Wall clock time and date at job start Tue Mar 31 2020 23:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00233 * 2 1 4 4 O 1.42896 * 109.47340 * 135.00307 * 3 2 1 5 5 C 1.42901 * 113.99813 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46651 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99481 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64406 * 179.97438 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.90815 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.64984 * 359.96412 * 8 6 5 30 30 H 1.07998 * 119.99596 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99929 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00038 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46904 * 14.99752 * 3 2 1 34 34 H 1.09003 * 109.46792 * 255.00264 * 3 2 1 35 35 H 1.08994 * 109.47353 * 59.99791 * 5 4 3 36 36 H 1.08998 * 109.46550 * 299.98987 * 5 4 3 37 37 H 1.09002 * 109.87786 * 59.49172 * 9 8 6 38 38 H 1.08992 * 109.88437 * 298.32885 * 9 8 6 39 39 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 40 40 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 41 41 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 42 42 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 43 43 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 44 44 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 46 46 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 47 47 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 48 48 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 49 49 H 1.08998 * 110.36629 * 322.99596 * 29 8 6 50 50 H 1.08997 * 110.36491 * 85.21098 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9078 2.4353 1.0327 6 6 4.9934 2.2571 2.0627 7 8 5.0892 1.2106 2.6680 8 7 5.8586 3.2605 2.3102 9 6 6.9594 3.2220 3.2842 10 6 7.6923 4.5776 3.2009 11 1 7.3313 5.2591 3.9712 12 6 9.2053 4.3830 3.3188 13 7 9.5329 3.8966 4.6657 14 6 10.9806 3.6973 4.8157 15 6 11.2775 3.1987 6.2065 16 8 10.3723 3.0268 6.9953 17 7 12.5490 2.9448 6.5742 18 6 12.8191 2.4907 7.8394 19 1 12.0130 2.3368 8.5414 20 6 14.1299 2.2284 8.2183 21 7 15.1102 2.4103 7.3622 22 14 14.4981 1.6103 9.9422 23 1 15.9608 1.4024 10.0918 24 1 14.0362 2.6123 10.9364 25 1 13.7897 0.3251 10.1690 26 6 7.3134 5.0912 1.7867 27 1 7.9570 4.6502 1.0254 28 6 7.3641 6.6192 1.7264 29 6 5.8580 4.5782 1.6492 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3856 2.1161 0.2659 34 1 2.4755 1.4867 -0.9927 35 1 3.2679 3.2694 1.3203 36 1 4.3581 2.6406 0.0615 37 1 7.6464 2.4132 3.0352 38 1 6.5610 3.0770 4.2883 39 1 9.7086 5.3338 3.1434 40 1 9.5367 3.6545 2.5789 41 1 9.1786 4.5235 5.3726 42 1 11.4966 4.6432 4.6507 43 1 11.3239 2.9639 4.0862 44 1 13.2730 3.0827 5.9435 45 1 14.9192 2.7317 6.4671 46 1 8.3725 6.9589 1.9631 47 1 7.0939 6.9524 0.7243 48 1 6.6618 7.0348 2.4489 49 1 5.5899 4.4751 0.5978 50 1 5.1664 5.2544 2.1518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105942980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:57 Heat of formation + Delta-G solvation = -120.321027 kcal Electronic energy + Delta-G solvation = -28616.014785 eV Core-core repulsion = 24449.720583 eV Total energy + Delta-G solvation = -4166.294202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34535 -40.34399 -39.52426 -38.50680 -36.85732 -36.11133 -34.79610 -33.98980 -33.14831 -31.72539 -29.85508 -28.15938 -27.28223 -26.72122 -26.02511 -24.86257 -22.58927 -21.68547 -21.12089 -21.02742 -20.36939 -19.98183 -18.49096 -18.17890 -17.76582 -17.46142 -17.04237 -16.96818 -16.73438 -16.27108 -16.01562 -15.66787 -15.53218 -15.31990 -15.09512 -14.91445 -14.54492 -14.28445 -14.10650 -13.79334 -13.71118 -13.40045 -13.36553 -13.23839 -13.16090 -12.96458 -12.90968 -12.71660 -12.44274 -11.92907 -11.92625 -11.90565 -11.85773 -11.67320 -11.53899 -11.49145 -11.03909 -10.92220 -10.42816 -10.28186 -10.12261 -9.76581 -9.36292 -8.94202 -6.08069 1.15774 1.47421 1.51433 1.53599 1.71087 1.81852 1.99618 2.39279 2.77471 2.93672 3.15381 3.28724 3.45669 3.52199 3.69683 3.85043 4.02386 4.09877 4.11237 4.18114 4.19076 4.22736 4.31774 4.36935 4.42278 4.43263 4.47383 4.51129 4.58567 4.63056 4.66761 4.72301 4.90063 4.91778 4.96275 5.08031 5.13811 5.19398 5.34531 5.51356 5.57618 5.63859 5.68119 5.91935 5.98038 6.06982 6.34505 6.43991 6.57009 6.73424 7.05740 7.42919 7.91720 8.53660 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.001736 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.655257 B =16124.718832 C =17586.782146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.181 4.181 3 C 0.085 3.915 4 O -0.402 6.402 5 C 0.057 3.943 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.618 5.618 9 C 0.123 3.877 10 C -0.082 4.082 11 H 0.092 0.908 12 C 0.073 3.927 13 N -0.689 5.689 14 C 0.068 3.932 15 C 0.439 3.561 16 O -0.619 6.619 17 N -0.586 5.586 18 C -0.413 4.413 19 H 0.071 0.929 20 C -0.041 4.041 21 N -0.915 5.915 22 Si 1.133 2.867 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.276 1.276 26 C -0.089 4.089 27 H 0.094 0.906 28 C -0.137 4.137 29 C 0.096 3.904 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.345 0.655 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.385 0.615 45 H 0.259 0.741 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.109 0.891 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.396 11.162 -23.690 35.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.010 3.990 4 O -0.322 6.322 5 C -0.022 4.022 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.352 5.352 9 C 0.000 4.000 10 C -0.102 4.102 11 H 0.110 0.890 12 C -0.056 4.056 13 N -0.322 5.322 14 C -0.065 4.065 15 C 0.227 3.773 16 O -0.505 6.505 17 N -0.226 5.226 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.555 5.555 22 Si 0.953 3.047 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.202 1.202 26 C -0.108 4.108 27 H 0.112 0.888 28 C -0.194 4.194 29 C -0.025 4.025 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.164 0.836 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.219 0.781 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.127 0.873 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.874 9.139 -21.895 32.957 hybrid contribution -0.342 1.000 -0.953 1.423 sum -23.216 10.139 -22.848 34.115 Atomic orbital electron populations 1.24062 0.94954 1.03564 0.97646 1.22808 0.96418 0.98167 1.02494 1.21809 0.88193 0.96574 0.92459 1.88017 1.45673 1.36501 1.61985 1.22287 0.92159 0.89309 0.98453 1.20828 0.82702 0.82230 0.83989 1.90740 1.73807 1.29239 1.52702 1.48586 1.30485 1.15502 1.40642 1.21779 0.87875 0.98833 0.91472 1.22255 0.93998 0.94513 0.99406 0.89011 1.22036 0.94625 0.99420 0.89484 1.60037 1.11603 1.55049 1.05531 1.21510 0.90521 1.01487 0.92952 1.20969 0.82299 0.82989 0.91040 1.90506 1.45908 1.58317 1.55774 1.41987 1.07221 1.59885 1.13464 1.20529 0.96361 1.46231 0.91101 0.91075 1.27808 0.90248 0.96028 1.09808 1.70970 1.33634 1.44160 1.06689 0.82637 0.76589 0.76709 0.68768 1.19524 1.19675 1.20173 1.22392 0.95406 0.97950 0.95079 0.88798 1.21700 1.02747 0.91629 1.03367 1.22840 0.98159 0.82028 0.99483 0.86703 0.86929 0.87978 0.90516 0.90199 0.87031 0.86820 0.93455 0.94100 0.92314 0.90721 0.83583 0.90905 0.88075 0.78064 0.92966 0.92069 0.90293 0.91861 0.87297 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 14.31 67.78 0.97 -0.77 16 2 C -0.18 -2.66 9.89 25.64 0.25 -2.41 16 3 C 0.08 1.10 6.35 71.24 0.45 1.55 16 4 O -0.40 -8.87 9.86 -129.94 -1.28 -10.15 16 5 C 0.06 0.87 5.42 71.24 0.39 1.25 16 6 C 0.51 13.30 7.93 87.66 0.69 14.00 16 7 O -0.59 -22.98 16.83 16.02 0.27 -22.71 16 8 N -0.62 -12.72 3.33 -811.76 -2.70 -15.42 16 9 C 0.12 3.16 6.28 86.73 0.54 3.71 16 10 C -0.08 -1.43 2.60 -9.61 -0.03 -1.46 16 11 H 0.09 1.55 8.04 -2.38 -0.02 1.53 16 12 C 0.07 1.48 5.00 86.31 0.43 1.91 16 13 N -0.69 -21.15 5.93 -517.94 -3.07 -24.22 16 14 C 0.07 2.27 6.17 85.56 0.53 2.80 16 15 C 0.44 21.30 7.82 87.66 0.69 21.98 16 16 O -0.62 -35.57 15.78 -3.08 -0.05 -35.62 16 17 N -0.59 -30.39 5.28 -306.98 -1.62 -32.01 16 18 C -0.41 -24.20 9.68 84.04 0.81 -23.38 16 19 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 20 C -0.04 -2.24 5.50 84.92 0.47 -1.78 16 21 N -0.92 -51.66 13.68 21.66 0.30 -51.36 16 22 Si 1.13 49.58 29.92 68.60 2.05 51.63 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 C -0.09 -0.86 3.09 -9.40 -0.03 -0.89 16 27 H 0.09 0.87 8.05 -2.38 -0.02 0.85 16 28 C -0.14 -0.79 9.31 71.98 0.67 -0.11 16 29 C 0.10 0.88 6.16 86.86 0.53 1.42 16 30 H 0.11 0.79 7.90 -2.91 -0.02 0.77 16 31 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.10 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.08 0.64 7.86 -2.39 -0.02 0.62 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 0.90 7.84 -2.39 -0.02 0.89 16 37 H 0.05 1.47 7.77 -2.39 -0.02 1.46 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 41 H 0.35 11.05 8.43 -89.69 -0.76 10.30 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.39 18.17 6.73 -92.71 -0.62 17.54 16 45 H 0.26 14.12 6.78 -92.71 -0.63 13.49 16 46 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 48 H 0.06 0.35 8.07 -2.39 -0.02 0.34 16 49 H 0.11 0.35 7.47 -2.39 -0.02 0.33 16 50 H 0.09 0.58 7.99 -2.39 -0.02 0.56 16 Total: -1.00 -88.37 416.86 0.97 -87.41 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.30 Total: 34.62 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.38 Total: 17.83 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -7.10 Total: -123.01 kcal Atomic # 8 Polarization: -67.42 SS G_CDS: -1.06 Total: -68.48 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Total: -88.37 0.97 -87.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105942980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.916 kcal (2) G-P(sol) polarization free energy of solvation -88.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds