.99 8.93 -92.71 -0.83 1.16 16 Total: -1.00 -101.64 403.91 -0.97 -102.61 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -1.47 Total: 0.79 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.41 Total: 14.94 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -6.23 Total: -115.63 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.71 Total: -52.02 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -101.64 -0.97 -102.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103431493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.244 kcal (2) G-P(sol) polarization free energy of solvation -101.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds