Wall clock time and date at job start Tue Mar 31 2020 23:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 120.00096 * 2 1 4 4 N 1.34784 * 119.99851 * 180.02562 * 2 1 3 5 5 C 1.47155 * 120.97788 * 174.60665 * 4 2 1 6 6 C 1.53294 * 108.37964 * 129.48847 * 5 4 2 7 7 O 1.42961 * 109.22814 * 52.30148 * 6 5 4 8 8 C 1.42965 * 114.16001 * 297.41772 * 7 6 5 9 9 H 1.09001 * 109.55806 * 302.62559 * 8 7 6 10 10 C 1.50708 * 109.50903 * 182.50542 * 8 7 6 11 11 O 1.21283 * 120.00135 * 355.25061 * 10 8 7 12 12 N 1.34771 * 119.99676 * 175.25498 * 10 8 7 13 13 C 1.47026 * 125.64631 * 179.97438 * 12 10 8 14 14 C 1.54322 * 107.40470 * 178.82925 * 13 12 10 15 15 H 1.08997 * 110.72234 * 96.24785 * 14 13 12 16 16 C 1.53000 * 110.72112 * 219.52208 * 14 13 12 17 17 N 1.46501 * 109.46996 * 293.54339 * 16 14 13 18 18 C 1.36933 * 119.99974 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00121 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00144 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99558 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47452 * 59.99969 * 22 20 18 24 24 H 1.48499 * 109.47090 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47123 * 299.99865 * 22 20 18 26 26 C 1.55411 * 102.82444 * 337.97576 * 14 13 12 27 27 H 1.09001 * 110.88663 * 277.26523 * 26 14 13 28 28 C 1.52998 * 111.06695 * 153.48805 * 26 14 13 29 29 C 1.47418 * 125.65441 * 359.95719 * 12 10 8 30 30 C 1.47147 * 120.98123 * 354.62970 * 4 2 1 31 31 H 1.09003 * 109.47371 * 274.73712 * 1 2 3 32 32 H 1.09004 * 109.47389 * 34.73614 * 1 2 3 33 33 H 1.09001 * 109.47377 * 154.73590 * 1 2 3 34 34 H 1.08997 * 109.67566 * 249.20649 * 5 4 2 35 35 H 1.08996 * 109.68588 * 9.72702 * 5 4 2 36 36 H 1.09004 * 109.51402 * 172.22385 * 6 5 4 37 37 H 1.09000 * 109.51632 * 292.36947 * 6 5 4 38 38 H 1.09008 * 109.88331 * 298.31948 * 13 12 10 39 39 H 1.08997 * 109.88180 * 59.33314 * 13 12 10 40 40 H 1.09001 * 109.47137 * 53.54584 * 16 14 13 41 41 H 1.08995 * 109.47302 * 173.53992 * 16 14 13 42 42 H 0.97003 * 119.99932 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99507 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.47736 * 306.20958 * 28 26 14 45 45 H 1.09007 * 109.47199 * 66.20825 * 28 26 14 46 46 H 1.08999 * 109.47287 * 186.20798 * 28 26 14 47 47 H 1.09005 * 110.36863 * 323.00233 * 29 12 10 48 48 H 1.08995 * 110.37011 * 85.21272 * 29 12 10 49 49 H 1.08994 * 109.68307 * 110.79300 * 30 4 2 50 50 H 1.09003 * 109.68446 * 350.23502 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6473 -1.1952 -0.1191 6 6 4.2064 -2.0760 1.0040 7 8 3.5436 -3.3425 0.9833 8 6 2.1370 -3.2708 1.2287 9 1 1.9584 -2.7914 2.1911 10 6 1.5572 -4.6619 1.2442 11 8 2.2593 -5.6144 0.9781 12 7 0.2587 -4.8473 1.5536 13 6 -0.4331 -6.1436 1.6057 14 6 -1.8918 -5.8716 2.0297 15 1 -2.5421 -5.8105 1.1571 16 6 -2.3836 -6.9486 2.9988 17 7 -2.4630 -8.2342 2.3008 18 6 -2.8822 -9.3523 2.9708 19 1 -3.1539 -9.2866 4.0140 20 6 -2.9580 -10.5704 2.3093 21 7 -2.6264 -10.6505 1.0381 22 14 -3.5291 -12.0958 3.2236 23 1 -4.9061 -11.8795 3.7358 24 1 -3.5210 -13.2586 2.3000 25 1 -2.6137 -12.3623 4.3622 26 6 -1.7934 -4.4923 2.7391 27 1 -1.4728 -4.6097 3.7742 28 6 -3.1223 -3.7381 2.6617 29 6 -0.7032 -3.7841 1.8964 30 6 1.4718 -2.4513 0.1170 31 1 -0.3634 0.0849 1.0242 32 1 -0.3634 0.8445 -0.5856 33 1 -0.3634 -0.9294 -0.4386 34 1 3.9294 -1.6107 -1.0865 35 1 4.0426 -0.1838 -0.0246 36 1 5.2760 -2.2225 0.8537 37 1 4.0363 -1.5917 1.9656 38 1 -0.4145 -6.6135 0.6223 39 1 0.0503 -6.7927 2.3358 40 1 -1.6879 -7.0309 3.8339 41 1 -3.3704 -6.6770 3.3735 42 1 -2.2186 -8.2932 1.3639 43 1 -2.6790 -11.5017 0.5759 44 1 -3.4425 -3.6716 1.6220 45 1 -3.8767 -4.2708 3.2408 46 1 -2.9946 -2.7345 3.0674 47 1 -0.2155 -3.0062 2.4839 48 1 -1.1372 -3.3589 0.9914 49 1 1.5350 -2.9932 -0.8266 50 1 0.4265 -2.2718 0.3686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106935143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:10 Heat of formation + Delta-G solvation = -116.230595 kcal Electronic energy + Delta-G solvation = -30777.265251 eV Core-core repulsion = 26611.148423 eV Total energy + Delta-G solvation = -4166.116828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93556 -40.90618 -39.61834 -38.69873 -36.50912 -35.97913 -34.39907 -33.08232 -33.03036 -31.25666 -30.43667 -28.67411 -27.44075 -27.06885 -25.83249 -24.79657 -23.54948 -22.35078 -21.23118 -20.66216 -20.28388 -19.17316 -18.47555 -18.24679 -17.78209 -17.47243 -16.83254 -16.72138 -16.60676 -16.47445 -16.00594 -15.51371 -15.35718 -15.21164 -15.01930 -14.84367 -14.65780 -14.53466 -14.03134 -13.84779 -13.82232 -13.42988 -13.29025 -13.23276 -13.02355 -12.94550 -12.84648 -12.72646 -12.68436 -12.42869 -12.18533 -12.01437 -11.93066 -11.83682 -11.50576 -11.43556 -11.30234 -11.04916 -10.92975 -10.85552 -9.82607 -9.74293 -8.98954 -7.94504 -5.23075 1.31083 1.47071 1.47806 1.50255 1.54862 1.56156 1.78518 2.56319 2.75438 3.25565 3.38795 3.39798 3.47969 3.55929 3.64411 3.75710 3.80766 3.95686 4.00646 4.10125 4.19564 4.29438 4.33721 4.44213 4.47991 4.50025 4.53823 4.59577 4.62555 4.68022 4.69563 4.79580 4.83644 4.91036 4.91654 5.06586 5.08405 5.14559 5.20998 5.23742 5.31004 5.43835 5.50016 5.60859 5.87447 6.19918 6.27665 6.40484 6.98945 7.00808 7.34149 8.10849 8.32164 9.28821 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.002472 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.001643 B =11326.428894 C =12316.856724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.588 6.588 4 N -0.616 5.616 5 C 0.071 3.929 6 C 0.049 3.951 7 O -0.382 6.382 8 C 0.074 3.926 9 H 0.115 0.885 10 C 0.528 3.472 11 O -0.573 6.573 12 N -0.608 5.608 13 C 0.123 3.877 14 C -0.089 4.089 15 H 0.091 0.909 16 C 0.163 3.837 17 N -0.747 5.747 18 C -0.245 4.245 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.281 1.281 26 C -0.088 4.088 27 H 0.087 0.913 28 C -0.136 4.136 29 C 0.090 3.910 30 C 0.089 3.911 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.040 0.960 40 H 0.014 0.986 41 H 0.035 0.965 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.079 0.921 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 27.335 0.467 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.305 3.695 3 O -0.469 6.469 4 N -0.351 5.351 5 C -0.051 4.051 6 C -0.028 4.028 7 O -0.300 6.300 8 C 0.012 3.988 9 H 0.133 0.867 10 C 0.315 3.685 11 O -0.452 6.452 12 N -0.341 5.341 13 C 0.000 4.000 14 C -0.109 4.109 15 H 0.109 0.891 16 C 0.037 3.963 17 N -0.389 5.389 18 C -0.377 4.377 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.207 1.207 26 C -0.107 4.107 27 H 0.105 0.895 28 C -0.193 4.193 29 C -0.031 4.031 30 C -0.034 4.034 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.053 0.947 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.129 0.871 48 H 0.125 0.875 49 H 0.097 0.903 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.314 27.156 0.417 27.674 hybrid contribution 0.167 -1.630 -0.102 1.642 sum 5.481 25.526 0.315 26.109 Atomic orbital electron populations 1.22094 0.87828 1.06412 1.07132 1.21660 0.92413 0.81770 0.73657 1.90708 1.71956 1.32245 1.51969 1.48285 1.07517 1.06107 1.73142 1.22368 0.80181 1.02483 1.00097 1.23242 0.98526 0.82821 0.98183 1.88112 1.18496 1.30725 1.92702 1.22206 0.83714 0.91712 1.01166 0.86735 1.20226 0.80641 0.90773 0.76836 1.90756 1.59957 1.44660 1.49795 1.48480 1.08374 1.09684 1.67609 1.21781 0.92940 0.85071 1.00208 1.22438 0.93167 0.95883 0.99363 0.89078 1.20793 0.97691 0.84237 0.93589 1.42591 1.80322 1.04748 1.11268 1.19593 1.35221 0.88064 0.94784 0.90562 1.25569 1.03511 1.00888 0.96911 1.69811 1.56460 1.25340 1.10440 0.85234 0.78475 0.78980 0.77218 1.19971 1.22354 1.20706 1.22410 0.96823 0.92137 0.99338 0.89502 1.21695 0.93994 1.00577 1.03060 1.23015 0.89214 0.89946 1.00886 1.22453 0.98631 0.83521 0.98842 0.85928 0.88220 0.87762 0.90263 0.87921 0.85379 0.91318 0.93571 0.94156 0.96791 0.94695 0.79498 0.94077 0.91427 0.92889 0.89426 0.87055 0.87526 0.90282 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 9.47 71.23 0.67 -0.24 16 2 C 0.51 7.59 7.81 87.65 0.68 8.28 16 3 O -0.59 -13.97 16.57 -3.03 -0.05 -14.02 16 4 N -0.62 -8.51 3.02 -817.37 -2.47 -10.98 16 5 C 0.07 1.03 6.65 86.35 0.57 1.61 16 6 C 0.05 0.71 6.98 72.08 0.50 1.21 16 7 O -0.38 -8.76 9.92 -130.01 -1.29 -10.05 16 8 C 0.07 1.35 2.54 29.95 0.08 1.42 16 9 H 0.12 1.47 7.62 -2.39 -0.02 1.45 16 10 C 0.53 14.47 7.24 87.66 0.63 15.10 16 11 O -0.57 -23.01 16.84 15.93 0.27 -22.74 16 12 N -0.61 -14.12 3.33 -811.76 -2.70 -16.82 16 13 C 0.12 3.90 6.14 86.73 0.53 4.43 16 14 C -0.09 -2.38 2.50 -9.52 -0.02 -2.41 16 15 H 0.09 2.41 8.02 -2.39 -0.02 2.40 16 16 C 0.16 5.96 5.59 86.38 0.48 6.44 16 17 N -0.75 -37.03 5.45 -343.45 -1.87 -38.90 16 18 C -0.24 -13.57 9.99 84.04 0.84 -12.73 16 19 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 22 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 C -0.09 -1.38 3.10 -9.31 -0.03 -1.41 16 27 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 28 C -0.14 -1.46 9.30 71.98 0.67 -0.79 16 29 C 0.09 1.04 4.80 86.86 0.42 1.46 16 30 C 0.09 1.09 5.36 86.36 0.46 1.55 16 31 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 0.11 6.28 -2.39 -0.01 0.10 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.56 7.06 -2.39 -0.02 1.55 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.04 1.57 7.76 -2.39 -0.02 1.55 16 40 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 41 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.37 19.88 7.52 -92.71 -0.70 19.18 16 43 H 0.25 15.09 8.31 -92.70 -0.77 14.31 16 44 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 45 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.11 0.56 7.33 -2.38 -0.02 0.54 16 48 H 0.11 0.61 7.21 -2.39 -0.02 0.59 16 49 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 50 H 0.14 0.70 3.52 -2.39 -0.01 0.69 16 Total: -1.00 -85.70 396.12 1.41 -84.29 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.25 Total: 20.54 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 6.97 Total: 19.99 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -6.76 Total: -126.34 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.07 Total: -46.81 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -85.70 1.41 -84.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106935143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.941 kcal (2) G-P(sol) polarization free energy of solvation -85.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds