Wall clock time and date at job start Tue Mar 31 2020 23:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 115.55245 * 2 1 4 4 C 1.53077 * 117.51399 * 145.72286 * 2 1 3 5 5 C 1.52999 * 59.98394 * 107.47621 * 4 2 1 6 6 H 1.09006 * 117.49843 * 252.50346 * 5 4 2 7 7 C 1.50697 * 117.50082 * 107.50430 * 5 4 2 8 8 O 1.21284 * 119.99932 * 291.25429 * 7 5 4 9 9 N 1.34777 * 120.00002 * 111.24572 * 7 5 4 10 10 C 1.46504 * 119.99963 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47225 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.50225 * 304.91438 * 11 10 9 13 13 C 1.53102 * 109.53858 * 184.80631 * 11 10 9 14 14 N 1.47011 * 109.25191 * 183.19363 * 13 11 10 15 15 C 1.46907 * 110.99835 * 182.39417 * 14 13 11 16 16 C 1.50702 * 109.47027 * 170.01406 * 15 14 13 17 17 O 1.21284 * 120.00134 * 353.69975 * 16 15 14 18 18 N 1.34779 * 119.99639 * 173.97144 * 16 15 14 19 19 C 1.37095 * 119.99730 * 179.72881 * 18 16 15 20 20 H 1.08002 * 120.00126 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99808 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99812 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00038 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47063 * 89.99912 * 23 21 19 25 25 H 1.48498 * 109.46820 * 209.99981 * 23 21 19 26 26 H 1.48492 * 109.46987 * 329.99885 * 23 21 19 27 27 C 1.47012 * 110.75662 * 58.61544 * 14 13 11 28 28 C 1.53089 * 109.25793 * 301.38392 * 27 14 13 29 29 O 1.43007 * 109.50555 * 65.00228 * 11 10 9 30 30 H 1.08998 * 109.47280 * 205.67256 * 1 2 3 31 31 H 1.09000 * 109.46953 * 325.67383 * 1 2 3 32 32 H 1.08996 * 109.46998 * 85.66694 * 1 2 3 33 33 H 1.09006 * 117.48680 * 359.97438 * 4 2 1 34 34 H 1.08990 * 117.51378 * 214.95656 * 4 2 1 35 35 H 0.96990 * 120.00254 * 0.02562 * 9 7 5 36 36 H 1.09001 * 109.47125 * 60.00131 * 10 9 7 37 37 H 1.09002 * 109.47216 * 300.01090 * 10 9 7 38 38 H 1.09005 * 109.46518 * 180.08997 * 12 11 10 39 39 H 1.08999 * 109.47118 * 300.08589 * 12 11 10 40 40 H 1.08995 * 109.47079 * 60.08767 * 12 11 10 41 41 H 1.09003 * 109.50762 * 63.26262 * 13 11 10 42 42 H 1.08994 * 109.50932 * 303.12722 * 13 11 10 43 43 H 1.08998 * 109.47012 * 50.01228 * 15 14 13 44 44 H 1.09002 * 109.46564 * 290.01351 * 15 14 13 45 45 H 0.96999 * 120.00018 * 359.72320 * 18 16 15 46 46 H 0.97009 * 120.00153 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.50497 * 61.31592 * 27 14 13 48 48 H 1.09004 * 109.51113 * 181.40084 * 27 14 13 49 49 H 1.09010 * 109.50930 * 176.77934 * 28 27 14 50 50 H 1.08998 * 109.50774 * 296.91145 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2372 -1.1218 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 1.6111 -1.8580 -1.2689 7 6 3.5289 -0.7806 -1.4616 8 8 3.9705 0.3475 -1.4033 9 7 4.1943 -1.7300 -2.1489 10 6 5.4511 -1.3994 -2.8253 11 6 5.9961 -2.6454 -3.5263 12 6 6.1322 -3.7833 -2.5126 13 6 7.3671 -2.3336 -4.1321 14 7 7.8505 -3.5104 -4.8688 15 6 9.1915 -3.2725 -5.4196 16 6 9.7532 -4.5661 -5.9507 17 8 9.1524 -5.6051 -5.7762 18 7 10.9260 -4.5691 -6.6149 19 6 11.4397 -5.7467 -7.0932 20 1 10.9049 -6.6720 -6.9375 21 6 12.6491 -5.7500 -7.7775 22 7 13.1418 -6.8788 -8.2356 23 14 13.5744 -4.1496 -8.0463 24 1 14.5022 -3.9175 -6.9103 25 1 14.3501 -4.2326 -9.3099 26 1 12.6066 -3.0267 -8.1324 27 6 6.9043 -3.8860 -5.9294 28 6 5.5381 -4.1821 -5.3055 29 8 5.0984 -3.0385 -4.5678 30 1 -0.3634 -0.9262 0.4452 31 1 -0.3633 0.8487 0.5795 32 1 -0.3633 0.0776 -1.0247 33 1 1.6119 -1.8595 1.2679 34 1 3.1724 -0.8765 1.2676 35 1 3.8411 -2.6321 -2.1958 36 1 6.1768 -1.0479 -2.0919 37 1 5.2719 -0.6170 -3.5628 38 1 6.5221 -4.6702 -3.0123 39 1 6.8165 -3.4831 -1.7190 40 1 5.1552 -4.0073 -2.0845 41 1 8.0699 -2.0888 -3.3357 42 1 7.2799 -1.4879 -4.8141 43 1 9.8435 -2.8881 -4.6352 44 1 9.1280 -2.5446 -6.2285 45 1 11.4064 -3.7381 -6.7545 46 1 13.9863 -6.8811 -8.7130 47 1 6.8097 -3.0650 -6.6402 48 1 7.2697 -4.7739 -6.4455 49 1 4.8187 -4.4055 -6.0936 50 1 5.6217 -5.0375 -4.6352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108133575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:58 Heat of formation + Delta-G solvation = -79.056627 kcal Electronic energy + Delta-G solvation = -29807.888998 eV Core-core repulsion = 25643.384154 eV Total energy + Delta-G solvation = -4164.504844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62492 -39.90303 -38.39859 -37.20371 -35.66147 -35.01896 -33.92111 -32.37404 -31.71933 -29.49510 -29.25162 -27.77160 -27.09036 -25.18067 -23.96392 -23.75005 -21.98236 -21.17068 -20.34592 -19.42271 -19.33037 -18.36703 -17.83968 -16.81864 -16.24703 -16.04975 -15.82711 -15.44352 -15.28057 -15.00786 -14.92604 -14.48658 -14.40351 -14.08443 -13.79785 -13.70370 -13.54445 -13.21193 -13.15442 -13.05873 -12.68801 -12.59420 -12.42308 -12.18558 -11.97947 -11.83196 -11.81486 -11.58545 -11.32597 -11.30099 -11.04658 -10.76521 -10.63029 -10.49295 -10.42853 -10.06135 -10.01959 -9.71041 -9.57695 -9.30225 -8.61988 -8.22621 -8.08991 -6.35070 -3.86649 2.24190 2.81860 2.99435 3.03941 3.12458 3.42683 3.53915 3.68558 3.75060 4.06722 4.29423 4.36210 4.40923 4.55710 4.63034 4.69448 4.76061 4.80767 4.91314 5.08071 5.16517 5.21589 5.25221 5.30481 5.30739 5.34588 5.40792 5.44836 5.46820 5.54299 5.55739 5.60732 5.63995 5.68903 5.73514 5.77665 5.87629 5.90982 6.00558 6.12698 6.19611 6.26886 6.98299 7.02326 7.15934 7.26506 7.53918 7.98829 8.09796 8.55756 8.90876 9.38144 9.78325 10.77879 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.001886 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.892368 B =14846.453709 C =15176.744139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.192 4.192 6 H 0.123 0.877 7 C 0.542 3.458 8 O -0.545 6.545 9 N -0.716 5.716 10 C 0.137 3.863 11 C 0.110 3.890 12 C -0.170 4.170 13 C 0.032 3.968 14 N -0.508 5.508 15 C 0.043 3.957 16 C 0.452 3.548 17 O -0.559 6.559 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.016 3.984 28 C 0.065 3.935 29 O -0.378 6.378 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.405 0.595 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.034 0.966 48 H 0.110 0.890 49 H 0.097 0.903 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.795 12.883 14.118 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.141 0.859 7 C 0.329 3.671 8 O -0.423 6.423 9 N -0.368 5.368 10 C 0.013 3.987 11 C 0.070 3.930 12 C -0.228 4.228 13 C -0.097 4.097 14 N -0.232 5.232 15 C -0.089 4.089 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.112 4.112 28 C -0.011 4.011 29 O -0.298 6.298 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.241 0.759 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.128 0.872 49 H 0.115 0.885 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.829 12.553 14.428 28.277 hybrid contribution 1.147 1.203 -1.097 1.992 sum -19.682 13.756 13.331 27.465 Atomic orbital electron populations 1.21406 0.92192 1.02257 1.02270 1.22392 0.95247 0.95082 1.01364 0.86497 1.23121 1.03181 1.01564 0.90762 1.22304 0.97761 1.05440 0.95795 0.85859 1.19658 0.84623 0.84598 0.78270 1.90697 1.68703 1.21062 1.61814 1.45837 1.24385 1.13772 1.52772 1.21292 0.85773 0.95760 0.95897 1.21666 0.88993 0.94195 0.88157 1.22291 1.01630 0.99906 0.98925 1.22661 0.95994 0.92280 0.98778 1.61763 1.01339 1.33550 1.26581 1.21923 0.90807 0.96866 0.99255 1.19585 0.83027 0.90017 0.83614 1.90534 1.60034 1.33189 1.60363 1.42222 1.20174 1.09404 1.51153 1.19418 1.04577 0.87348 1.32072 0.86249 1.25035 0.96779 0.97196 0.97065 1.69619 1.20145 1.25268 1.36967 0.86680 0.80604 0.83109 0.79041 1.19582 1.20155 1.19564 1.22918 0.92661 1.02548 0.93087 1.22704 0.94819 0.88314 0.95311 1.87989 1.46284 1.48309 1.47174 0.92308 0.91649 0.91894 0.87730 0.88244 0.75880 0.89889 0.90689 0.89701 0.91461 0.92681 0.89475 0.93889 0.88932 0.93309 0.79722 0.91581 0.94788 0.87222 0.88515 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.19 37.16 0.38 -0.27 16 2 C -0.12 -0.89 5.92 -90.58 -0.54 -1.43 16 3 H 0.12 1.05 7.67 -51.93 -0.40 0.65 16 4 C -0.15 -0.95 9.88 -26.69 -0.26 -1.21 16 5 C -0.19 -1.46 5.91 -91.77 -0.54 -2.00 16 6 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 7 C 0.54 5.77 7.61 -10.99 -0.08 5.69 16 8 O -0.55 -7.81 16.26 5.55 0.09 -7.72 16 9 N -0.72 -6.70 5.19 -60.29 -0.31 -7.01 16 10 C 0.14 1.40 4.85 -4.04 -0.02 1.38 16 11 C 0.11 1.19 0.78 -90.57 -0.07 1.12 16 12 C -0.17 -1.75 7.94 37.16 0.29 -1.46 16 13 C 0.03 0.38 4.35 -3.71 -0.02 0.36 16 14 N -0.51 -7.62 3.79 -235.75 -0.89 -8.51 16 15 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 16 C 0.45 9.86 7.35 -10.98 -0.08 9.78 16 17 O -0.56 -14.25 14.25 5.55 0.08 -14.17 16 18 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 19 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 20 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.36 13.96 55.50 0.77 -24.59 16 23 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 27 C 0.02 0.23 5.30 -3.72 -0.02 0.21 16 28 C 0.06 0.81 6.61 37.20 0.25 1.05 16 29 O -0.38 -4.56 10.23 -35.23 -0.36 -4.92 16 30 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.41 3.16 7.00 -40.82 -0.29 2.88 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.08 6.13 -51.93 -0.32 0.76 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.48 6.58 -51.93 -0.34 0.13 16 41 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 1.97 6.10 -51.93 -0.32 1.66 16 49 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 50 H 0.07 0.84 6.49 -51.93 -0.34 0.50 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -33.47 398.07 -8.49 -41.96 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -8.10 Total: 12.00 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.99 Total: 6.32 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.49 Total: -53.86 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.19 Total: -26.82 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.47 -8.49 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108133575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.097 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds