Wall clock time and date at job start Tue Mar 31 2020 23:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 115.56279 * 2 1 4 4 C 1.53002 * 117.49637 * 145.67970 * 2 1 3 5 5 C 1.52993 * 117.49541 * 214.30322 * 2 1 3 6 6 H 1.08997 * 117.52148 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49647 * 145.02354 * 5 2 1 8 8 O 1.21277 * 120.00252 * 0.02562 * 7 5 2 9 9 N 1.34776 * 120.00050 * 180.02562 * 7 5 2 10 10 C 1.46505 * 120.00010 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.50324 * 59.91383 * 11 10 9 13 13 C 1.53096 * 109.50607 * 179.97438 * 11 10 9 14 14 N 1.47012 * 109.26142 * 176.78270 * 13 11 10 15 15 C 1.46899 * 111.00095 * 177.60897 * 14 13 11 16 16 C 1.50703 * 109.47316 * 293.64010 * 15 14 13 17 17 O 1.21292 * 119.99596 * 353.80524 * 16 15 14 18 18 N 1.34773 * 119.99896 * 173.80820 * 16 15 14 19 19 C 1.37090 * 119.99924 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00182 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00452 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99507 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00469 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47133 * 89.99931 * 23 21 19 25 25 H 1.48495 * 109.47017 * 210.00068 * 23 21 19 26 26 H 1.48498 * 109.47094 * 330.00182 * 23 21 19 27 27 C 1.47019 * 110.75129 * 301.39092 * 14 13 11 28 28 C 1.53095 * 109.25887 * 58.61414 * 27 14 13 29 29 O 1.43010 * 109.50522 * 299.78479 * 11 10 9 30 30 H 1.08996 * 109.47457 * 205.69694 * 1 2 3 31 31 H 1.09007 * 109.46985 * 325.69088 * 1 2 3 32 32 H 1.08996 * 109.47149 * 85.68936 * 1 2 3 33 33 H 1.09006 * 117.49991 * 0.02562 * 4 2 1 34 34 H 1.08995 * 117.50425 * 214.97653 * 4 2 1 35 35 H 0.97003 * 120.00190 * 0.02562 * 9 7 5 36 36 H 1.08994 * 109.47146 * 60.00345 * 10 9 7 37 37 H 1.09002 * 109.46864 * 299.99865 * 10 9 7 38 38 H 1.09002 * 109.46893 * 180.08371 * 12 11 10 39 39 H 1.08993 * 109.47334 * 300.08317 * 12 11 10 40 40 H 1.09004 * 109.47601 * 60.08727 * 12 11 10 41 41 H 1.09010 * 109.50230 * 56.84822 * 13 11 10 42 42 H 1.09001 * 109.50863 * 296.72087 * 13 11 10 43 43 H 1.09000 * 109.46950 * 53.64198 * 15 14 13 44 44 H 1.09002 * 109.46501 * 173.64197 * 15 14 13 45 45 H 0.96998 * 120.00072 * 359.97438 * 18 16 15 46 46 H 0.97001 * 119.99824 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.50024 * 178.54956 * 27 14 13 48 48 H 1.08998 * 109.50420 * 298.67559 * 27 14 13 49 49 H 1.08997 * 109.50420 * 183.21610 * 28 27 14 50 50 H 1.08997 * 109.54551 * 63.10460 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1209 0.7652 5 6 2.2363 -1.1211 -0.7648 6 1 1.6114 -1.8590 -1.2678 7 6 3.5292 -0.7813 -1.4607 8 8 3.9720 0.3461 -1.4008 9 7 4.1934 -1.7304 -2.1496 10 6 5.4505 -1.4002 -2.8256 11 6 5.9940 -2.6458 -3.5285 12 6 4.9739 -3.1377 -4.5574 13 6 7.3074 -2.3016 -4.2358 14 7 7.8641 -3.5187 -4.8441 15 6 9.0986 -3.2208 -5.5826 16 6 8.7762 -2.3500 -6.7695 17 8 7.6210 -2.1033 -7.0447 18 7 9.7716 -1.8454 -7.5252 19 6 9.4784 -1.0528 -8.6046 20 1 8.4498 -0.8330 -8.8497 21 6 10.5046 -0.5321 -9.3835 22 7 11.7563 -0.7991 -9.0850 23 14 10.1051 0.5473 -10.8547 24 1 10.0457 1.9675 -10.4251 25 1 11.1597 0.3863 -11.8876 26 1 8.7922 0.1462 -11.4210 27 6 8.0965 -4.5515 -3.8240 28 6 6.7750 -4.8732 -3.1210 29 8 6.2328 -3.6732 -2.5628 30 1 -0.3634 -0.9260 0.4456 31 1 -0.3633 0.8489 0.5793 32 1 -0.3633 0.0772 -1.0247 33 1 1.6111 -1.8586 1.2683 34 1 3.1715 -0.8751 1.2684 35 1 3.8391 -2.6321 -2.1978 36 1 6.1767 -1.0508 -2.0918 37 1 5.2721 -0.6166 -3.5620 38 1 5.3610 -4.0259 -5.0568 39 1 4.0389 -3.3826 -4.0536 40 1 4.7953 -2.3551 -5.2948 41 1 8.0162 -1.8996 -3.5116 42 1 7.1193 -1.5600 -5.0121 43 1 9.7966 -2.6990 -4.9279 44 1 9.5496 -4.1516 -5.9266 45 1 10.6954 -2.0425 -7.3049 46 1 12.4727 -0.4359 -9.6288 47 1 8.4843 -5.4522 -4.2998 48 1 8.8178 -4.1856 -3.0933 49 1 6.9528 -5.5967 -2.3254 50 1 6.0709 -5.2898 -3.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108133574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:54 Heat of formation + Delta-G solvation = -110.661357 kcal Electronic energy + Delta-G solvation = -30119.294063 eV Core-core repulsion = 25953.418736 eV Total energy + Delta-G solvation = -4165.875328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57498 -40.84182 -39.87511 -37.88966 -36.84901 -36.06644 -35.68353 -33.40048 -33.21288 -30.63652 -29.75254 -28.78536 -27.91440 -26.88515 -25.27913 -24.70181 -22.96726 -21.81115 -21.10655 -21.01397 -20.31995 -19.88959 -18.62123 -17.92366 -17.63379 -17.13039 -16.91219 -16.59202 -16.38886 -16.10159 -15.92063 -15.81653 -15.56361 -15.27353 -14.93736 -14.81398 -14.69623 -14.19427 -14.11084 -13.93802 -13.68675 -13.52108 -13.38667 -13.30073 -12.96671 -12.90517 -12.80204 -12.68568 -12.42862 -12.32374 -12.25478 -12.20107 -12.13676 -11.50284 -11.40034 -11.32234 -11.08422 -10.86168 -10.71909 -10.23238 -10.18235 -10.00121 -9.30674 -8.47333 -5.95421 1.36337 1.40210 1.44794 1.52582 2.00591 2.04944 2.26868 2.58864 2.69337 2.85890 3.19436 3.30685 3.62036 3.74209 3.75758 3.79210 3.83724 3.88718 4.02759 4.18316 4.21459 4.27774 4.32592 4.42765 4.44440 4.47038 4.55204 4.56670 4.67997 4.69631 4.76977 4.81695 4.87108 4.88230 4.93125 4.95568 5.04232 5.06749 5.22020 5.30733 5.35944 5.40321 5.43613 5.76320 5.96762 6.06803 6.16868 6.50233 6.59891 7.12656 7.19177 7.56335 8.11809 8.70060 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002328 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.175420 B =12026.842817 C =13451.021821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 H 0.089 0.911 4 C -0.134 4.134 5 C -0.194 4.194 6 H 0.152 0.848 7 C 0.534 3.466 8 O -0.592 6.592 9 N -0.702 5.702 10 C 0.142 3.858 11 C 0.127 3.873 12 C -0.155 4.155 13 C 0.036 3.964 14 N -0.521 5.521 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.609 6.609 18 N -0.575 5.575 19 C -0.329 4.329 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.013 3.987 28 C 0.062 3.938 29 O -0.379 6.379 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.117 0.883 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.106 0.894 48 H 0.044 0.956 49 H 0.130 0.870 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 -9.589 19.313 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.151 4.151 3 H 0.107 0.893 4 C -0.171 4.171 5 C -0.215 4.215 6 H 0.169 0.831 7 C 0.322 3.678 8 O -0.474 6.474 9 N -0.354 5.354 10 C 0.017 3.983 11 C 0.087 3.913 12 C -0.212 4.212 13 C -0.093 4.093 14 N -0.246 5.246 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.495 6.495 18 N -0.213 5.213 19 C -0.458 4.458 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.114 4.114 28 C -0.014 4.014 29 O -0.298 6.298 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.104 0.896 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.062 0.938 49 H 0.147 0.853 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.303 -8.768 18.923 26.471 hybrid contribution 1.616 0.711 -0.865 1.967 sum -14.686 -8.057 18.057 24.631 Atomic orbital electron populations 1.21395 0.90169 1.03426 1.02530 1.22419 0.96708 0.94067 1.01913 0.89252 1.23204 1.02825 1.01364 0.89689 1.22351 0.96129 1.06376 0.96623 0.83087 1.20370 0.85619 0.83953 0.77834 1.90683 1.70179 1.23182 1.63309 1.45681 1.23384 1.14150 1.52147 1.21106 0.86010 0.95136 0.96089 1.21421 0.93620 0.87859 0.88434 1.22118 0.98291 1.02556 0.98229 1.22617 0.95966 0.93358 0.97397 1.61744 1.27148 1.09544 1.26141 1.21777 0.91699 1.00368 0.93579 1.20723 0.85457 0.84494 0.86511 1.90477 1.21218 1.64141 1.73621 1.41943 1.08434 1.44808 1.26128 1.19626 0.94234 1.26443 1.05534 0.90297 1.26022 0.94478 0.99269 1.01659 1.69675 0.99243 1.45975 1.41307 0.84953 0.78035 0.78127 0.77399 1.19879 1.19535 1.19728 1.23002 0.98970 0.96089 0.93374 1.22891 0.92832 0.86552 0.99120 1.87979 1.83838 1.24338 1.33646 0.90455 0.91225 0.91986 0.84707 0.89557 0.74517 0.92005 0.91395 0.91146 0.90417 0.93242 0.94897 0.91065 0.92016 0.86525 0.77133 0.91384 0.87580 0.93769 0.85271 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.19 71.98 0.73 -0.50 16 2 C -0.13 -2.14 5.92 -10.79 -0.06 -2.20 16 3 H 0.09 1.95 7.67 -2.39 -0.02 1.93 16 4 C -0.13 -1.76 9.88 30.60 0.30 -1.46 16 5 C -0.19 -3.16 5.91 -11.54 -0.07 -3.23 16 6 H 0.15 1.58 8.14 -2.39 -0.02 1.57 16 7 C 0.53 13.38 7.61 87.66 0.67 14.05 16 8 O -0.59 -20.52 16.26 -3.02 -0.05 -20.57 16 9 N -0.70 -15.61 5.15 -463.05 -2.39 -17.99 16 10 C 0.14 3.86 4.82 86.38 0.42 4.27 16 11 C 0.13 3.33 0.76 -10.76 -0.01 3.32 16 12 C -0.15 -3.96 8.00 71.98 0.58 -3.38 16 13 C 0.04 1.16 4.00 86.31 0.34 1.50 16 14 N -0.52 -16.00 3.79 -899.76 -3.41 -19.41 16 15 C 0.06 1.92 5.45 85.56 0.47 2.39 16 16 C 0.44 20.64 7.35 87.66 0.64 21.29 16 17 O -0.61 -32.70 14.25 -3.07 -0.04 -32.74 16 18 N -0.58 -29.40 5.29 -306.99 -1.62 -31.02 16 19 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 23 Si 0.99 43.38 29.55 68.60 2.03 45.40 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.01 0.28 5.65 86.31 0.49 0.77 16 28 C 0.06 1.13 6.61 72.01 0.48 1.61 16 29 O -0.38 -8.59 10.04 -148.98 -1.50 -10.09 16 30 H 0.08 0.52 7.90 -2.39 -0.02 0.50 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.13 0.96 8.05 -2.38 -0.02 0.95 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.42 7.00 7.20 -92.71 -0.67 6.33 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 1.92 6.13 -2.39 -0.01 1.91 16 39 H 0.08 1.50 6.86 -2.39 -0.02 1.49 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.07 2.90 6.10 -2.39 -0.01 2.89 16 43 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 44 H 0.12 3.37 8.04 -2.39 -0.02 3.35 16 45 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16 46 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 47 H 0.11 1.87 8.09 -2.39 -0.02 1.85 16 48 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.07 1.21 6.50 -2.39 -0.02 1.19 16 Total: -1.00 -73.72 401.43 -0.88 -74.61 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -0.44 Total: 41.22 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 6.25 Total: 20.27 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -7.14 Total: -118.09 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -1.59 Total: -63.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -73.72 -0.88 -74.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108133574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.056 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds