Wall clock time and date at job start Tue Mar 31 2020 23:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00527 * 2 1 4 4 N 1.34776 * 119.99700 * 179.97438 * 2 1 3 5 5 C 1.47149 * 120.98508 * 5.58653 * 4 2 1 6 6 C 1.53293 * 108.38896 * 129.48493 * 5 4 2 7 7 O 1.42959 * 109.22370 * 52.29894 * 6 5 4 8 8 C 1.42964 * 114.16707 * 297.42250 * 7 6 5 9 9 C 1.47155 * 120.98028 * 185.60317 * 4 2 1 10 10 H 1.08991 * 109.71516 * 110.77596 * 9 4 2 11 11 C 1.50700 * 109.68480 * 350.23744 * 9 4 2 12 12 O 1.21279 * 119.99949 * 297.72084 * 11 9 4 13 13 N 1.34783 * 120.00068 * 117.71360 * 11 9 4 14 14 C 1.48143 * 127.83850 * 174.92348 * 13 11 9 15 15 C 1.54390 * 104.61420 * 219.60783 * 14 13 11 16 16 H 1.09002 * 110.43184 * 95.05022 * 15 14 13 17 17 C 1.53000 * 110.34009 * 217.26066 * 15 14 13 18 18 N 1.46504 * 109.47200 * 290.53655 * 17 15 14 19 19 C 1.36933 * 120.00112 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99770 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99925 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99964 * 23 21 19 25 25 H 1.48501 * 109.46956 * 209.99918 * 23 21 19 26 26 H 1.48502 * 109.47060 * 329.99493 * 23 21 19 27 27 C 1.54286 * 104.96185 * 336.13253 * 15 14 13 28 28 H 1.08996 * 110.33893 * 241.13377 * 27 15 14 29 29 C 1.52996 * 110.34242 * 118.97686 * 27 15 14 30 30 C 1.48142 * 127.83581 * 354.94573 * 13 11 9 31 31 H 1.08995 * 109.47747 * 185.49925 * 1 2 3 32 32 H 1.08997 * 109.47645 * 305.50321 * 1 2 3 33 33 H 1.09004 * 109.47097 * 65.50167 * 1 2 3 34 34 H 1.09002 * 109.67993 * 9.75803 * 5 4 2 35 35 H 1.09008 * 109.71205 * 249.22615 * 5 4 2 36 36 H 1.09003 * 109.50923 * 292.37361 * 6 5 4 37 37 H 1.09001 * 109.55518 * 172.25482 * 6 5 4 38 38 H 1.08998 * 109.51160 * 302.65654 * 8 7 6 39 39 H 1.09004 * 109.55477 * 182.52805 * 8 7 6 40 40 H 1.08994 * 110.40768 * 100.82175 * 14 13 11 41 41 H 1.08999 * 110.40656 * 338.38908 * 14 13 11 42 42 H 1.09001 * 109.46779 * 170.54056 * 17 15 14 43 43 H 1.08996 * 109.47199 * 50.54041 * 17 15 14 44 44 H 0.97001 * 119.99675 * 0.02562 * 18 17 15 45 45 H 0.97002 * 120.00200 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.47116 * 60.00019 * 29 27 15 47 47 H 1.09004 * 109.47122 * 179.97438 * 29 27 15 48 48 H 1.09000 * 109.47193 * 300.00058 * 29 27 15 49 49 H 1.09009 * 110.40809 * 21.61471 * 30 13 11 50 50 H 1.08991 * 110.50968 * 259.22875 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4722 -2.4511 -0.1217 6 6 2.1408 -3.2686 -1.2327 7 8 3.5466 -3.3407 -0.9831 8 6 4.2096 -2.0741 -0.9993 9 6 3.6469 -1.1954 0.1237 10 1 3.9266 -1.6123 1.0911 11 6 4.1940 0.2029 -0.0036 12 8 4.0357 0.8247 -1.0328 13 7 4.8591 0.7628 1.0264 14 6 5.5530 2.0713 1.0563 15 6 6.8398 1.8113 1.8689 16 1 7.6733 1.5918 1.2017 17 6 7.1673 3.0203 2.7475 18 7 7.5866 4.1400 1.9009 19 6 7.9323 5.3366 2.4699 20 1 7.8954 5.4551 3.5428 21 6 8.3291 6.3977 1.6676 22 7 8.3736 6.2535 0.3602 23 14 8.8014 8.0298 2.4439 24 1 10.2563 8.0341 2.7410 25 1 8.4849 9.1350 1.5039 26 1 8.0383 8.2179 3.7039 27 6 6.5163 0.5834 2.7451 28 1 6.5907 0.8415 3.8015 29 6 7.4632 -0.5715 2.4128 30 6 5.0623 0.2089 2.3853 31 1 -0.3634 -1.0228 0.0985 32 1 -0.3634 0.5968 0.8365 33 1 -0.3633 0.4262 -0.9352 34 1 0.4277 -2.2711 -0.3762 35 1 1.5317 -2.9951 0.8210 36 1 1.9661 -2.7868 -2.1947 37 1 1.7217 -4.2747 -1.2480 38 1 4.0424 -1.5880 -1.9604 39 1 5.2789 -2.2201 -0.8462 40 1 4.9341 2.8184 1.5531 41 1 5.8007 2.3933 0.0449 42 1 7.9733 2.7625 3.4345 43 1 6.2826 3.3064 3.3164 44 1 7.6194 4.0337 0.9373 45 1 8.6513 6.9949 -0.2004 46 1 8.4919 -0.2630 2.5990 47 1 7.2228 -1.4304 3.0394 48 1 7.3499 -0.8438 1.3634 49 1 4.9400 -0.8742 2.3765 50 1 4.3670 0.6635 3.0909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107002777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:18 Heat of formation + Delta-G solvation = -73.058589 kcal Electronic energy + Delta-G solvation = -31438.372948 eV Core-core repulsion = 27274.128199 eV Total energy + Delta-G solvation = -4164.244749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22804 -39.44466 -38.55827 -37.48587 -35.14641 -34.55225 -32.75262 -32.19748 -31.31550 -30.17066 -29.06850 -27.90986 -26.45563 -25.86561 -24.48445 -23.18877 -22.57435 -21.26677 -20.38242 -19.66546 -18.75202 -17.73203 -17.25748 -16.91126 -16.84748 -16.14588 -15.77580 -15.63514 -15.42900 -15.20149 -14.69361 -14.48385 -14.15002 -14.02170 -13.92834 -13.55141 -13.38110 -13.15390 -12.99723 -12.87061 -12.63460 -12.52730 -12.34632 -12.13094 -11.96433 -11.83743 -11.53086 -11.37824 -11.22456 -11.10730 -10.80936 -10.65992 -10.52224 -10.43243 -10.23807 -9.94115 -9.74560 -9.61225 -9.45130 -8.97411 -8.82185 -8.37178 -6.86384 -5.69800 -2.98954 2.20698 2.39630 2.97442 3.14207 3.41929 3.47961 3.52530 3.54885 4.15748 4.23421 4.40308 4.51142 4.55163 4.60680 4.62251 4.67575 4.70967 4.89687 4.96679 4.97640 5.00099 5.11039 5.18809 5.28401 5.37641 5.43172 5.50417 5.51601 5.57198 5.62896 5.64398 5.79646 5.86522 5.93969 6.08499 6.15541 6.18758 6.26113 6.37822 6.49176 6.57684 6.64754 6.77585 6.91941 6.96996 7.75073 7.81585 7.91349 8.47723 8.48543 9.59493 10.17463 10.51855 11.52925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002745 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.562277 B =10197.667415 C =10919.848569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.501 3.499 3 O -0.493 6.493 4 N -0.613 5.613 5 C 0.073 3.927 6 C 0.043 3.957 7 O -0.373 6.373 8 C 0.062 3.938 9 C 0.094 3.906 10 H 0.096 0.904 11 C 0.555 3.445 12 O -0.518 6.518 13 N -0.618 5.618 14 C 0.125 3.875 15 C -0.104 4.104 16 H 0.082 0.918 17 C 0.164 3.836 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.101 4.101 28 H 0.088 0.912 29 C -0.140 4.140 30 C 0.105 3.895 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -25.944 1.414 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.289 3.711 3 O -0.366 6.366 4 N -0.352 5.352 5 C -0.050 4.050 6 C -0.034 4.034 7 O -0.291 6.291 8 C -0.016 4.016 9 C -0.013 4.013 10 H 0.114 0.886 11 C 0.342 3.658 12 O -0.392 6.392 13 N -0.353 5.353 14 C 0.003 3.997 15 C -0.123 4.123 16 H 0.100 0.900 17 C 0.036 3.964 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.121 4.121 28 H 0.106 0.894 29 C -0.198 4.198 30 C -0.019 4.019 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.790 -25.077 0.894 29.647 hybrid contribution 0.047 1.079 0.194 1.097 sum -15.743 -23.998 1.089 28.721 Atomic orbital electron populations 1.21969 0.91258 1.04217 1.05631 1.21005 0.90839 0.83130 0.76117 1.90931 1.68447 1.30457 1.46757 1.48128 1.05092 1.06682 1.75278 1.22579 0.97588 0.84236 1.00601 1.23041 0.81936 1.01341 0.97132 1.87994 1.20245 1.28394 1.92432 1.22850 0.97513 0.83711 0.97485 1.21906 0.81745 0.96072 1.01608 0.88644 1.19002 0.77475 0.86160 0.83160 1.90719 1.56430 1.62488 1.29601 1.48808 1.54178 1.21048 1.11248 1.22322 0.91805 0.83831 1.01723 1.22410 0.97530 0.95020 0.97381 0.89964 1.20716 0.96609 0.86469 0.92615 1.42378 1.80617 1.08924 1.05787 1.19206 1.37094 0.88996 0.91821 0.91224 1.24749 1.02525 0.98316 0.95399 1.69663 1.54100 1.31674 1.02558 0.86194 0.78164 0.83886 0.77968 1.21774 1.21801 1.20805 1.22110 0.93656 0.95658 1.00671 0.89366 1.21827 0.99587 0.97124 1.01223 1.22480 0.96889 0.98410 0.84105 0.90216 0.88523 0.88598 0.87875 0.90150 0.92210 0.87240 0.91004 0.87085 0.90770 0.90032 0.96033 0.96196 0.78200 0.93508 0.92002 0.92852 0.92833 0.90987 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.00 36.00 0.36 -0.89 16 2 C 0.50 6.25 7.66 -10.99 -0.08 6.17 16 3 O -0.49 -9.04 12.73 -19.23 -0.24 -9.28 16 4 N -0.61 -6.28 3.02 -166.06 -0.50 -6.79 16 5 C 0.07 0.41 6.41 -3.54 -0.02 0.38 16 6 C 0.04 0.26 6.98 37.31 0.26 0.52 16 7 O -0.37 -3.39 10.74 -35.23 -0.38 -3.77 16 8 C 0.06 0.65 6.24 37.31 0.23 0.88 16 9 C 0.09 1.09 3.36 -68.57 -0.23 0.86 16 10 H 0.10 0.95 5.95 -51.93 -0.31 0.64 16 11 C 0.55 9.08 4.56 -10.98 -0.05 9.03 16 12 O -0.52 -10.82 14.82 -19.23 -0.29 -11.11 16 13 N -0.62 -9.70 3.32 -169.31 -0.56 -10.26 16 14 C 0.12 2.30 6.39 -2.41 -0.02 2.28 16 15 C -0.10 -1.72 2.75 -89.22 -0.24 -1.97 16 16 H 0.08 1.44 7.71 -51.93 -0.40 1.04 16 17 C 0.16 3.31 5.38 -4.04 -0.02 3.29 16 18 N -0.73 -19.07 5.48 -59.91 -0.33 -19.39 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 23 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.10 -1.25 3.30 -89.22 -0.29 -1.54 16 28 H 0.09 1.02 7.71 -51.93 -0.40 0.62 16 29 C -0.14 -1.48 8.91 37.16 0.33 -1.15 16 30 C 0.10 1.25 6.45 -2.41 -0.02 1.23 16 31 H 0.08 0.31 5.39 -51.93 -0.28 0.03 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.31 5.42 -51.93 -0.28 0.03 16 35 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.50 7.75 -51.93 -0.40 1.09 16 41 H 0.08 1.72 7.93 -51.93 -0.41 1.31 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.41 7.98 -51.93 -0.41 0.00 16 44 H 0.38 10.63 7.61 -40.82 -0.31 10.32 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.67 6.00 -51.92 -0.31 0.36 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -38.66 390.93 -8.87 -47.53 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.13 Total: 6.05 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -0.04 Total: 11.55 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.67 Total: -64.87 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.91 Total: -24.16 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.66 -8.87 -47.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107002777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.529 kcal (2) G-P(sol) polarization free energy of solvation -38.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds