Wall clock time and date at job start Tue Mar 31 2020 23:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.66981 * 2 1 4 4 C 1.53064 * 109.66907 * 120.49274 * 2 1 3 5 5 C 1.50178 * 109.89062 * 168.67049 * 4 2 1 6 6 O 1.21286 * 118.24886 * 162.39930 * 5 4 2 7 7 N 1.33356 * 123.50831 * 342.41831 * 5 4 2 8 8 C 1.45758 * 124.10397 * 2.20447 * 7 5 4 9 9 H 1.08999 * 109.30265 * 101.05029 * 8 7 5 10 10 C 1.50701 * 109.29470 * 220.63110 * 8 7 5 11 11 O 1.21277 * 120.00341 * 20.00471 * 10 8 7 12 12 N 1.34784 * 119.99570 * 199.99692 * 10 8 7 13 13 C 1.46498 * 119.99647 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46741 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.51612 * 305.10347 * 14 13 12 16 16 C 1.53297 * 109.51068 * 185.00214 * 14 13 12 17 17 N 1.47152 * 108.38115 * 187.77720 * 16 14 13 18 18 C 1.36945 * 120.98116 * 230.55272 * 17 16 14 19 19 H 1.07995 * 119.99899 * 153.28764 * 18 17 16 20 20 C 1.38818 * 119.99725 * 333.29196 * 18 17 16 21 21 N 1.31612 * 120.00017 * 343.56516 * 20 18 17 22 22 Si 1.86797 * 119.99754 * 163.56629 * 20 18 17 23 23 H 1.48503 * 109.46854 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47394 * 209.99750 * 22 20 18 25 25 H 1.48499 * 109.47265 * 329.99932 * 22 20 18 26 26 C 1.47150 * 118.04139 * 50.53510 * 17 16 14 27 27 C 1.53295 * 108.38127 * 309.46602 * 26 17 16 28 28 O 1.42958 * 109.22430 * 52.30161 * 27 26 17 29 29 C 1.52974 * 110.51653 * 340.96118 * 8 7 5 30 30 H 1.08994 * 109.47736 * 300.00313 * 1 2 3 31 31 H 1.09001 * 109.46616 * 60.00386 * 1 2 3 32 32 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.40576 * 288.79911 * 4 2 1 34 34 H 1.09001 * 109.40261 * 48.63061 * 4 2 1 35 35 H 0.96998 * 117.94865 * 182.21666 * 7 5 4 36 36 H 0.96999 * 119.99768 * 359.97438 * 12 10 8 37 37 H 1.08996 * 109.47168 * 300.00347 * 13 12 10 38 38 H 1.09004 * 109.46748 * 60.00473 * 13 12 10 39 39 H 1.09004 * 109.46952 * 59.99927 * 15 14 13 40 40 H 1.08993 * 109.47588 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47345 * 300.00343 * 15 14 13 42 42 H 1.08999 * 109.68296 * 307.49527 * 16 14 13 43 43 H 1.08999 * 109.68379 * 68.04969 * 16 14 13 44 44 H 0.97002 * 120.00105 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.68272 * 69.18228 * 26 17 16 46 46 H 1.08997 * 109.68488 * 189.73995 * 26 17 16 47 47 H 1.09005 * 109.50964 * 172.22578 * 27 26 17 48 48 H 1.09004 * 109.51069 * 292.32187 * 27 26 17 49 49 H 1.08990 * 109.57432 * 290.97304 * 29 8 7 50 50 H 1.08997 * 109.65975 * 170.46552 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0452 -0.7314 1.2420 5 6 3.5211 -0.9781 1.1142 6 8 4.1474 -1.2455 2.1178 7 7 4.1799 -0.9185 -0.0437 8 6 3.5649 -0.5634 -1.3166 9 1 3.7971 0.4753 -1.5517 10 6 4.1144 -1.4543 -2.4008 11 8 4.6395 -2.5085 -2.1114 12 7 4.0221 -1.0795 -3.6922 13 6 4.5558 -1.9458 -4.7462 14 6 4.3236 -1.2920 -6.1098 15 6 2.8370 -0.9711 -6.2763 16 6 4.7678 -2.2514 -7.2199 17 7 4.7113 -1.5340 -8.5034 18 6 4.0626 -2.0711 -9.5833 19 1 3.6508 -1.4233 -10.3429 20 6 3.9345 -3.4483 -9.7014 21 7 4.6923 -4.2442 -8.9773 22 14 2.6866 -4.1717 -10.8883 23 1 3.3217 -4.3663 -12.2165 24 1 2.2115 -5.4799 -10.3705 25 1 1.5346 -3.2442 -11.0216 26 6 5.3720 -0.2222 -8.5923 27 6 4.8984 0.6383 -7.4153 28 8 5.0862 -0.0859 -6.1972 29 6 2.0463 -0.7329 -1.2441 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8551 -0.1224 2.1258 34 1 1.5273 -1.6853 1.3414 35 1 5.1278 -1.1244 -0.0386 36 1 3.6017 -0.2366 -3.9236 37 1 5.6246 -2.0918 -4.5900 38 1 4.0489 -2.9103 -4.7150 39 1 2.5223 -0.2875 -5.4877 40 1 2.6723 -0.5059 -7.2481 41 1 2.2570 -1.8918 -6.2117 42 1 5.7880 -2.5849 -7.0304 43 1 4.0995 -3.1120 -7.2505 44 1 4.6025 -5.2066 -9.0595 45 1 6.4531 -0.3513 -8.5409 46 1 5.1038 0.2611 -9.5317 47 1 5.4773 1.5614 -7.3831 48 1 3.8417 0.8755 -7.5397 49 1 1.8001 -1.7923 -1.1729 50 1 1.5868 -0.3073 -2.1361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107951173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:14 Heat of formation + Delta-G solvation = -100.608276 kcal Electronic energy + Delta-G solvation = -30949.675214 eV Core-core repulsion = 26784.235821 eV Total energy + Delta-G solvation = -4165.439393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03211 -39.64347 -38.80417 -36.94661 -35.15341 -34.44369 -34.25509 -32.00172 -31.32572 -30.20402 -28.30043 -28.03213 -26.69803 -25.89674 -24.44257 -23.30207 -21.90959 -21.35293 -20.55301 -19.57883 -18.84027 -17.91749 -17.28094 -17.06543 -16.65452 -15.89515 -15.75490 -15.27091 -15.11854 -15.07464 -14.69738 -14.43260 -14.16684 -14.06486 -13.86113 -13.73946 -13.57255 -13.12089 -13.00041 -12.80040 -12.57901 -12.52157 -12.13345 -12.06792 -11.76099 -11.68357 -11.34224 -11.27100 -11.21375 -11.08860 -10.88952 -10.72719 -10.39487 -10.32937 -10.28735 -10.06051 -9.90117 -9.63286 -9.30194 -9.12009 -8.99920 -8.60318 -6.80187 -5.90888 -3.34833 2.37546 2.41294 2.84854 3.25046 3.29529 3.36912 3.37831 4.13277 4.14660 4.20468 4.23100 4.27966 4.37883 4.66454 4.74514 4.95458 5.05059 5.10625 5.15742 5.24121 5.27361 5.33387 5.37888 5.40117 5.43599 5.54384 5.57104 5.69680 5.82866 5.83360 5.85300 5.91041 5.98724 6.04883 6.21077 6.33779 6.44989 6.50207 6.57320 6.66645 6.74930 6.99312 7.05491 7.38667 7.44670 7.64761 7.79234 7.96841 8.12137 8.26766 9.04432 9.67387 10.24494 11.17146 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002549 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.278938 B =10981.457722 C =11223.406881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.524 3.476 6 O -0.557 6.557 7 N -0.698 5.698 8 C 0.126 3.874 9 H 0.099 0.901 10 C 0.497 3.503 11 O -0.531 6.531 12 N -0.710 5.710 13 C 0.139 3.861 14 C 0.078 3.922 15 C -0.161 4.161 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.108 3.892 27 C 0.046 3.954 28 O -0.384 6.384 29 C -0.124 4.124 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.406 0.594 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.096 0.904 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 12.009 14.196 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.312 3.688 6 O -0.435 6.435 7 N -0.351 5.351 8 C 0.016 3.984 9 H 0.117 0.883 10 C 0.281 3.719 11 O -0.407 6.407 12 N -0.362 5.362 13 C 0.015 3.985 14 C 0.037 3.963 15 C -0.219 4.219 16 C 0.034 3.966 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.304 6.304 29 C -0.162 4.162 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.242 0.758 36 H 0.238 0.762 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.838 11.015 15.032 20.217 hybrid contribution -0.483 -0.246 -1.259 1.371 sum -8.320 10.769 13.772 19.362 Atomic orbital electron populations 1.21814 0.93617 1.02540 1.02451 1.21260 0.96928 0.99796 0.93234 0.89882 1.21775 0.91707 1.03523 1.00168 1.20144 0.90393 0.75889 0.82416 1.90774 1.68403 1.49188 1.35136 1.45230 1.13778 1.70022 1.06081 1.20888 0.94976 0.98841 0.83646 0.88329 1.20670 0.80129 0.87238 0.83869 1.90763 1.43743 1.23709 1.82510 1.46000 1.60313 1.24416 1.05518 1.21398 1.00038 0.93046 0.83995 1.22552 0.91103 0.87530 0.95158 1.22202 0.95889 1.01766 1.02045 1.21281 1.00058 0.93157 0.82153 1.43991 1.61810 1.17492 1.08106 1.19136 1.28390 0.89693 1.01274 0.91444 1.25054 0.98903 0.96614 0.98889 1.70003 1.38208 1.03129 1.43159 0.86301 0.81327 0.78521 0.80652 1.21300 1.21444 1.20446 1.21604 0.95751 0.88236 0.96203 1.23037 0.99995 0.94222 0.85906 1.87819 1.67811 1.36493 1.38268 1.21981 0.91335 1.03028 0.99900 0.92070 0.91888 0.92166 0.87940 0.87957 0.75753 0.76160 0.90644 0.89840 0.94000 0.90705 0.91819 0.95255 0.88577 0.93379 0.95643 0.92015 0.90162 0.93363 0.89938 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.20 37.16 0.34 -0.31 16 2 C -0.09 -0.52 2.80 -90.41 -0.25 -0.77 16 3 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 4 C -0.13 -0.98 5.35 -28.10 -0.15 -1.13 16 5 C 0.52 6.02 7.71 -11.87 -0.09 5.93 16 6 O -0.56 -8.76 17.78 5.55 0.10 -8.66 16 7 N -0.70 -7.47 4.79 -55.96 -0.27 -7.74 16 8 C 0.13 1.09 3.46 -69.50 -0.24 0.85 16 9 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 10 C 0.50 6.15 6.99 -10.98 -0.08 6.07 16 11 O -0.53 -8.91 16.38 5.56 0.09 -8.82 16 12 N -0.71 -8.51 5.20 -60.29 -0.31 -8.82 16 13 C 0.14 2.15 4.85 -4.04 -0.02 2.13 16 14 C 0.08 1.32 0.78 -90.47 -0.07 1.25 16 15 C -0.16 -2.46 7.86 37.16 0.29 -2.17 16 16 C 0.16 3.55 4.11 -3.53 -0.01 3.53 16 17 N -0.59 -13.77 2.57 -171.83 -0.44 -14.22 16 18 C -0.26 -6.57 9.65 -15.05 -0.15 -6.72 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 20 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 21 N -0.90 -25.01 11.14 55.49 0.62 -24.39 16 22 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.11 2.12 6.73 -3.53 -0.02 2.10 16 27 C 0.05 0.74 6.60 37.31 0.25 0.99 16 28 O -0.38 -6.52 10.18 -35.23 -0.36 -6.88 16 29 C -0.12 -0.83 4.59 -26.57 -0.12 -0.95 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.41 4.79 8.44 -40.82 -0.34 4.45 16 36 H 0.40 3.94 6.98 -40.82 -0.29 3.66 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.49 6.57 -51.93 -0.34 0.15 16 40 H 0.07 1.28 6.12 -51.93 -0.32 0.96 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 2.36 6.16 -51.93 -0.32 2.04 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.74 6.26 -51.93 -0.33 0.42 16 49 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -32.93 391.28 -8.35 -41.28 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.23 Total: 5.87 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -0.41 Total: 10.84 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.40 Total: -55.17 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.17 Total: -24.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.93 -8.35 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.325 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds