Wall clock time and date at job start Tue Mar 31 2020 23:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.65539 * 2 1 4 4 C 1.54594 * 110.98853 * 236.84300 * 2 1 3 5 5 N 1.48119 * 103.42317 * 204.37366 * 4 2 1 6 6 C 1.34776 * 127.03231 * 219.29178 * 5 4 2 7 7 O 1.21277 * 119.99885 * 179.68524 * 6 5 4 8 8 C 1.50698 * 120.00217 * 359.67565 * 6 5 4 9 9 H 1.08999 * 110.83241 * 303.65409 * 8 6 5 10 10 C 1.54813 * 110.90922 * 180.02562 * 8 6 5 11 11 C 1.54098 * 104.30472 * 220.99089 * 10 8 6 12 12 O 1.43744 * 107.29564 * 357.90152 * 11 10 8 13 13 C 1.44373 * 106.97248 * 26.51652 * 12 11 10 14 14 C 1.47480 * 105.93321 * 39.02271 * 5 4 2 15 15 C 1.54010 * 107.08525 * 334.78143 * 14 5 4 16 16 H 1.08997 * 110.32606 * 120.19467 * 15 14 5 17 17 C 1.52999 * 110.32807 * 242.41420 * 15 14 5 18 18 N 1.46899 * 109.47127 * 293.54584 * 17 15 14 19 19 C 1.46897 * 111.00151 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.46865 * 179.97438 * 19 18 17 21 21 O 1.21290 * 119.99922 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99565 * 179.97438 * 20 19 18 23 23 C 1.37095 * 119.99759 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00287 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00186 * 180.02562 * 23 22 20 26 26 N 1.31413 * 119.99457 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00165 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47051 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47145 * 120.00044 * 27 25 23 30 30 H 1.48498 * 109.46924 * 239.99714 * 27 25 23 31 31 H 1.09001 * 109.47385 * 296.80755 * 1 2 3 32 32 H 1.09006 * 109.47352 * 56.81311 * 1 2 3 33 33 H 1.09000 * 109.46879 * 176.80683 * 1 2 3 34 34 H 1.09008 * 110.61708 * 85.85890 * 4 2 1 35 35 H 1.08998 * 110.54923 * 322.85688 * 4 2 1 36 36 H 1.09002 * 110.48794 * 102.24634 * 10 8 6 37 37 H 1.09002 * 110.48657 * 339.73056 * 10 8 6 38 38 H 1.08999 * 109.88182 * 117.33024 * 11 10 8 39 39 H 1.09008 * 109.87958 * 238.32904 * 11 10 8 40 40 H 1.09002 * 110.62093 * 78.43762 * 13 12 11 41 41 H 1.09000 * 110.61898 * 201.27906 * 13 12 11 42 42 H 1.08996 * 109.91370 * 94.14058 * 14 5 4 43 43 H 1.08999 * 109.91375 * 215.23407 * 14 5 4 44 44 H 1.08996 * 109.47162 * 53.54492 * 17 15 14 45 45 H 1.08999 * 109.47050 * 173.54496 * 17 15 14 46 46 H 1.00902 * 110.99966 * 56.03857 * 18 17 15 47 47 H 1.08997 * 109.47031 * 299.99432 * 19 18 17 48 48 H 1.08998 * 109.46942 * 59.99758 * 19 18 17 49 49 H 0.96995 * 120.00048 * 0.02562 * 22 20 19 50 50 H 0.97000 * 119.99757 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4321 -1.2057 -0.7584 6 6 4.5593 -1.2405 -1.4965 7 8 5.6026 -1.5999 -0.9934 8 6 4.5232 -0.8328 -2.9468 9 1 3.7916 -1.4240 -3.4975 10 6 5.9265 -0.9529 -3.5896 11 6 6.0484 0.3024 -4.4749 12 8 4.8071 1.0199 -4.3724 13 6 4.2312 0.6848 -3.0916 14 6 3.2903 -1.5680 0.6641 15 6 2.0775 -0.7915 1.2101 16 1 1.3221 -1.4830 1.5834 17 6 2.5157 0.1678 2.3184 18 7 2.9858 -0.6039 3.4766 19 6 3.4152 0.2863 4.5633 20 6 3.8890 -0.5395 5.7316 21 8 3.8712 -1.7504 5.6651 22 7 4.3334 0.0677 6.8497 23 6 4.7650 -0.6835 7.9123 24 1 4.7484 -1.7618 7.8535 25 6 5.2227 -0.0576 9.0653 26 7 5.2415 1.2544 9.1374 27 14 5.8114 -1.0811 10.5128 28 1 5.6889 -2.5235 10.1815 29 1 7.2316 -0.7580 10.8025 30 1 4.9810 -0.7753 11.7054 31 1 -0.3634 0.4635 0.9172 32 1 -0.3634 0.5625 -0.8601 33 1 -0.3633 -1.0261 -0.0572 34 1 2.1524 -0.1480 -2.0870 35 1 1.4612 -1.6601 -1.4143 36 1 5.9920 -1.8559 -4.1966 37 1 6.6993 -0.9542 -2.8209 38 1 6.8682 0.9275 -4.1209 39 1 6.2257 0.0101 -5.5100 40 1 4.7179 1.2454 -2.2934 41 1 3.1577 0.8737 -3.0922 42 1 3.1179 -2.6401 0.7588 43 1 4.1908 -1.2873 1.2103 44 1 3.3234 0.8015 1.9521 45 1 1.6715 0.7903 2.6150 46 1 3.7263 -1.2367 3.2130 47 1 4.2290 0.9211 4.2129 48 1 2.5769 0.9092 4.8753 49 1 4.3480 1.0361 6.9027 50 1 5.5614 1.6914 9.9421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105910746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:54 Heat of formation + Delta-G solvation = -143.031309 kcal Electronic energy + Delta-G solvation = -29676.304091 eV Core-core repulsion = 25509.025097 eV Total energy + Delta-G solvation = -4167.278994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71019 -40.33143 -39.97153 -38.91516 -36.68675 -35.84609 -34.04665 -33.29554 -33.27644 -31.59989 -30.35684 -28.43060 -27.38044 -26.76921 -25.37467 -24.27915 -23.12440 -22.24708 -21.26049 -20.78381 -20.26797 -19.92634 -18.63417 -18.06143 -17.57023 -17.42427 -16.93538 -16.69555 -16.50170 -16.15902 -15.99194 -15.59313 -15.58057 -15.23218 -15.07485 -15.01917 -14.40919 -14.27665 -14.12343 -13.75944 -13.67388 -13.51198 -13.32575 -13.24275 -12.99598 -12.98039 -12.75923 -12.52795 -12.46267 -12.43450 -12.31437 -12.13365 -11.87169 -11.74459 -11.57443 -11.54037 -11.50910 -11.02096 -10.77633 -10.38463 -10.04432 -9.83073 -9.39235 -8.49372 -5.98224 1.34738 1.39986 1.41421 1.54526 1.77874 2.01615 2.27173 2.82817 2.87806 3.17545 3.22541 3.42873 3.46256 3.57549 3.72646 3.76570 3.84783 4.02694 4.12964 4.15105 4.17924 4.27566 4.34472 4.39794 4.40843 4.44740 4.51206 4.61234 4.65130 4.69898 4.73795 4.75942 4.80113 4.88263 4.90049 4.91192 4.98663 5.06344 5.18938 5.21229 5.38574 5.39311 5.55894 5.73645 5.84809 6.06461 6.29998 6.42239 6.57070 6.97923 7.09799 7.52788 8.08170 8.68312 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.002037 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.277096 B =13745.199481 C =14645.594986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.089 0.911 4 C 0.096 3.904 5 N -0.617 5.617 6 C 0.533 3.467 7 O -0.587 6.587 8 C -0.134 4.134 9 H 0.138 0.862 10 C -0.146 4.146 11 C 0.046 3.954 12 O -0.386 6.386 13 C 0.062 3.938 14 C 0.105 3.895 15 C -0.086 4.086 16 H 0.099 0.901 17 C 0.070 3.930 18 N -0.682 5.682 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.334 4.334 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.274 1.274 29 H -0.271 1.271 30 H -0.269 1.269 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.028 0.972 45 H 0.092 0.908 46 H 0.338 0.662 47 H 0.060 0.940 48 H 0.110 0.890 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 2.822 -29.322 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.108 0.892 4 C -0.025 4.025 5 N -0.349 5.349 6 C 0.323 3.677 7 O -0.467 6.467 8 C -0.155 4.155 9 H 0.155 0.845 10 C -0.184 4.184 11 C -0.030 4.030 12 O -0.305 6.305 13 C -0.014 4.014 14 C -0.018 4.018 15 C -0.105 4.105 16 H 0.117 0.883 17 C -0.058 4.058 18 N -0.314 5.314 19 C -0.068 4.068 20 C 0.223 3.777 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.561 5.561 27 Si 0.818 3.182 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.194 1.194 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.071 0.929 41 H 0.147 0.853 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.110 0.890 46 H 0.157 0.843 47 H 0.078 0.922 48 H 0.128 0.872 49 H 0.231 0.769 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.238 2.012 -28.906 30.413 hybrid contribution 1.751 0.020 1.203 2.125 sum -7.487 2.032 -27.703 28.769 Atomic orbital electron populations 1.21727 0.91783 1.02933 1.03070 1.22241 0.97567 0.99281 0.92023 0.89243 1.23019 0.80938 1.00111 0.98445 1.48886 1.09446 1.65256 1.11331 1.20480 0.81632 0.76885 0.88703 1.90718 1.31892 1.49989 1.74100 1.22918 1.01280 1.00069 0.91225 0.84453 1.22915 0.95678 1.00250 0.99557 1.23306 0.86678 0.91374 1.01649 1.88877 1.36510 1.69136 1.35996 1.23670 1.01153 0.90508 0.86095 1.22090 0.98605 0.99560 0.81514 1.22167 0.96196 0.97427 0.94727 0.88287 1.22119 0.99764 0.94911 0.89039 1.60162 1.42987 1.19680 1.08615 1.21541 1.00719 0.94099 0.90419 1.20905 0.82574 0.88806 0.85382 1.90489 1.60890 1.16302 1.83355 1.41937 1.56579 1.09434 1.13055 1.19701 1.40832 0.92197 0.93626 0.90411 1.26069 0.97055 0.97151 1.01105 1.69678 1.47189 1.08759 1.30448 0.84855 0.78180 0.77904 0.77294 1.19876 1.19578 1.19381 0.92172 0.90421 0.91850 0.87394 0.88729 0.88446 0.91108 0.92207 0.87410 0.92851 0.85299 0.91706 0.93549 0.95383 0.88954 0.84304 0.92204 0.87212 0.76938 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.17 71.98 0.66 -0.31 16 2 C -0.09 -0.93 3.18 -9.70 -0.03 -0.96 16 3 H 0.09 0.89 7.86 -2.39 -0.02 0.87 16 4 C 0.10 0.88 6.29 86.61 0.55 1.43 16 5 N -0.62 -11.29 3.29 -810.09 -2.67 -13.96 16 6 C 0.53 11.86 7.24 87.66 0.63 12.50 16 7 O -0.59 -19.23 15.79 -3.02 -0.05 -19.28 16 8 C -0.13 -1.90 2.83 -10.16 -0.03 -1.93 16 9 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 10 C -0.15 -2.22 6.43 31.58 0.20 -2.02 16 11 C 0.05 0.61 7.70 72.35 0.56 1.17 16 12 O -0.39 -6.07 11.52 -148.98 -1.72 -7.78 16 13 C 0.06 0.78 6.60 72.75 0.48 1.26 16 14 C 0.11 2.36 6.15 86.53 0.53 2.89 16 15 C -0.09 -1.50 2.83 -9.90 -0.03 -1.53 16 16 H 0.10 1.79 7.85 -2.39 -0.02 1.78 16 17 C 0.07 1.54 4.87 86.30 0.42 1.96 16 18 N -0.68 -21.76 6.12 -517.95 -3.17 -24.94 16 19 C 0.06 2.27 6.17 85.56 0.53 2.80 16 20 C 0.44 21.41 7.82 87.66 0.69 22.09 16 21 O -0.62 -35.72 15.78 -3.06 -0.05 -35.77 16 22 N -0.57 -30.17 5.29 -306.98 -1.62 -31.79 16 23 C -0.33 -19.43 9.68 84.04 0.81 -18.61 16 24 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 27 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 28 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 29 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 30 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.06 0.44 8.11 -2.39 -0.02 0.42 16 34 H 0.11 0.46 5.10 -2.38 -0.01 0.45 16 35 H 0.09 0.64 8.02 -2.39 -0.02 0.62 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.49 6.85 -2.39 -0.02 1.47 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.05 0.82 8.04 -2.39 -0.02 0.80 16 41 H 0.13 0.84 6.20 -2.39 -0.01 0.82 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.33 6.76 -2.39 -0.02 1.32 16 44 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.34 11.99 7.08 -89.69 -0.64 11.35 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.11 3.37 8.14 -2.39 -0.02 3.36 16 49 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -78.06 398.97 -0.93 -79.00 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.41 Total: 38.36 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.44 Total: 20.43 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -7.18 Total: -120.74 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -1.81 Total: -62.83 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -78.06 -0.93 -79.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105910746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.034 kcal (2) G-P(sol) polarization free energy of solvation -78.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds