Wall clock time and date at job start Tue Mar 31 2020 23:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.65539 * 2 1 4 4 C 1.54594 * 110.98853 * 236.84300 * 2 1 3 5 5 N 1.48119 * 103.42317 * 204.37366 * 4 2 1 6 6 C 1.34776 * 127.03231 * 219.29178 * 5 4 2 7 7 O 1.21277 * 119.99885 * 179.68524 * 6 5 4 8 8 C 1.50698 * 120.00217 * 359.67565 * 6 5 4 9 9 H 1.08999 * 110.83241 * 303.65409 * 8 6 5 10 10 C 1.54813 * 110.90922 * 180.02562 * 8 6 5 11 11 C 1.54098 * 104.30472 * 220.99089 * 10 8 6 12 12 O 1.43744 * 107.29564 * 357.90152 * 11 10 8 13 13 C 1.44373 * 106.97248 * 26.51652 * 12 11 10 14 14 C 1.47480 * 105.93321 * 39.02271 * 5 4 2 15 15 C 1.54010 * 107.08525 * 334.78143 * 14 5 4 16 16 H 1.08997 * 110.32606 * 120.19467 * 15 14 5 17 17 C 1.52999 * 110.32807 * 242.41420 * 15 14 5 18 18 N 1.46899 * 109.47127 * 293.54584 * 17 15 14 19 19 C 1.46897 * 111.00151 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.46865 * 179.97438 * 19 18 17 21 21 O 1.21290 * 119.99922 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99565 * 179.97438 * 20 19 18 23 23 C 1.37095 * 119.99759 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00287 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00186 * 180.02562 * 23 22 20 26 26 N 1.31413 * 119.99457 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00165 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47051 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47145 * 120.00044 * 27 25 23 30 30 H 1.48498 * 109.46924 * 239.99714 * 27 25 23 31 31 H 1.09001 * 109.47385 * 296.80755 * 1 2 3 32 32 H 1.09006 * 109.47352 * 56.81311 * 1 2 3 33 33 H 1.09000 * 109.46879 * 176.80683 * 1 2 3 34 34 H 1.09008 * 110.61708 * 85.85890 * 4 2 1 35 35 H 1.08998 * 110.54923 * 322.85688 * 4 2 1 36 36 H 1.09002 * 110.48794 * 102.24634 * 10 8 6 37 37 H 1.09002 * 110.48657 * 339.73056 * 10 8 6 38 38 H 1.08999 * 109.88182 * 117.33024 * 11 10 8 39 39 H 1.09008 * 109.87958 * 238.32904 * 11 10 8 40 40 H 1.09002 * 110.62093 * 78.43762 * 13 12 11 41 41 H 1.09000 * 110.61898 * 201.27906 * 13 12 11 42 42 H 1.08996 * 109.91370 * 94.14058 * 14 5 4 43 43 H 1.08999 * 109.91375 * 215.23407 * 14 5 4 44 44 H 1.08996 * 109.47162 * 53.54492 * 17 15 14 45 45 H 1.08999 * 109.47050 * 173.54496 * 17 15 14 46 46 H 1.00902 * 110.99966 * 56.03857 * 18 17 15 47 47 H 1.08997 * 109.47031 * 299.99432 * 19 18 17 48 48 H 1.08998 * 109.46942 * 59.99758 * 19 18 17 49 49 H 0.96995 * 120.00048 * 0.02562 * 22 20 19 50 50 H 0.97000 * 119.99757 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4321 -1.2057 -0.7584 6 6 4.5593 -1.2405 -1.4965 7 8 5.6026 -1.5999 -0.9934 8 6 4.5232 -0.8328 -2.9468 9 1 3.7916 -1.4240 -3.4975 10 6 5.9265 -0.9529 -3.5896 11 6 6.0484 0.3024 -4.4749 12 8 4.8071 1.0199 -4.3724 13 6 4.2312 0.6848 -3.0916 14 6 3.2903 -1.5680 0.6641 15 6 2.0775 -0.7915 1.2101 16 1 1.3221 -1.4830 1.5834 17 6 2.5157 0.1678 2.3184 18 7 2.9858 -0.6039 3.4766 19 6 3.4152 0.2863 4.5633 20 6 3.8890 -0.5395 5.7316 21 8 3.8712 -1.7504 5.6651 22 7 4.3334 0.0677 6.8497 23 6 4.7650 -0.6835 7.9123 24 1 4.7484 -1.7618 7.8535 25 6 5.2227 -0.0576 9.0653 26 7 5.2415 1.2544 9.1374 27 14 5.8114 -1.0811 10.5128 28 1 5.6889 -2.5235 10.1815 29 1 7.2316 -0.7580 10.8025 30 1 4.9810 -0.7753 11.7054 31 1 -0.3634 0.4635 0.9172 32 1 -0.3634 0.5625 -0.8601 33 1 -0.3633 -1.0261 -0.0572 34 1 2.1524 -0.1480 -2.0870 35 1 1.4612 -1.6601 -1.4143 36 1 5.9920 -1.8559 -4.1966 37 1 6.6993 -0.9542 -2.8209 38 1 6.8682 0.9275 -4.1209 39 1 6.2257 0.0101 -5.5100 40 1 4.7179 1.2454 -2.2934 41 1 3.1577 0.8737 -3.0922 42 1 3.1179 -2.6401 0.7588 43 1 4.1908 -1.2873 1.2103 44 1 3.3234 0.8015 1.9521 45 1 1.6715 0.7903 2.6150 46 1 3.7263 -1.2367 3.2130 47 1 4.2290 0.9211 4.2129 48 1 2.5769 0.9092 4.8753 49 1 4.3480 1.0361 6.9027 50 1 5.5614 1.6914 9.9421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105910746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:55 Heat of formation + Delta-G solvation = -116.456183 kcal Electronic energy + Delta-G solvation = -29675.151708 eV Core-core repulsion = 25509.025097 eV Total energy + Delta-G solvation = -4166.126610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95457 -39.48902 -38.33986 -37.95497 -35.40694 -33.87294 -33.22372 -32.64107 -31.25460 -30.71872 -29.63837 -27.10648 -26.79560 -25.37498 -23.99324 -23.50083 -22.40952 -21.53227 -20.20707 -19.54478 -19.20271 -17.96821 -17.83171 -17.01151 -16.78301 -16.12316 -15.97055 -15.69640 -15.30660 -14.92230 -14.74181 -14.55408 -14.40479 -14.17489 -13.88901 -13.68634 -13.55517 -13.17252 -13.16529 -13.02351 -12.65511 -12.53242 -12.29557 -12.06997 -11.91600 -11.87353 -11.72090 -11.54551 -11.48316 -11.25673 -11.07500 -10.96821 -10.90178 -10.83663 -10.33320 -10.21329 -10.18364 -10.12081 -9.51062 -9.01637 -8.46629 -8.07916 -7.95072 -6.40861 -3.81483 2.24928 2.52925 3.17297 3.27746 3.35288 3.42083 3.87026 3.91347 3.97766 4.11045 4.15656 4.25812 4.31520 4.45113 4.58820 4.62207 4.71760 4.77516 4.89771 4.91077 4.98739 5.08452 5.15256 5.19566 5.24023 5.26267 5.28740 5.32348 5.39840 5.48916 5.52091 5.56614 5.61058 5.62076 5.72911 5.78802 5.83220 5.85110 5.90118 5.98180 6.17033 6.27575 6.31946 7.17492 7.18863 7.56535 7.61948 7.81279 8.07556 8.62227 9.19000 9.55322 10.06715 10.77020 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.002037 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.277096 B =13745.199481 C =14645.594986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.085 0.915 4 C 0.097 3.903 5 N -0.619 5.619 6 C 0.540 3.460 7 O -0.531 6.531 8 C -0.142 4.142 9 H 0.111 0.889 10 C -0.144 4.144 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.060 3.940 14 C 0.107 3.893 15 C -0.094 4.094 16 H 0.100 0.900 17 C 0.068 3.932 18 N -0.670 5.670 19 C 0.051 3.949 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 1.724 -27.649 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.025 4.025 5 N -0.353 5.353 6 C 0.328 3.672 7 O -0.407 6.407 8 C -0.163 4.163 9 H 0.129 0.871 10 C -0.182 4.182 11 C -0.030 4.030 12 O -0.292 6.292 13 C -0.017 4.017 14 C -0.015 4.015 15 C -0.113 4.113 16 H 0.118 0.882 17 C -0.062 4.062 18 N -0.303 5.303 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.181 4.181 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.169 0.831 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.380 0.862 -27.209 28.206 hybrid contribution 1.197 0.370 0.701 1.436 sum -6.183 1.232 -26.508 27.247 Atomic orbital electron populations 1.21745 0.93306 1.02408 1.02446 1.22257 0.96516 0.99598 0.93721 0.89711 1.22739 0.82982 0.98999 0.97814 1.48783 1.08292 1.66229 1.12039 1.19843 0.82162 0.77759 0.87463 1.90743 1.29778 1.47381 1.72805 1.22890 1.00628 0.99207 0.93589 0.87112 1.22921 0.96252 0.99098 0.99943 1.23230 0.87137 0.91980 1.00697 1.88889 1.36037 1.68756 1.35537 1.23595 0.99756 0.91433 0.86893 1.22180 0.99163 0.99670 0.80487 1.22233 0.97157 0.97653 0.94290 0.88181 1.22008 0.99474 0.94687 0.90026 1.60112 1.43554 1.19284 1.07318 1.21668 0.99473 0.94776 0.92290 1.19806 0.84282 0.88718 0.84574 1.90523 1.59618 1.14085 1.82444 1.41869 1.56052 1.09373 1.12796 1.19758 1.38377 0.92877 0.91742 0.87858 1.25273 0.97687 0.95925 0.99167 1.69623 1.47421 1.07817 1.29496 0.85793 0.78137 0.79922 0.80458 1.19205 1.20769 1.20752 0.91629 0.92343 0.92125 0.90001 0.90367 0.89846 0.88429 0.91903 0.89421 0.91497 0.88092 0.90911 0.90400 0.95470 0.90561 0.83149 0.93922 0.89543 0.77470 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.17 37.16 0.34 -0.40 16 2 C -0.10 -0.66 3.18 -88.93 -0.28 -0.94 16 3 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 4 C 0.10 0.60 6.29 -2.31 -0.01 0.58 16 5 N -0.62 -5.93 3.29 -169.98 -0.56 -6.49 16 6 C 0.54 6.01 7.24 -10.99 -0.08 5.93 16 7 O -0.53 -8.21 15.79 5.56 0.09 -8.12 16 8 C -0.14 -1.12 2.83 -89.64 -0.25 -1.37 16 9 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 10 C -0.14 -1.14 6.43 -25.20 -0.16 -1.30 16 11 C 0.05 0.33 7.70 37.73 0.29 0.62 16 12 O -0.37 -3.33 11.52 -35.23 -0.41 -3.74 16 13 C 0.06 0.44 6.60 38.34 0.25 0.70 16 14 C 0.11 1.18 6.15 -2.98 -0.02 1.16 16 15 C -0.09 -0.87 2.83 -89.24 -0.25 -1.13 16 16 H 0.10 0.97 7.85 -51.93 -0.41 0.56 16 17 C 0.07 0.78 4.87 -3.82 -0.02 0.76 16 18 N -0.67 -10.67 6.12 -115.06 -0.70 -11.37 16 19 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 20 C 0.44 10.57 7.82 -10.98 -0.09 10.48 16 21 O -0.58 -16.06 15.78 5.55 0.09 -15.97 16 22 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 23 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 24 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 27 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.08 0.36 5.10 -51.92 -0.26 0.09 16 35 H 0.08 0.41 8.02 -51.93 -0.42 0.00 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.96 6.85 -51.93 -0.36 0.61 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 41 H 0.10 0.53 6.20 -51.93 -0.32 0.21 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.04 6.76 -51.93 -0.35 0.69 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.35 5.92 7.08 -39.29 -0.28 5.64 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -34.48 398.97 -8.52 -43.00 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -8.13 Total: 11.18 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.56 Total: 7.86 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.60 Total: -56.51 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.23 Total: -27.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.48 -8.52 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105910746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.459 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds