Wall clock time and date at job start Tue Mar 31 2020 23:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00527 * 2 1 4 4 N 1.34776 * 119.99700 * 179.97438 * 2 1 3 5 5 C 1.47149 * 120.98508 * 5.58653 * 4 2 1 6 6 C 1.53293 * 108.38896 * 129.48493 * 5 4 2 7 7 O 1.42959 * 109.22370 * 52.29894 * 6 5 4 8 8 C 1.42964 * 114.16707 * 297.42250 * 7 6 5 9 9 C 1.47155 * 120.98028 * 185.60317 * 4 2 1 10 10 H 1.08991 * 109.71516 * 110.77596 * 9 4 2 11 11 C 1.50700 * 109.68480 * 350.23744 * 9 4 2 12 12 O 1.21279 * 119.99949 * 297.72084 * 11 9 4 13 13 N 1.34783 * 120.00068 * 117.71360 * 11 9 4 14 14 C 1.48143 * 127.83850 * 174.92348 * 13 11 9 15 15 C 1.54390 * 104.61420 * 219.60783 * 14 13 11 16 16 H 1.09002 * 110.43184 * 95.05022 * 15 14 13 17 17 C 1.53000 * 110.34009 * 217.26066 * 15 14 13 18 18 N 1.46504 * 109.47200 * 290.53655 * 17 15 14 19 19 C 1.36933 * 120.00112 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99770 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99925 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99964 * 23 21 19 25 25 H 1.48501 * 109.46956 * 209.99918 * 23 21 19 26 26 H 1.48502 * 109.47060 * 329.99493 * 23 21 19 27 27 C 1.54286 * 104.96185 * 336.13253 * 15 14 13 28 28 H 1.08996 * 110.33893 * 241.13377 * 27 15 14 29 29 C 1.52996 * 110.34242 * 118.97686 * 27 15 14 30 30 C 1.48142 * 127.83581 * 354.94573 * 13 11 9 31 31 H 1.08995 * 109.47747 * 185.49925 * 1 2 3 32 32 H 1.08997 * 109.47645 * 305.50321 * 1 2 3 33 33 H 1.09004 * 109.47097 * 65.50167 * 1 2 3 34 34 H 1.09002 * 109.67993 * 9.75803 * 5 4 2 35 35 H 1.09008 * 109.71205 * 249.22615 * 5 4 2 36 36 H 1.09003 * 109.50923 * 292.37361 * 6 5 4 37 37 H 1.09001 * 109.55518 * 172.25482 * 6 5 4 38 38 H 1.08998 * 109.51160 * 302.65654 * 8 7 6 39 39 H 1.09004 * 109.55477 * 182.52805 * 8 7 6 40 40 H 1.08994 * 110.40768 * 100.82175 * 14 13 11 41 41 H 1.08999 * 110.40656 * 338.38908 * 14 13 11 42 42 H 1.09001 * 109.46779 * 170.54056 * 17 15 14 43 43 H 1.08996 * 109.47199 * 50.54041 * 17 15 14 44 44 H 0.97001 * 119.99675 * 0.02562 * 18 17 15 45 45 H 0.97002 * 120.00200 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.47116 * 60.00019 * 29 27 15 47 47 H 1.09004 * 109.47122 * 179.97438 * 29 27 15 48 48 H 1.09000 * 109.47193 * 300.00058 * 29 27 15 49 49 H 1.09009 * 110.40809 * 21.61471 * 30 13 11 50 50 H 1.08991 * 110.50968 * 259.22875 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4722 -2.4511 -0.1217 6 6 2.1408 -3.2686 -1.2327 7 8 3.5466 -3.3407 -0.9831 8 6 4.2096 -2.0741 -0.9993 9 6 3.6469 -1.1954 0.1237 10 1 3.9266 -1.6123 1.0911 11 6 4.1940 0.2029 -0.0036 12 8 4.0357 0.8247 -1.0328 13 7 4.8591 0.7628 1.0264 14 6 5.5530 2.0713 1.0563 15 6 6.8398 1.8113 1.8689 16 1 7.6733 1.5918 1.2017 17 6 7.1673 3.0203 2.7475 18 7 7.5866 4.1400 1.9009 19 6 7.9323 5.3366 2.4699 20 1 7.8954 5.4551 3.5428 21 6 8.3291 6.3977 1.6676 22 7 8.3736 6.2535 0.3602 23 14 8.8014 8.0298 2.4439 24 1 10.2563 8.0341 2.7410 25 1 8.4849 9.1350 1.5039 26 1 8.0383 8.2179 3.7039 27 6 6.5163 0.5834 2.7451 28 1 6.5907 0.8415 3.8015 29 6 7.4632 -0.5715 2.4128 30 6 5.0623 0.2089 2.3853 31 1 -0.3634 -1.0228 0.0985 32 1 -0.3634 0.5968 0.8365 33 1 -0.3633 0.4262 -0.9352 34 1 0.4277 -2.2711 -0.3762 35 1 1.5317 -2.9951 0.8210 36 1 1.9661 -2.7868 -2.1947 37 1 1.7217 -4.2747 -1.2480 38 1 4.0424 -1.5880 -1.9604 39 1 5.2789 -2.2201 -0.8462 40 1 4.9341 2.8184 1.5531 41 1 5.8007 2.3933 0.0449 42 1 7.9733 2.7625 3.4345 43 1 6.2826 3.3064 3.3164 44 1 7.6194 4.0337 0.9373 45 1 8.6513 6.9949 -0.2004 46 1 8.4919 -0.2630 2.5990 47 1 7.2228 -1.4304 3.0394 48 1 7.3499 -0.8438 1.3634 49 1 4.9400 -0.8742 2.3765 50 1 4.3670 0.6635 3.0909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107002777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:17 Heat of formation + Delta-G solvation = -102.095104 kcal Electronic energy + Delta-G solvation = -31439.632066 eV Core-core repulsion = 27274.128199 eV Total energy + Delta-G solvation = -4165.503867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18848 -40.60317 -39.38551 -38.78502 -36.45458 -35.97643 -34.14907 -33.12179 -32.99242 -30.81968 -30.68099 -28.67850 -27.44895 -27.36353 -25.69746 -24.79100 -23.32847 -22.72345 -21.34438 -21.00459 -19.79078 -19.14107 -18.60097 -18.07968 -17.76604 -17.04327 -16.87050 -16.60893 -16.49169 -16.30348 -16.03780 -15.80167 -15.34540 -15.21350 -15.13402 -14.80906 -14.77979 -14.35248 -14.13784 -14.07601 -13.75792 -13.34966 -13.28876 -13.17840 -13.04552 -12.98058 -12.83502 -12.68875 -12.46111 -12.43530 -12.15800 -12.01809 -11.99011 -11.77199 -11.58789 -11.43027 -11.40128 -10.97135 -10.86853 -10.58430 -9.84214 -9.61853 -9.02778 -7.96350 -5.26368 1.29944 1.44385 1.47570 1.49243 1.55873 1.85013 2.08656 2.54277 2.72692 3.26294 3.37108 3.46817 3.53990 3.63673 3.68542 3.78830 3.85599 3.94910 4.03024 4.16692 4.18667 4.22606 4.31236 4.36027 4.48847 4.50117 4.52741 4.55925 4.57125 4.63628 4.73882 4.79005 4.82232 4.87596 4.89288 5.01799 5.04310 5.06358 5.18889 5.22803 5.26950 5.31130 5.47094 5.53570 5.93136 6.19889 6.24784 6.60586 7.00913 7.28076 7.30348 8.06441 8.28769 9.27555 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002745 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.562277 B =10197.667415 C =10919.848569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.487 3.513 3 O -0.565 6.565 4 N -0.611 5.611 5 C 0.069 3.931 6 C 0.034 3.966 7 O -0.376 6.376 8 C 0.071 3.929 9 C 0.100 3.900 10 H 0.124 0.876 11 C 0.548 3.452 12 O -0.576 6.576 13 N -0.620 5.620 14 C 0.131 3.869 15 C -0.091 4.091 16 H 0.070 0.930 17 C 0.164 3.836 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.267 1.267 27 C -0.091 4.091 28 H 0.106 0.894 29 C -0.136 4.136 30 C 0.105 3.895 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.147 0.853 38 H 0.044 0.956 39 H 0.121 0.879 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.022 0.978 44 H 0.370 0.630 45 H 0.250 0.750 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.111 0.889 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 -29.520 4.066 34.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.278 3.722 3 O -0.443 6.443 4 N -0.349 5.349 5 C -0.051 4.051 6 C -0.042 4.042 7 O -0.294 6.294 8 C -0.008 4.008 9 C -0.007 4.007 10 H 0.141 0.859 11 C 0.338 3.662 12 O -0.455 6.455 13 N -0.354 5.354 14 C 0.008 3.992 15 C -0.111 4.111 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.391 5.391 19 C -0.376 4.376 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.192 1.192 27 C -0.110 4.110 28 H 0.124 0.876 29 C -0.193 4.193 30 C -0.017 4.017 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.164 0.836 38 H 0.062 0.938 39 H 0.139 0.861 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.129 0.871 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.271 -28.765 3.620 33.746 hybrid contribution 0.412 2.100 -0.646 2.236 sum -16.859 -26.664 2.974 31.687 Atomic orbital electron populations 1.21990 0.87174 1.07035 1.05801 1.22002 0.92897 0.82636 0.74705 1.90907 1.70085 1.33072 1.50196 1.48365 1.04537 1.08033 1.73926 1.22979 0.98556 0.81839 1.01735 1.23367 0.80450 1.03507 0.96900 1.87999 1.22032 1.26993 1.92358 1.22683 0.98376 0.84055 0.95667 1.21878 0.82954 0.92542 1.03345 0.85900 1.19905 0.76371 0.87749 0.82168 1.90676 1.58388 1.64479 1.31976 1.48912 1.53636 1.19865 1.12988 1.21960 0.92800 0.85314 0.99167 1.22239 0.95826 0.95822 0.97206 0.91176 1.20895 0.96640 0.86080 0.92633 1.42652 1.80739 1.10002 1.05731 1.19677 1.35616 0.89948 0.92371 0.90201 1.25665 1.03492 1.02228 0.95901 1.69852 1.55938 1.32497 1.04128 0.85076 0.78053 0.78947 0.77303 1.21009 1.22482 1.19178 1.22117 0.94379 0.94038 1.00478 0.87580 1.21810 0.98647 0.97275 1.01582 1.22721 0.96544 1.00620 0.81779 0.85994 0.88233 0.88473 0.84815 0.87596 0.93186 0.83560 0.93766 0.86106 0.93420 0.94371 0.94652 0.96019 0.79847 0.94099 0.92531 0.89393 0.93480 0.87093 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.00 71.23 0.71 -1.30 16 2 C 0.49 11.97 7.66 87.66 0.67 12.64 16 3 O -0.56 -21.88 12.73 20.67 0.26 -21.61 16 4 N -0.61 -11.39 3.02 -797.68 -2.41 -13.80 16 5 C 0.07 0.48 6.41 86.35 0.55 1.03 16 6 C 0.03 0.30 6.98 72.08 0.50 0.80 16 7 O -0.38 -5.82 10.74 -148.98 -1.60 -7.42 16 8 C 0.07 1.42 6.24 72.08 0.45 1.87 16 9 C 0.10 2.21 3.36 44.22 0.15 2.36 16 10 H 0.12 2.00 5.95 -2.39 -0.01 1.99 16 11 C 0.55 18.71 4.56 87.66 0.40 19.11 16 12 O -0.58 -26.25 14.82 20.67 0.31 -25.94 16 13 N -0.62 -20.10 3.32 -807.97 -2.68 -22.78 16 14 C 0.13 5.23 6.39 86.54 0.55 5.79 16 15 C -0.09 -3.12 2.75 -9.89 -0.03 -3.14 16 16 H 0.07 2.58 7.71 -2.39 -0.02 2.56 16 17 C 0.16 6.73 5.38 86.38 0.46 7.19 16 18 N -0.75 -40.50 5.48 -343.45 -1.88 -42.38 16 19 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 22 N -0.97 -63.38 13.06 21.65 0.28 -63.10 16 23 Si 0.98 48.20 29.55 68.60 2.03 50.23 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 27 C -0.09 -2.06 3.30 -9.89 -0.03 -2.09 16 28 H 0.11 2.11 7.71 -2.39 -0.02 2.09 16 29 C -0.14 -2.47 8.91 71.98 0.64 -1.83 16 30 C 0.10 2.30 6.45 86.54 0.56 2.85 16 31 H 0.12 0.39 5.39 -2.39 -0.01 0.37 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.13 0.10 5.42 -2.39 -0.01 0.08 16 35 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.04 1.13 7.86 -2.39 -0.02 1.11 16 39 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 2.11 7.75 -2.39 -0.02 2.09 16 41 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.02 0.90 7.98 -2.39 -0.02 0.88 16 44 H 0.37 21.81 7.61 -92.71 -0.71 21.11 16 45 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.11 1.59 6.00 -2.38 -0.01 1.57 16 50 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -92.98 390.93 1.45 -91.53 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.24 Total: 27.88 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 6.90 Total: 27.40 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -6.69 Total: -142.05 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -1.03 Total: -54.98 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -92.98 1.45 -91.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107002777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.567 kcal (2) G-P(sol) polarization free energy of solvation -92.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds