Wall clock time and date at job start Tue Mar 31 2020 23:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.66981 * 2 1 4 4 C 1.53064 * 109.66907 * 120.49274 * 2 1 3 5 5 C 1.50178 * 109.89062 * 168.67049 * 4 2 1 6 6 O 1.21286 * 118.24886 * 162.39930 * 5 4 2 7 7 N 1.33356 * 123.50831 * 342.41831 * 5 4 2 8 8 C 1.45758 * 124.10397 * 2.20447 * 7 5 4 9 9 H 1.08999 * 109.30265 * 101.05029 * 8 7 5 10 10 C 1.50701 * 109.29470 * 220.63110 * 8 7 5 11 11 O 1.21277 * 120.00341 * 20.00471 * 10 8 7 12 12 N 1.34784 * 119.99570 * 199.99692 * 10 8 7 13 13 C 1.46498 * 119.99647 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46741 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.51612 * 305.10347 * 14 13 12 16 16 C 1.53297 * 109.51068 * 185.00214 * 14 13 12 17 17 N 1.47152 * 108.38115 * 187.77720 * 16 14 13 18 18 C 1.36945 * 120.98116 * 230.55272 * 17 16 14 19 19 H 1.07995 * 119.99899 * 153.28764 * 18 17 16 20 20 C 1.38818 * 119.99725 * 333.29196 * 18 17 16 21 21 N 1.31612 * 120.00017 * 343.56516 * 20 18 17 22 22 Si 1.86797 * 119.99754 * 163.56629 * 20 18 17 23 23 H 1.48503 * 109.46854 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47394 * 209.99750 * 22 20 18 25 25 H 1.48499 * 109.47265 * 329.99932 * 22 20 18 26 26 C 1.47150 * 118.04139 * 50.53510 * 17 16 14 27 27 C 1.53295 * 108.38127 * 309.46602 * 26 17 16 28 28 O 1.42958 * 109.22430 * 52.30161 * 27 26 17 29 29 C 1.52974 * 110.51653 * 340.96118 * 8 7 5 30 30 H 1.08994 * 109.47736 * 300.00313 * 1 2 3 31 31 H 1.09001 * 109.46616 * 60.00386 * 1 2 3 32 32 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.40576 * 288.79911 * 4 2 1 34 34 H 1.09001 * 109.40261 * 48.63061 * 4 2 1 35 35 H 0.96998 * 117.94865 * 182.21666 * 7 5 4 36 36 H 0.96999 * 119.99768 * 359.97438 * 12 10 8 37 37 H 1.08996 * 109.47168 * 300.00347 * 13 12 10 38 38 H 1.09004 * 109.46748 * 60.00473 * 13 12 10 39 39 H 1.09004 * 109.46952 * 59.99927 * 15 14 13 40 40 H 1.08993 * 109.47588 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47345 * 300.00343 * 15 14 13 42 42 H 1.08999 * 109.68296 * 307.49527 * 16 14 13 43 43 H 1.08999 * 109.68379 * 68.04969 * 16 14 13 44 44 H 0.97002 * 120.00105 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.68272 * 69.18228 * 26 17 16 46 46 H 1.08997 * 109.68488 * 189.73995 * 26 17 16 47 47 H 1.09005 * 109.50964 * 172.22578 * 27 26 17 48 48 H 1.09004 * 109.51069 * 292.32187 * 27 26 17 49 49 H 1.08990 * 109.57432 * 290.97304 * 29 8 7 50 50 H 1.08997 * 109.65975 * 170.46552 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0452 -0.7314 1.2420 5 6 3.5211 -0.9781 1.1142 6 8 4.1474 -1.2455 2.1178 7 7 4.1799 -0.9185 -0.0437 8 6 3.5649 -0.5634 -1.3166 9 1 3.7971 0.4753 -1.5517 10 6 4.1144 -1.4543 -2.4008 11 8 4.6395 -2.5085 -2.1114 12 7 4.0221 -1.0795 -3.6922 13 6 4.5558 -1.9458 -4.7462 14 6 4.3236 -1.2920 -6.1098 15 6 2.8370 -0.9711 -6.2763 16 6 4.7678 -2.2514 -7.2199 17 7 4.7113 -1.5340 -8.5034 18 6 4.0626 -2.0711 -9.5833 19 1 3.6508 -1.4233 -10.3429 20 6 3.9345 -3.4483 -9.7014 21 7 4.6923 -4.2442 -8.9773 22 14 2.6866 -4.1717 -10.8883 23 1 3.3217 -4.3663 -12.2165 24 1 2.2115 -5.4799 -10.3705 25 1 1.5346 -3.2442 -11.0216 26 6 5.3720 -0.2222 -8.5923 27 6 4.8984 0.6383 -7.4153 28 8 5.0862 -0.0859 -6.1972 29 6 2.0463 -0.7329 -1.2441 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8551 -0.1224 2.1258 34 1 1.5273 -1.6853 1.3414 35 1 5.1278 -1.1244 -0.0386 36 1 3.6017 -0.2366 -3.9236 37 1 5.6246 -2.0918 -4.5900 38 1 4.0489 -2.9103 -4.7150 39 1 2.5223 -0.2875 -5.4877 40 1 2.6723 -0.5059 -7.2481 41 1 2.2570 -1.8918 -6.2117 42 1 5.7880 -2.5849 -7.0304 43 1 4.0995 -3.1120 -7.2505 44 1 4.6025 -5.2066 -9.0595 45 1 6.4531 -0.3513 -8.5409 46 1 5.1038 0.2611 -9.5317 47 1 5.4773 1.5614 -7.3831 48 1 3.8417 0.8755 -7.5397 49 1 1.8001 -1.7923 -1.1729 50 1 1.5868 -0.3073 -2.1361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107951173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:13 Heat of formation + Delta-G solvation = -125.525878 kcal Electronic energy + Delta-G solvation = -30950.755723 eV Core-core repulsion = 26784.235821 eV Total energy + Delta-G solvation = -4166.519902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90824 -40.88023 -40.04606 -37.73529 -36.57564 -35.97688 -34.98783 -33.32114 -33.16604 -31.04800 -29.54735 -28.80209 -28.05549 -27.36519 -25.36948 -24.95067 -22.98581 -22.43418 -21.58374 -20.31860 -20.20629 -19.04821 -18.70828 -18.14713 -17.63548 -17.28023 -16.83389 -16.60105 -16.26144 -16.08808 -16.00378 -15.56667 -15.42196 -15.28378 -15.09692 -14.93668 -14.65251 -14.42888 -14.23687 -13.90411 -13.44199 -13.41700 -13.16308 -12.96750 -12.89813 -12.77094 -12.75525 -12.51609 -12.43027 -12.40609 -12.16342 -11.92667 -11.88557 -11.83587 -11.62872 -11.25751 -11.09715 -10.83107 -10.72332 -10.48466 -10.22489 -10.13386 -8.70155 -7.89206 -5.36306 1.43283 1.46157 1.48373 1.49111 1.57355 1.92731 2.35576 2.49024 2.80826 3.25636 3.46341 3.51850 3.54790 3.62313 3.74435 3.93121 4.00378 4.04959 4.13246 4.19242 4.44393 4.46666 4.48944 4.57721 4.66032 4.69128 4.70290 4.74482 4.80538 4.82080 4.85744 4.98791 5.00390 5.06827 5.14802 5.17084 5.23263 5.31840 5.35224 5.40886 5.50641 5.55696 5.60961 5.62635 6.22430 6.30439 6.39216 6.48146 7.07896 7.08136 7.15794 7.77373 8.31073 9.16253 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002549 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.278938 B =10981.457722 C =11223.406881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.100 0.900 4 C -0.128 4.128 5 C 0.519 3.481 6 O -0.609 6.609 7 N -0.701 5.701 8 C 0.133 3.867 9 H 0.138 0.862 10 C 0.499 3.501 11 O -0.581 6.581 12 N -0.694 5.694 13 C 0.149 3.851 14 C 0.094 3.906 15 C -0.153 4.153 16 C 0.167 3.833 17 N -0.607 5.607 18 C -0.258 4.258 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.100 3.900 27 C 0.054 3.946 28 O -0.384 6.384 29 C -0.124 4.124 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.396 0.604 36 H 0.419 0.581 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.055 0.945 42 H -0.012 1.012 43 H 0.066 0.934 44 H 0.249 0.751 45 H 0.009 0.991 46 H 0.071 0.929 47 H 0.117 0.883 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 15.323 14.381 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.118 0.882 4 C -0.167 4.167 5 C 0.308 3.692 6 O -0.491 6.491 7 N -0.351 5.351 8 C 0.025 3.975 9 H 0.155 0.845 10 C 0.284 3.716 11 O -0.461 6.461 12 N -0.347 5.347 13 C 0.024 3.976 14 C 0.053 3.947 15 C -0.211 4.211 16 C 0.040 3.960 17 N -0.331 5.331 18 C -0.387 4.387 19 H 0.092 0.908 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.189 1.189 26 C -0.026 4.026 27 C -0.023 4.023 28 O -0.304 6.304 29 C -0.162 4.162 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.006 0.994 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.090 0.910 47 H 0.135 0.865 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.497 14.412 15.183 23.419 hybrid contribution 0.446 -1.259 -1.378 1.919 sum -10.051 13.153 13.806 21.555 Atomic orbital electron populations 1.21797 0.92363 1.02591 1.03412 1.21234 0.97726 1.00005 0.91160 0.88170 1.21836 0.88518 1.04350 1.02021 1.20909 0.91876 0.74692 0.81699 1.90744 1.69802 1.51673 1.36908 1.45391 1.13496 1.69313 1.06860 1.21115 0.96030 0.99334 0.81029 0.84511 1.21372 0.78942 0.86895 0.84348 1.90754 1.45957 1.26151 1.83189 1.45738 1.59917 1.24401 1.04695 1.21004 0.98828 0.93200 0.84547 1.22175 0.92525 0.86406 0.93616 1.22118 0.93720 1.02346 1.02874 1.21059 0.97109 0.93814 0.84007 1.44255 1.62179 1.18646 1.08016 1.19497 1.27637 0.89931 1.01681 0.90833 1.25797 1.00743 0.97146 1.00858 1.70179 1.40100 1.02807 1.45219 0.85310 0.79508 0.77512 0.78328 1.21534 1.22203 1.18886 1.21841 0.94673 0.87213 0.98830 1.23095 1.01524 0.94195 0.83518 1.87832 1.68021 1.35903 1.38631 1.22085 0.89545 1.02638 1.01902 0.91311 0.90762 0.92625 0.86769 0.87594 0.76888 0.74247 0.92849 0.91075 0.89553 0.92094 0.92551 0.99378 0.91584 0.94141 0.97287 0.91026 0.86510 0.91733 0.91551 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.20 71.98 0.66 -0.04 16 2 C -0.08 -0.60 2.80 -10.66 -0.03 -0.63 16 3 H 0.10 0.46 8.13 -2.39 -0.02 0.44 16 4 C -0.13 -1.64 5.35 29.71 0.16 -1.48 16 5 C 0.52 11.57 7.71 87.71 0.68 12.25 16 6 O -0.61 -19.58 17.78 -3.05 -0.05 -19.63 16 7 N -0.70 -14.33 4.79 -450.12 -2.16 -16.49 16 8 C 0.13 1.93 3.46 44.38 0.15 2.09 16 9 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 10 C 0.50 11.63 6.99 87.66 0.61 12.24 16 11 O -0.58 -19.83 16.38 -3.02 -0.05 -19.88 16 12 N -0.69 -15.12 5.20 -463.06 -2.41 -17.53 16 13 C 0.15 4.64 4.85 86.38 0.42 5.06 16 14 C 0.09 3.13 0.78 -10.70 -0.01 3.12 16 15 C -0.15 -4.27 7.86 71.98 0.57 -3.71 16 16 C 0.17 7.67 4.11 86.35 0.35 8.03 16 17 N -0.61 -28.60 2.57 -697.54 -1.79 -30.39 16 18 C -0.26 -13.30 9.65 84.03 0.81 -12.49 16 19 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -2.68 4.95 84.86 0.42 -2.26 16 21 N -0.94 -54.22 11.14 21.65 0.24 -53.98 16 22 Si 0.97 43.01 29.58 68.60 2.03 45.04 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 C 0.10 3.81 6.73 86.35 0.58 4.39 16 27 C 0.05 1.56 6.60 72.08 0.48 2.03 16 28 O -0.38 -12.16 10.18 -148.98 -1.52 -13.68 16 29 C -0.12 -1.21 4.59 30.70 0.14 -1.07 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.40 9.46 8.44 -92.71 -0.78 8.67 16 36 H 0.42 6.38 6.98 -92.71 -0.65 5.73 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.09 1.63 6.57 -2.38 -0.02 1.61 16 40 H 0.06 1.91 6.12 -2.39 -0.01 1.90 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.07 3.42 6.16 -2.39 -0.01 3.41 16 44 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 47 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 48 H 0.06 1.71 6.26 -2.38 -0.01 1.69 16 49 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 50 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -77.05 391.28 -0.18 -77.23 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.47 Total: 21.78 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 5.99 Total: 27.53 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.11 Total: -118.38 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -1.62 Total: -53.18 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -77.05 -0.18 -77.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107951173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.299 kcal (2) G-P(sol) polarization free energy of solvation -77.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds