Wall clock time and date at job start Tue Mar 31 2020 23:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 120.00096 * 2 1 4 4 N 1.34784 * 119.99851 * 180.02562 * 2 1 3 5 5 C 1.47155 * 120.97788 * 174.60665 * 4 2 1 6 6 C 1.53294 * 108.37964 * 129.48847 * 5 4 2 7 7 O 1.42961 * 109.22814 * 52.30148 * 6 5 4 8 8 C 1.42965 * 114.16001 * 297.41772 * 7 6 5 9 9 H 1.09001 * 109.55806 * 302.62559 * 8 7 6 10 10 C 1.50708 * 109.50903 * 182.50542 * 8 7 6 11 11 O 1.21283 * 120.00135 * 355.25061 * 10 8 7 12 12 N 1.34771 * 119.99676 * 175.25498 * 10 8 7 13 13 C 1.47026 * 125.64631 * 179.97438 * 12 10 8 14 14 C 1.54322 * 107.40470 * 178.82925 * 13 12 10 15 15 H 1.08997 * 110.72234 * 96.24785 * 14 13 12 16 16 C 1.53000 * 110.72112 * 219.52208 * 14 13 12 17 17 N 1.46501 * 109.46996 * 293.54339 * 16 14 13 18 18 C 1.36933 * 119.99974 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00121 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00144 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99558 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47452 * 59.99969 * 22 20 18 24 24 H 1.48499 * 109.47090 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47123 * 299.99865 * 22 20 18 26 26 C 1.55411 * 102.82444 * 337.97576 * 14 13 12 27 27 H 1.09001 * 110.88663 * 277.26523 * 26 14 13 28 28 C 1.52998 * 111.06695 * 153.48805 * 26 14 13 29 29 C 1.47418 * 125.65441 * 359.95719 * 12 10 8 30 30 C 1.47147 * 120.98123 * 354.62970 * 4 2 1 31 31 H 1.09003 * 109.47371 * 274.73712 * 1 2 3 32 32 H 1.09004 * 109.47389 * 34.73614 * 1 2 3 33 33 H 1.09001 * 109.47377 * 154.73590 * 1 2 3 34 34 H 1.08997 * 109.67566 * 249.20649 * 5 4 2 35 35 H 1.08996 * 109.68588 * 9.72702 * 5 4 2 36 36 H 1.09004 * 109.51402 * 172.22385 * 6 5 4 37 37 H 1.09000 * 109.51632 * 292.36947 * 6 5 4 38 38 H 1.09008 * 109.88331 * 298.31948 * 13 12 10 39 39 H 1.08997 * 109.88180 * 59.33314 * 13 12 10 40 40 H 1.09001 * 109.47137 * 53.54584 * 16 14 13 41 41 H 1.08995 * 109.47302 * 173.53992 * 16 14 13 42 42 H 0.97003 * 119.99932 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99507 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.47736 * 306.20958 * 28 26 14 45 45 H 1.09007 * 109.47199 * 66.20825 * 28 26 14 46 46 H 1.08999 * 109.47287 * 186.20798 * 28 26 14 47 47 H 1.09005 * 110.36863 * 323.00233 * 29 12 10 48 48 H 1.08995 * 110.37011 * 85.21272 * 29 12 10 49 49 H 1.08994 * 109.68307 * 110.79300 * 30 4 2 50 50 H 1.09003 * 109.68446 * 350.23502 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6473 -1.1952 -0.1191 6 6 4.2064 -2.0760 1.0040 7 8 3.5436 -3.3425 0.9833 8 6 2.1370 -3.2708 1.2287 9 1 1.9584 -2.7914 2.1911 10 6 1.5572 -4.6619 1.2442 11 8 2.2593 -5.6144 0.9781 12 7 0.2587 -4.8473 1.5536 13 6 -0.4331 -6.1436 1.6057 14 6 -1.8918 -5.8716 2.0297 15 1 -2.5421 -5.8105 1.1571 16 6 -2.3836 -6.9486 2.9988 17 7 -2.4630 -8.2342 2.3008 18 6 -2.8822 -9.3523 2.9708 19 1 -3.1539 -9.2866 4.0140 20 6 -2.9580 -10.5704 2.3093 21 7 -2.6264 -10.6505 1.0381 22 14 -3.5291 -12.0958 3.2236 23 1 -4.9061 -11.8795 3.7358 24 1 -3.5210 -13.2586 2.3000 25 1 -2.6137 -12.3623 4.3622 26 6 -1.7934 -4.4923 2.7391 27 1 -1.4728 -4.6097 3.7742 28 6 -3.1223 -3.7381 2.6617 29 6 -0.7032 -3.7841 1.8964 30 6 1.4718 -2.4513 0.1170 31 1 -0.3634 0.0849 1.0242 32 1 -0.3634 0.8445 -0.5856 33 1 -0.3634 -0.9294 -0.4386 34 1 3.9294 -1.6107 -1.0865 35 1 4.0426 -0.1838 -0.0246 36 1 5.2760 -2.2225 0.8537 37 1 4.0363 -1.5917 1.9656 38 1 -0.4145 -6.6135 0.6223 39 1 0.0503 -6.7927 2.3358 40 1 -1.6879 -7.0309 3.8339 41 1 -3.3704 -6.6770 3.3735 42 1 -2.2186 -8.2932 1.3639 43 1 -2.6790 -11.5017 0.5759 44 1 -3.4425 -3.6716 1.6220 45 1 -3.8767 -4.2708 3.2408 46 1 -2.9946 -2.7345 3.0674 47 1 -0.2155 -3.0062 2.4839 48 1 -1.1372 -3.3589 0.9914 49 1 1.5350 -2.9932 -0.8266 50 1 0.4265 -2.2718 0.3686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106935143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:11 Heat of formation + Delta-G solvation = -89.610839 kcal Electronic energy + Delta-G solvation = -30776.110932 eV Core-core repulsion = 26611.148423 eV Total energy + Delta-G solvation = -4164.962509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11912 -40.01988 -38.75927 -37.63462 -35.32521 -34.72690 -33.17533 -32.35926 -31.45230 -30.55603 -29.18548 -27.93038 -26.67013 -25.79631 -24.78443 -23.30942 -22.70273 -21.22330 -20.23696 -19.77316 -19.47705 -17.77998 -17.49987 -17.10826 -16.92332 -16.67035 -16.04902 -15.85255 -15.58980 -15.18868 -14.76018 -14.57633 -14.19775 -14.09146 -13.96152 -13.86832 -13.67124 -13.29401 -13.13744 -12.90335 -12.86593 -12.56646 -12.54755 -12.38456 -12.20407 -12.06587 -11.97163 -11.49443 -11.31904 -11.14023 -10.90751 -10.72253 -10.65544 -10.51578 -10.46795 -10.30327 -10.05931 -9.83696 -9.68964 -9.10251 -8.89646 -8.69423 -6.95626 -5.77857 -3.07348 2.08971 2.25468 2.44868 2.54262 3.43606 3.48111 3.49235 3.51055 3.99246 4.08018 4.18537 4.33602 4.38111 4.52023 4.55417 4.56797 4.68134 4.72911 4.75588 4.83056 4.92686 4.93890 5.11122 5.15921 5.19591 5.20543 5.37185 5.38556 5.39822 5.40802 5.54506 5.60492 5.69578 5.80945 5.89210 5.95300 6.06590 6.11076 6.21013 6.31645 6.32884 6.59618 6.63921 6.77171 6.78956 7.38234 7.62655 7.67699 8.04428 8.40426 9.51781 10.07818 10.42020 11.44731 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.002472 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.001643 B =11326.428894 C =12316.856724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.517 3.483 3 O -0.543 6.543 4 N -0.617 5.617 5 C 0.073 3.927 6 C 0.047 3.953 7 O -0.347 6.347 8 C 0.067 3.933 9 H 0.088 0.912 10 C 0.533 3.467 11 O -0.507 6.507 12 N -0.615 5.615 13 C 0.117 3.883 14 C -0.099 4.099 15 H 0.087 0.913 16 C 0.165 3.835 17 N -0.733 5.733 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.099 4.099 27 H 0.088 0.912 28 C -0.140 4.140 29 C 0.096 3.904 30 C 0.081 3.919 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.025 0.975 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 24.450 -0.685 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.307 3.693 3 O -0.420 6.420 4 N -0.353 5.353 5 C -0.050 4.050 6 C -0.030 4.030 7 O -0.265 6.265 8 C 0.005 3.995 9 H 0.106 0.894 10 C 0.318 3.682 11 O -0.380 6.380 12 N -0.351 5.351 13 C -0.004 4.004 14 C -0.118 4.118 15 H 0.106 0.894 16 C 0.037 3.963 17 N -0.377 5.377 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.118 4.118 27 H 0.106 0.894 28 C -0.197 4.197 29 C -0.027 4.027 30 C -0.043 4.043 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.935 24.207 -0.784 25.193 hybrid contribution -0.365 -0.768 0.208 0.876 sum 6.570 23.439 -0.576 24.349 Atomic orbital electron populations 1.22005 0.91273 1.05202 1.05335 1.20890 0.90804 0.82613 0.74981 1.90722 1.70722 1.30766 1.49835 1.48215 1.07472 1.05943 1.73671 1.22378 0.79789 1.02728 1.00061 1.23094 0.98010 0.84178 0.97739 1.88145 1.17473 1.28477 1.92386 1.22194 0.84156 0.94278 0.98921 0.89407 1.19435 0.80779 0.89743 0.78254 1.90790 1.58215 1.42285 1.46709 1.48468 1.08173 1.09766 1.68646 1.22102 0.91673 0.83734 1.02886 1.22586 0.94912 0.94563 0.99768 0.89426 1.20623 0.97334 0.85300 0.93043 1.42340 1.80637 1.03190 1.11526 1.19147 1.36887 0.86956 0.94402 0.91244 1.24746 1.02233 0.97801 0.96026 1.69646 1.54353 1.25147 1.08859 0.86269 0.78475 0.82857 0.78571 1.21273 1.21678 1.21251 1.22414 0.94797 0.94888 0.99711 0.89352 1.21697 0.96088 0.99529 1.02423 1.22581 0.90466 0.90701 0.98955 1.22462 0.97397 0.84315 1.00126 0.88367 0.88378 0.89823 0.90179 0.87696 0.86757 0.92304 0.90846 0.90322 0.96149 0.95760 0.78215 0.93396 0.92261 0.91501 0.92613 0.90935 0.90986 0.89393 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 9.47 36.00 0.34 -0.54 16 2 C 0.52 4.57 7.81 -10.99 -0.09 4.48 16 3 O -0.54 -6.87 16.57 5.56 0.09 -6.78 16 4 N -0.62 -5.07 3.02 -172.28 -0.52 -5.59 16 5 C 0.07 0.57 6.65 -3.53 -0.02 0.55 16 6 C 0.05 0.38 6.98 37.31 0.26 0.64 16 7 O -0.35 -4.12 9.92 -55.07 -0.55 -4.66 16 8 C 0.07 0.68 2.54 -27.73 -0.07 0.61 16 9 H 0.09 0.74 7.62 -51.93 -0.40 0.34 16 10 C 0.53 7.41 7.24 -10.98 -0.08 7.33 16 11 O -0.51 -9.67 16.84 -14.28 -0.24 -9.91 16 12 N -0.61 -7.55 3.33 -170.51 -0.57 -8.12 16 13 C 0.12 1.80 6.14 -3.06 -0.02 1.78 16 14 C -0.10 -1.37 2.50 -88.65 -0.22 -1.59 16 15 H 0.09 1.22 8.02 -51.93 -0.42 0.80 16 16 C 0.16 3.01 5.59 -4.04 -0.02 2.99 16 17 N -0.73 -17.74 5.45 -59.91 -0.33 -18.07 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.10 -0.95 3.10 -88.33 -0.27 -1.22 16 27 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 28 C -0.14 -1.08 9.30 37.16 0.35 -0.73 16 29 C 0.10 0.78 4.80 -2.52 -0.01 0.76 16 30 C 0.08 0.62 5.36 -3.54 -0.02 0.60 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.28 6.28 -51.93 -0.33 -0.04 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.84 7.06 -51.93 -0.37 0.48 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 39 H 0.08 1.43 7.76 -51.93 -0.40 1.02 16 40 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.38 9.82 7.52 -40.82 -0.31 9.52 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 0.44 8.12 -51.93 -0.42 0.01 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.43 7.33 -51.93 -0.38 0.04 16 48 H 0.07 0.44 7.21 -51.93 -0.37 0.07 16 49 H 0.09 0.75 8.13 -51.93 -0.42 0.32 16 50 H 0.11 0.55 3.52 -51.93 -0.18 0.37 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -36.52 396.12 -8.75 -45.26 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.18 Total: 3.46 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.13 Total: 8.43 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.69 Total: -59.00 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.69 Total: -21.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.52 -8.75 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106935143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.347 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds