Wall clock time and date at job start Tue Mar 31 2020 23:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 115.56279 * 2 1 4 4 C 1.53002 * 117.49637 * 145.67970 * 2 1 3 5 5 C 1.52993 * 117.49541 * 214.30322 * 2 1 3 6 6 H 1.08997 * 117.52148 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49647 * 145.02354 * 5 2 1 8 8 O 1.21277 * 120.00252 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00050 * 180.02562 * 7 5 2 10 10 C 1.46505 * 120.00010 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.50324 * 59.91383 * 11 10 9 13 13 C 1.53096 * 109.50607 * 179.97438 * 11 10 9 14 14 N 1.47012 * 109.26142 * 176.78270 * 13 11 10 15 15 C 1.46899 * 111.00095 * 177.60897 * 14 13 11 16 16 C 1.50703 * 109.47316 * 293.64010 * 15 14 13 17 17 O 1.21292 * 119.99596 * 353.80524 * 16 15 14 18 18 N 1.34773 * 119.99896 * 173.80820 * 16 15 14 19 19 C 1.37090 * 119.99924 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00182 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00452 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99507 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00469 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47133 * 89.99931 * 23 21 19 25 25 H 1.48495 * 109.47017 * 210.00068 * 23 21 19 26 26 H 1.48498 * 109.47094 * 330.00182 * 23 21 19 27 27 C 1.47019 * 110.75129 * 301.39092 * 14 13 11 28 28 C 1.53095 * 109.25887 * 58.61414 * 27 14 13 29 29 O 1.43010 * 109.50522 * 299.78479 * 11 10 9 30 30 H 1.08996 * 109.47457 * 205.69694 * 1 2 3 31 31 H 1.09007 * 109.46985 * 325.69088 * 1 2 3 32 32 H 1.08996 * 109.47149 * 85.68936 * 1 2 3 33 33 H 1.09006 * 117.49991 * 0.02562 * 4 2 1 34 34 H 1.08995 * 117.50425 * 214.97653 * 4 2 1 35 35 H 0.97003 * 120.00190 * 0.02562 * 9 7 5 36 36 H 1.08994 * 109.47146 * 60.00345 * 10 9 7 37 37 H 1.09002 * 109.46864 * 299.99865 * 10 9 7 38 38 H 1.09002 * 109.46893 * 180.08371 * 12 11 10 39 39 H 1.08993 * 109.47334 * 300.08317 * 12 11 10 40 40 H 1.09004 * 109.47601 * 60.08727 * 12 11 10 41 41 H 1.09010 * 109.50230 * 56.84822 * 13 11 10 42 42 H 1.09001 * 109.50863 * 296.72087 * 13 11 10 43 43 H 1.09000 * 109.46950 * 53.64198 * 15 14 13 44 44 H 1.09002 * 109.46501 * 173.64197 * 15 14 13 45 45 H 0.96998 * 120.00072 * 359.97438 * 18 16 15 46 46 H 0.97001 * 119.99824 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.50024 * 178.54956 * 27 14 13 48 48 H 1.08998 * 109.50420 * 298.67559 * 27 14 13 49 49 H 1.08997 * 109.50420 * 183.21610 * 28 27 14 50 50 H 1.08997 * 109.54551 * 63.10460 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1209 0.7652 5 6 2.2363 -1.1211 -0.7648 6 1 1.6114 -1.8590 -1.2678 7 6 3.5292 -0.7813 -1.4607 8 8 3.9720 0.3461 -1.4008 9 7 4.1934 -1.7304 -2.1496 10 6 5.4505 -1.4002 -2.8256 11 6 5.9940 -2.6458 -3.5285 12 6 4.9739 -3.1377 -4.5574 13 6 7.3074 -2.3016 -4.2358 14 7 7.8641 -3.5187 -4.8441 15 6 9.0986 -3.2208 -5.5826 16 6 8.7762 -2.3500 -6.7695 17 8 7.6210 -2.1033 -7.0447 18 7 9.7716 -1.8454 -7.5252 19 6 9.4784 -1.0528 -8.6046 20 1 8.4498 -0.8330 -8.8497 21 6 10.5046 -0.5321 -9.3835 22 7 11.7563 -0.7991 -9.0850 23 14 10.1051 0.5473 -10.8547 24 1 10.0457 1.9675 -10.4251 25 1 11.1597 0.3863 -11.8876 26 1 8.7922 0.1462 -11.4210 27 6 8.0965 -4.5515 -3.8240 28 6 6.7750 -4.8732 -3.1210 29 8 6.2328 -3.6732 -2.5628 30 1 -0.3634 -0.9260 0.4456 31 1 -0.3633 0.8489 0.5793 32 1 -0.3633 0.0772 -1.0247 33 1 1.6111 -1.8586 1.2683 34 1 3.1715 -0.8751 1.2684 35 1 3.8391 -2.6321 -2.1978 36 1 6.1767 -1.0508 -2.0918 37 1 5.2721 -0.6166 -3.5620 38 1 5.3610 -4.0259 -5.0568 39 1 4.0389 -3.3826 -4.0536 40 1 4.7953 -2.3551 -5.2948 41 1 8.0162 -1.8996 -3.5116 42 1 7.1193 -1.5600 -5.0121 43 1 9.7966 -2.6990 -4.9279 44 1 9.5496 -4.1516 -5.9266 45 1 10.6954 -2.0425 -7.3049 46 1 12.4727 -0.4359 -9.6288 47 1 8.4843 -5.4522 -4.2998 48 1 8.8178 -4.1856 -3.0933 49 1 6.9528 -5.5967 -2.3254 50 1 6.0709 -5.2898 -3.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108133574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:55 Heat of formation + Delta-G solvation = -86.462995 kcal Electronic energy + Delta-G solvation = -30118.244744 eV Core-core repulsion = 25953.418736 eV Total energy + Delta-G solvation = -4164.826008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49219 -39.78888 -38.16126 -37.09732 -35.57245 -34.86521 -33.82729 -32.29351 -31.25762 -29.45567 -29.14563 -27.45541 -26.88565 -25.22693 -23.87764 -23.82379 -21.88776 -21.06916 -20.21533 -19.27705 -19.22308 -17.92640 -17.69488 -16.67224 -16.25638 -15.92133 -15.79678 -15.28453 -15.08767 -14.90928 -14.71554 -14.34020 -14.21459 -14.12540 -13.78404 -13.60028 -13.42534 -13.30383 -13.11396 -12.93854 -12.56453 -12.31364 -12.06727 -12.02569 -11.72661 -11.70160 -11.57974 -11.50573 -11.22364 -11.15678 -10.88736 -10.66204 -10.41840 -10.40720 -10.34323 -10.23566 -9.92541 -9.63333 -9.49354 -9.12529 -8.48228 -8.02226 -7.94465 -6.43786 -3.84604 2.38755 2.96300 3.16556 3.25571 3.31077 3.55367 3.60802 3.85520 3.87740 4.19977 4.40811 4.46320 4.52950 4.71358 4.81855 4.92126 4.94039 4.99945 5.00642 5.04897 5.21497 5.26241 5.30967 5.33413 5.38845 5.43012 5.54158 5.56419 5.63722 5.69671 5.72255 5.72904 5.75041 5.82051 5.91184 5.98743 6.00634 6.06329 6.17695 6.23753 6.32671 6.45574 7.09017 7.11251 7.24177 7.42639 7.53253 8.03722 8.14733 8.58968 9.15836 9.51827 10.03071 10.73836 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002328 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.175420 B =12026.842817 C =13451.021821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.190 4.190 6 H 0.123 0.877 7 C 0.540 3.460 8 O -0.544 6.544 9 N -0.714 5.714 10 C 0.137 3.863 11 C 0.112 3.888 12 C -0.162 4.162 13 C 0.034 3.966 14 N -0.508 5.508 15 C 0.046 3.954 16 C 0.442 3.558 17 O -0.576 6.576 18 N -0.563 5.563 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.015 3.985 28 C 0.065 3.935 29 O -0.379 6.379 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.095 0.905 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 -7.358 17.939 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.211 4.211 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.421 6.421 9 N -0.366 5.366 10 C 0.013 3.987 11 C 0.072 3.928 12 C -0.220 4.220 13 C -0.095 4.095 14 N -0.233 5.233 15 C -0.085 4.085 16 C 0.227 3.773 17 O -0.460 6.460 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.114 4.114 28 C -0.012 4.012 29 O -0.298 6.298 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.129 0.871 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.276 -6.483 17.529 24.138 hybrid contribution 1.293 0.055 -0.494 1.385 sum -13.983 -6.428 17.035 22.957 Atomic orbital electron populations 1.21403 0.92235 1.02172 1.02262 1.22383 0.95201 0.95157 1.01414 0.86465 1.23099 1.03142 1.01530 0.90860 1.22291 0.97783 1.05300 0.95773 0.85949 1.19649 0.84692 0.84676 0.78330 1.90705 1.68703 1.21144 1.61565 1.45789 1.24276 1.13605 1.52903 1.21326 0.85256 0.95394 0.96753 1.21724 0.95045 0.87549 0.88490 1.22207 0.97109 1.03918 0.98729 1.22746 0.94403 0.93739 0.98604 1.61766 1.27814 1.09118 1.24579 1.21893 0.90583 1.00473 0.95600 1.19695 0.86371 0.85271 0.85929 1.90495 1.19779 1.63207 1.72561 1.41875 1.07872 1.44261 1.25983 1.19684 0.94933 1.24489 1.03684 0.87892 1.25271 0.94710 0.98485 0.99508 1.69614 0.98738 1.45478 1.40424 0.85858 0.78215 0.79838 0.80396 1.20398 1.20934 1.19409 1.22828 0.97732 0.96747 0.94051 1.22636 0.93716 0.86932 0.97898 1.87971 1.83763 1.24041 1.34069 0.92378 0.91678 0.91886 0.87820 0.88279 0.76044 0.90870 0.89538 0.90385 0.93238 0.90790 0.94657 0.87069 0.93419 0.89096 0.77518 0.91864 0.89696 0.94251 0.88718 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.19 37.16 0.38 -0.39 16 2 C -0.12 -1.05 5.92 -90.62 -0.54 -1.58 16 3 H 0.12 1.21 7.67 -51.93 -0.40 0.81 16 4 C -0.15 -1.14 9.88 -26.73 -0.26 -1.40 16 5 C -0.19 -1.70 5.91 -91.77 -0.54 -2.25 16 6 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.54 6.76 7.61 -10.98 -0.08 6.68 16 8 O -0.54 -8.97 16.26 5.56 0.09 -8.88 16 9 N -0.71 -8.13 5.15 -60.29 -0.31 -8.44 16 10 C 0.14 1.80 4.82 -4.04 -0.02 1.79 16 11 C 0.11 1.48 0.76 -90.57 -0.07 1.41 16 12 C -0.16 -2.11 8.00 37.16 0.30 -1.81 16 13 C 0.03 0.53 4.00 -3.71 -0.01 0.52 16 14 N -0.51 -8.02 3.79 -235.74 -0.89 -8.92 16 15 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 16 C 0.44 10.09 7.35 -10.99 -0.08 10.01 16 17 O -0.58 -14.85 14.25 5.55 0.08 -14.77 16 18 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 19 C -0.30 -8.19 9.68 -14.94 -0.14 -8.34 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.01 0.18 5.65 -3.71 -0.02 0.16 16 28 C 0.07 0.70 6.61 37.21 0.25 0.94 16 29 O -0.38 -4.73 10.04 -35.23 -0.35 -5.08 16 30 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.40 3.80 7.20 -40.82 -0.29 3.50 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.10 6.13 -51.93 -0.32 0.79 16 39 H 0.05 0.52 6.86 -51.93 -0.36 0.17 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.11 2.12 6.10 -51.93 -0.32 1.80 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 45 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -32.41 401.43 -8.84 -41.25 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -8.17 Total: 13.53 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -0.98 Total: 6.99 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.54 Total: -55.05 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.18 Total: -28.73 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.41 -8.84 -41.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108133574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.208 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds