Wall clock time and date at job start Tue Mar 31 2020 23:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 115.55021 * 2 1 4 4 C 1.53073 * 117.49506 * 214.27398 * 2 1 3 5 5 C 1.52999 * 59.98671 * 252.51471 * 4 2 1 6 6 H 1.08999 * 117.49677 * 107.49431 * 5 4 2 7 7 C 1.50697 * 117.49918 * 252.50025 * 5 4 2 8 8 O 1.21283 * 120.00152 * 68.74335 * 7 5 4 9 9 N 1.34777 * 119.99863 * 248.74714 * 7 5 4 10 10 C 1.46509 * 119.99865 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.46833 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.50735 * 305.08488 * 11 10 9 13 13 C 1.53095 * 109.50464 * 184.99640 * 11 10 9 14 14 N 1.47014 * 109.25935 * 183.21560 * 13 11 10 15 15 C 1.46901 * 111.00309 * 182.39579 * 14 13 11 16 16 C 1.50694 * 109.47318 * 66.36124 * 15 14 13 17 17 O 1.21293 * 119.99908 * 6.27861 * 16 15 14 18 18 N 1.34774 * 120.00253 * 186.28421 * 16 15 14 19 19 C 1.37102 * 120.00227 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99927 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99764 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00339 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46891 * 89.99982 * 23 21 19 25 25 H 1.48497 * 109.47126 * 209.99861 * 23 21 19 26 26 H 1.48496 * 109.46842 * 329.99697 * 23 21 19 27 27 C 1.47012 * 110.75263 * 58.62036 * 14 13 11 28 28 C 1.53100 * 109.25741 * 301.38327 * 27 14 13 29 29 O 1.43017 * 109.50638 * 65.21850 * 11 10 9 30 30 H 1.09000 * 109.47321 * 274.32557 * 1 2 3 31 31 H 1.08998 * 109.47211 * 34.32693 * 1 2 3 32 32 H 1.09007 * 109.47269 * 154.32677 * 1 2 3 33 33 H 1.09000 * 117.51796 * 145.03352 * 4 2 1 34 34 H 1.09001 * 117.49086 * 0.02562 * 4 2 1 35 35 H 0.97001 * 120.00122 * 359.97438 * 9 7 5 36 36 H 1.08998 * 109.46734 * 59.99409 * 10 9 7 37 37 H 1.09001 * 109.46988 * 299.99580 * 10 9 7 38 38 H 1.09000 * 109.47355 * 60.00346 * 12 11 10 39 39 H 1.09005 * 109.46564 * 180.02562 * 12 11 10 40 40 H 1.08996 * 109.46976 * 300.00142 * 12 11 10 41 41 H 1.09004 * 109.51006 * 303.15140 * 13 11 10 42 42 H 1.09000 * 109.50961 * 63.24000 * 13 11 10 43 43 H 1.09002 * 109.47448 * 186.36978 * 15 14 13 44 44 H 1.09011 * 109.46794 * 306.36188 * 15 14 13 45 45 H 0.97003 * 119.99975 * 359.97438 * 18 16 15 46 46 H 0.97000 * 120.00039 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.50946 * 61.31826 * 27 14 13 48 48 H 1.09001 * 109.50855 * 181.40805 * 27 14 13 49 49 H 1.08996 * 109.50907 * 176.78266 * 28 27 14 50 50 H 1.09005 * 109.50775 * 296.91477 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1221 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6111 -1.8579 1.2691 7 6 3.5292 -0.7807 1.4611 8 8 3.9709 0.3473 1.4025 9 7 4.1946 -1.7301 2.1484 10 6 5.4511 -1.3994 2.8252 11 6 5.9962 -2.6454 3.5260 12 6 4.9281 -3.2130 4.4630 13 6 7.2410 -2.2731 4.3356 14 7 7.8047 -3.4870 4.9440 15 6 8.9706 -3.1654 5.7778 16 6 8.5293 -2.3492 6.9652 17 8 7.3481 -2.1597 7.1655 18 7 9.4470 -1.8298 7.8045 19 6 9.0454 -1.0876 8.8851 20 1 7.9937 -0.9190 9.0635 21 6 9.9915 -0.5526 9.7506 22 7 9.6066 0.1592 10.7861 23 14 11.8106 -0.8449 9.4423 24 1 12.3474 0.2400 8.5821 25 1 12.5368 -0.8547 10.7376 26 1 11.9935 -2.1522 8.7624 27 6 8.1517 -4.4742 3.9114 28 6 6.8977 -4.8245 3.1059 29 8 6.3461 -3.6286 2.5481 30 1 -0.3634 0.0775 1.0247 31 1 -0.3633 0.8487 -0.5795 32 1 -0.3634 -0.9263 -0.4452 33 1 3.1718 -0.8770 -1.2681 34 1 1.6112 -1.8595 -1.2678 35 1 3.8411 -2.6322 2.1955 36 1 5.2714 -0.6173 3.5629 37 1 6.1770 -1.0476 2.0921 38 1 4.0427 -3.4793 3.8858 39 1 5.3173 -4.1004 4.9622 40 1 4.6637 -2.4634 5.2088 41 1 7.9812 -1.8187 3.6770 42 1 6.9679 -1.5660 5.1188 43 1 9.4356 -4.0885 6.1239 44 1 9.6902 -2.5939 5.1913 45 1 10.3916 -1.9815 7.6444 46 1 10.2671 0.5331 11.3901 47 1 8.9064 -4.0550 3.2459 48 1 8.5438 -5.3742 4.3853 49 1 7.1614 -5.5127 2.3029 50 1 6.1633 -5.2929 3.7612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108125251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:51 Heat of formation + Delta-G solvation = -105.174031 kcal Electronic energy + Delta-G solvation = -30168.086258 eV Core-core repulsion = 26002.448879 eV Total energy + Delta-G solvation = -4165.637379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59409 -40.86706 -39.99393 -37.89664 -36.87370 -36.10008 -35.72410 -33.75993 -33.30471 -30.69779 -29.76080 -28.86543 -27.94648 -26.84815 -25.16539 -24.71837 -22.92430 -21.81402 -21.26158 -21.09931 -20.32623 -20.22555 -18.63911 -17.91049 -17.64194 -17.14245 -16.93405 -16.78908 -16.39182 -16.10113 -15.95701 -15.68665 -15.51593 -15.15798 -14.94663 -14.81754 -14.77263 -14.30607 -14.15540 -14.10889 -13.87028 -13.69242 -13.44986 -13.34756 -13.00430 -12.90879 -12.79911 -12.69173 -12.42447 -12.32922 -12.25271 -12.20726 -11.99243 -11.50641 -11.40024 -11.32935 -11.09079 -10.87284 -10.72828 -10.31171 -10.22651 -10.19544 -9.30542 -8.41687 -6.02079 1.28378 1.34070 1.42738 1.44006 1.95496 2.00632 2.21812 2.52124 2.63864 2.84900 3.12078 3.14596 3.61498 3.71134 3.75121 3.78328 3.82717 3.88025 4.02774 4.11476 4.20492 4.22949 4.31257 4.40426 4.42309 4.44073 4.53436 4.55605 4.68135 4.68613 4.76484 4.81451 4.86010 4.87580 4.93016 4.94968 5.04242 5.06271 5.21605 5.29869 5.35173 5.43021 5.51804 5.78933 5.94196 6.03096 6.17185 6.48577 6.59231 6.88456 7.17987 7.39865 7.96919 8.75895 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002324 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.697761 B =12046.479052 C =13177.946335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.133 4.133 3 H 0.089 0.911 4 C -0.132 4.132 5 C -0.195 4.195 6 H 0.151 0.849 7 C 0.534 3.466 8 O -0.592 6.592 9 N -0.703 5.703 10 C 0.141 3.859 11 C 0.127 3.873 12 C -0.156 4.156 13 C 0.035 3.965 14 N -0.525 5.525 15 C 0.054 3.946 16 C 0.450 3.550 17 O -0.600 6.600 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.230 1.230 27 C 0.015 3.985 28 C 0.060 3.940 29 O -0.379 6.379 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.416 0.584 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.388 0.612 46 H 0.278 0.722 47 H 0.048 0.952 48 H 0.109 0.891 49 H 0.129 0.871 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -12.851 -24.813 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 H 0.108 0.892 4 C -0.169 4.169 5 C -0.216 4.216 6 H 0.168 0.832 7 C 0.322 3.678 8 O -0.473 6.473 9 N -0.355 5.355 10 C 0.016 3.984 11 C 0.086 3.914 12 C -0.213 4.213 13 C -0.094 4.094 14 N -0.250 5.250 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.484 6.484 18 N -0.236 5.236 19 C -0.453 4.453 20 H 0.074 0.926 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.784 3.216 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.153 1.153 27 C -0.112 4.112 28 C -0.016 4.016 29 O -0.298 6.298 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.153 0.847 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.127 0.873 49 H 0.147 0.853 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.145 -12.025 -24.420 28.715 hybrid contribution 1.762 0.601 0.803 2.027 sum -7.383 -11.424 -23.617 27.254 Atomic orbital electron populations 1.21395 0.90213 1.03443 1.02493 1.22431 0.96688 0.94084 1.01966 0.89240 1.23213 1.02832 1.01285 0.89603 1.22354 0.96144 1.06406 0.96681 0.83173 1.20368 0.85605 0.83970 0.77832 1.90684 1.70215 1.23123 1.63284 1.45735 1.23512 1.14086 1.52211 1.21100 0.86030 0.95167 0.96122 1.21402 0.93508 0.88455 0.87994 1.22124 0.98018 1.02285 0.98888 1.22617 0.96408 0.93103 0.97315 1.61713 1.29758 1.11679 1.21872 1.21872 0.92398 1.01005 0.92463 1.20855 0.86068 0.83363 0.85925 1.90532 1.18836 1.63144 1.75839 1.42059 1.08285 1.48492 1.24730 1.18971 0.94608 1.28602 1.03110 0.92604 1.26110 1.04953 0.95755 0.94757 1.69808 1.37047 1.35226 1.15521 0.85380 0.76441 0.80648 0.79151 1.18484 1.20060 1.15291 1.22993 0.98488 0.96703 0.93059 1.22911 0.93610 0.86546 0.98558 1.87995 1.82287 1.27070 1.32470 0.92074 0.91200 0.90431 0.89454 0.84691 0.74551 0.91640 0.91666 0.90448 0.91027 0.93451 0.94321 0.91309 0.85544 0.90813 0.77638 0.91229 0.93362 0.87300 0.85295 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.19 71.98 0.73 -0.54 16 2 C -0.13 -2.18 5.92 -10.77 -0.06 -2.24 16 3 H 0.09 1.97 7.67 -2.39 -0.02 1.95 16 4 C -0.13 -1.74 9.88 30.62 0.30 -1.43 16 5 C -0.20 -3.22 5.91 -11.54 -0.07 -3.29 16 6 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 7 C 0.53 13.45 7.61 87.66 0.67 14.12 16 8 O -0.59 -20.56 16.26 -3.04 -0.05 -20.61 16 9 N -0.70 -15.65 5.19 -463.06 -2.41 -18.06 16 10 C 0.14 3.79 4.85 86.38 0.42 4.20 16 11 C 0.13 3.23 0.78 -10.76 -0.01 3.22 16 12 C -0.16 -3.95 7.94 71.98 0.57 -3.38 16 13 C 0.03 1.07 4.00 86.31 0.34 1.41 16 14 N -0.53 -14.87 3.79 -899.77 -3.41 -18.28 16 15 C 0.05 1.59 5.45 85.55 0.47 2.06 16 16 C 0.45 19.88 7.35 87.66 0.64 20.53 16 17 O -0.60 -32.17 14.25 -3.07 -0.04 -32.21 16 18 N -0.59 -27.71 5.09 -307.00 -1.56 -29.27 16 19 C -0.32 -18.89 10.16 84.04 0.85 -18.04 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.86 16 21 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 22 N -0.94 -56.72 13.96 21.66 0.30 -56.41 16 23 Si 0.96 38.93 27.74 68.60 1.90 40.83 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 27 C 0.01 0.28 5.64 86.32 0.49 0.77 16 28 C 0.06 1.01 6.61 72.02 0.48 1.48 16 29 O -0.38 -8.26 10.23 -148.98 -1.52 -9.78 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.55 7.90 -2.38 -0.02 0.53 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.14 0.96 8.05 -2.39 -0.02 0.94 16 35 H 0.42 6.98 6.98 -92.71 -0.65 6.34 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.48 6.57 -2.39 -0.02 1.46 16 39 H 0.07 1.92 6.13 -2.38 -0.01 1.91 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.07 2.73 6.11 -2.39 -0.01 2.71 16 43 H 0.13 2.98 8.04 -2.39 -0.02 2.96 16 44 H 0.07 1.88 8.12 -2.38 -0.02 1.86 16 45 H 0.39 15.03 5.76 -92.71 -0.53 14.50 16 46 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.11 1.60 8.09 -2.39 -0.02 1.58 16 49 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.11 6.50 -2.38 -0.02 1.10 16 Total: -1.00 -82.14 398.06 -0.78 -82.92 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: -0.28 Total: 42.50 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.29 Total: 18.37 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -7.07 Total: -122.02 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -1.62 Total: -62.60 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -82.14 -0.78 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108125251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.256 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds