Wall clock time and date at job start Tue Mar 31 2020 23:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 115.55245 * 2 1 4 4 C 1.53077 * 117.51399 * 145.72286 * 2 1 3 5 5 C 1.52999 * 59.98394 * 107.47621 * 4 2 1 6 6 H 1.09006 * 117.49843 * 252.50346 * 5 4 2 7 7 C 1.50697 * 117.50082 * 107.50430 * 5 4 2 8 8 O 1.21284 * 119.99932 * 291.25429 * 7 5 4 9 9 N 1.34777 * 120.00002 * 111.24572 * 7 5 4 10 10 C 1.46504 * 119.99963 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47225 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.50225 * 304.91438 * 11 10 9 13 13 C 1.53102 * 109.53858 * 184.80631 * 11 10 9 14 14 N 1.47011 * 109.25191 * 183.19363 * 13 11 10 15 15 C 1.46907 * 110.99835 * 182.39417 * 14 13 11 16 16 C 1.50702 * 109.47027 * 170.01406 * 15 14 13 17 17 O 1.21284 * 120.00134 * 353.69975 * 16 15 14 18 18 N 1.34779 * 119.99639 * 173.97144 * 16 15 14 19 19 C 1.37095 * 119.99730 * 179.72881 * 18 16 15 20 20 H 1.08002 * 120.00126 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99808 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99812 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00038 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47063 * 89.99912 * 23 21 19 25 25 H 1.48498 * 109.46820 * 209.99981 * 23 21 19 26 26 H 1.48492 * 109.46987 * 329.99885 * 23 21 19 27 27 C 1.47012 * 110.75662 * 58.61544 * 14 13 11 28 28 C 1.53089 * 109.25793 * 301.38392 * 27 14 13 29 29 O 1.43007 * 109.50555 * 65.00228 * 11 10 9 30 30 H 1.08998 * 109.47280 * 205.67256 * 1 2 3 31 31 H 1.09000 * 109.46953 * 325.67383 * 1 2 3 32 32 H 1.08996 * 109.46998 * 85.66694 * 1 2 3 33 33 H 1.09006 * 117.48680 * 359.97438 * 4 2 1 34 34 H 1.08990 * 117.51378 * 214.95656 * 4 2 1 35 35 H 0.96990 * 120.00254 * 0.02562 * 9 7 5 36 36 H 1.09001 * 109.47125 * 60.00131 * 10 9 7 37 37 H 1.09002 * 109.47216 * 300.01090 * 10 9 7 38 38 H 1.09005 * 109.46518 * 180.08997 * 12 11 10 39 39 H 1.08999 * 109.47118 * 300.08589 * 12 11 10 40 40 H 1.08995 * 109.47079 * 60.08767 * 12 11 10 41 41 H 1.09003 * 109.50762 * 63.26262 * 13 11 10 42 42 H 1.08994 * 109.50932 * 303.12722 * 13 11 10 43 43 H 1.08998 * 109.47012 * 50.01228 * 15 14 13 44 44 H 1.09002 * 109.46564 * 290.01351 * 15 14 13 45 45 H 0.96999 * 120.00018 * 359.72320 * 18 16 15 46 46 H 0.97009 * 120.00153 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.50497 * 61.31592 * 27 14 13 48 48 H 1.09004 * 109.51113 * 181.40084 * 27 14 13 49 49 H 1.09010 * 109.50930 * 176.77934 * 28 27 14 50 50 H 1.08998 * 109.50774 * 296.91145 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2372 -1.1218 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 1.6111 -1.8580 -1.2689 7 6 3.5289 -0.7806 -1.4616 8 8 3.9705 0.3475 -1.4033 9 7 4.1943 -1.7300 -2.1489 10 6 5.4511 -1.3994 -2.8253 11 6 5.9961 -2.6454 -3.5263 12 6 6.1322 -3.7833 -2.5126 13 6 7.3671 -2.3336 -4.1321 14 7 7.8505 -3.5104 -4.8688 15 6 9.1915 -3.2725 -5.4196 16 6 9.7532 -4.5661 -5.9507 17 8 9.1524 -5.6051 -5.7762 18 7 10.9260 -4.5691 -6.6149 19 6 11.4397 -5.7467 -7.0932 20 1 10.9049 -6.6720 -6.9375 21 6 12.6491 -5.7500 -7.7775 22 7 13.1418 -6.8788 -8.2356 23 14 13.5744 -4.1496 -8.0463 24 1 14.5022 -3.9175 -6.9103 25 1 14.3501 -4.2326 -9.3099 26 1 12.6066 -3.0267 -8.1324 27 6 6.9043 -3.8860 -5.9294 28 6 5.5381 -4.1821 -5.3055 29 8 5.0984 -3.0385 -4.5678 30 1 -0.3634 -0.9262 0.4452 31 1 -0.3633 0.8487 0.5795 32 1 -0.3633 0.0776 -1.0247 33 1 1.6119 -1.8595 1.2679 34 1 3.1724 -0.8765 1.2676 35 1 3.8411 -2.6321 -2.1958 36 1 6.1768 -1.0479 -2.0919 37 1 5.2719 -0.6170 -3.5628 38 1 6.5221 -4.6702 -3.0123 39 1 6.8165 -3.4831 -1.7190 40 1 5.1552 -4.0073 -2.0845 41 1 8.0699 -2.0888 -3.3357 42 1 7.2799 -1.4879 -4.8141 43 1 9.8435 -2.8881 -4.6352 44 1 9.1280 -2.5446 -6.2285 45 1 11.4064 -3.7381 -6.7545 46 1 13.9863 -6.8811 -8.7130 47 1 6.8097 -3.0650 -6.6402 48 1 7.2697 -4.7739 -6.4455 49 1 4.8187 -4.4055 -6.0936 50 1 5.6217 -5.0375 -4.6352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108133575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:57 Heat of formation + Delta-G solvation = -105.090059 kcal Electronic energy + Delta-G solvation = -29809.017892 eV Core-core repulsion = 25643.384154 eV Total energy + Delta-G solvation = -4165.633738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56466 -40.84283 -40.02491 -37.86466 -36.85481 -36.00820 -35.79518 -33.75150 -33.28868 -30.69202 -29.74974 -28.94140 -27.92345 -26.72132 -25.09471 -24.73695 -23.01115 -21.77339 -21.26513 -21.05845 -20.31780 -20.19076 -18.60789 -18.02572 -17.39435 -17.15836 -16.88164 -16.76036 -16.52580 -16.23637 -15.79768 -15.67702 -15.39781 -15.21677 -15.02721 -14.79814 -14.73263 -14.31700 -14.11973 -14.01222 -13.91783 -13.75739 -13.54623 -13.13481 -12.99250 -12.89694 -12.85775 -12.60707 -12.42434 -12.31325 -12.24454 -12.22878 -11.98842 -11.51601 -11.39009 -11.32130 -11.06463 -10.84095 -10.75490 -10.30889 -10.22971 -10.12745 -9.30935 -8.41519 -6.01937 1.29399 1.34500 1.43138 1.47639 1.95190 2.04831 2.22058 2.53073 2.62516 2.87312 3.13073 3.16343 3.65110 3.67737 3.79100 3.81544 3.86537 3.90002 3.97917 4.13244 4.20931 4.22866 4.33784 4.40587 4.43904 4.47104 4.51445 4.59752 4.61226 4.66226 4.77450 4.84196 4.88646 4.89300 4.92697 4.95888 5.04579 5.07596 5.22661 5.35182 5.39587 5.44673 5.51883 5.80177 5.94267 6.00644 6.15508 6.51666 6.59382 6.88359 7.21083 7.39853 7.96475 8.75925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.001886 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.892368 B =14846.453709 C =15176.744139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 H 0.093 0.907 4 C -0.136 4.136 5 C -0.196 4.196 6 H 0.146 0.854 7 C 0.538 3.462 8 O -0.588 6.588 9 N -0.707 5.707 10 C 0.143 3.857 11 C 0.114 3.886 12 C -0.165 4.165 13 C 0.032 3.968 14 N -0.524 5.524 15 C 0.053 3.947 16 C 0.453 3.547 17 O -0.602 6.602 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.057 0.943 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.233 1.233 27 C 0.018 3.982 28 C 0.073 3.927 29 O -0.380 6.380 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.124 0.876 44 H 0.075 0.925 45 H 0.388 0.612 46 H 0.279 0.721 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.114 0.886 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.667 15.664 15.339 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 H 0.111 0.889 4 C -0.173 4.173 5 C -0.217 4.217 6 H 0.163 0.837 7 C 0.326 3.674 8 O -0.469 6.469 9 N -0.359 5.359 10 C 0.018 3.982 11 C 0.074 3.926 12 C -0.222 4.222 13 C -0.097 4.097 14 N -0.249 5.249 15 C -0.078 4.078 16 C 0.241 3.759 17 O -0.486 6.486 18 N -0.235 5.235 19 C -0.455 4.455 20 H 0.075 0.925 21 C -0.212 4.212 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.157 1.157 27 C -0.111 4.111 28 C -0.004 4.004 29 O -0.299 6.299 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.108 0.892 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.069 0.931 43 H 0.142 0.858 44 H 0.092 0.908 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.089 0.911 49 H 0.132 0.868 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.734 15.331 15.664 30.867 hybrid contribution 1.325 0.238 -1.426 1.961 sum -20.409 15.569 14.238 29.354 Atomic orbital electron populations 1.21399 0.90494 1.03299 1.02490 1.22417 0.96505 0.94157 1.01893 0.88874 1.23209 1.02954 1.01362 0.89795 1.22364 0.96562 1.06251 0.96555 0.83658 1.20192 0.85331 0.83998 0.77901 1.90676 1.69985 1.22811 1.63431 1.45794 1.23988 1.14063 1.52069 1.21188 0.86290 0.94929 0.95775 1.21686 0.88450 0.94537 0.87921 1.22232 1.02705 0.98548 0.98752 1.22771 0.96812 0.91052 0.99030 1.61708 1.00943 1.35566 1.26662 1.21860 0.91717 0.93308 1.00901 1.20772 0.81849 0.91730 0.81577 1.90524 1.60991 1.35766 1.61296 1.42052 1.20997 1.08578 1.51846 1.18991 1.05264 0.87240 1.34018 0.92477 1.26067 0.97274 1.02082 0.95814 1.69800 1.20995 1.28637 1.38025 0.85397 0.79291 0.77991 0.79046 1.18163 1.20141 1.15681 1.22812 0.93828 1.01022 0.93403 1.22630 0.93915 0.88237 0.95606 1.87994 1.46493 1.48006 1.47413 0.90786 0.91195 0.91992 0.85214 0.89171 0.74810 0.89231 0.91770 0.92191 0.90635 0.91005 0.87619 0.93122 0.85838 0.90753 0.77637 0.91199 0.94190 0.91065 0.86847 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.19 71.98 0.73 -0.28 16 2 C -0.13 -1.74 5.92 -10.77 -0.06 -1.80 16 3 H 0.09 1.69 7.67 -2.38 -0.02 1.67 16 4 C -0.14 -1.44 9.88 30.62 0.30 -1.14 16 5 C -0.20 -2.61 5.91 -11.54 -0.07 -2.68 16 6 H 0.15 1.27 8.14 -2.38 -0.02 1.25 16 7 C 0.54 10.77 7.61 87.66 0.67 11.44 16 8 O -0.59 -16.68 16.26 -3.04 -0.05 -16.73 16 9 N -0.71 -11.87 5.19 -463.05 -2.40 -14.28 16 10 C 0.14 2.62 4.85 86.38 0.42 3.04 16 11 C 0.11 2.22 0.78 -10.76 -0.01 2.21 16 12 C -0.16 -3.09 7.94 71.98 0.57 -2.52 16 13 C 0.03 0.66 4.35 86.32 0.38 1.04 16 14 N -0.52 -14.90 3.79 -899.77 -3.41 -18.30 16 15 C 0.05 1.58 5.45 85.56 0.47 2.05 16 16 C 0.45 19.81 7.35 87.66 0.64 20.45 16 17 O -0.60 -32.00 14.25 -3.04 -0.04 -32.04 16 18 N -0.59 -27.38 5.09 -306.99 -1.56 -28.95 16 19 C -0.33 -18.80 10.16 84.04 0.85 -17.94 16 20 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.93 -55.85 13.96 21.66 0.30 -55.54 16 23 Si 0.96 38.47 27.74 68.60 1.90 40.37 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 25 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 27 C 0.02 0.51 5.30 86.31 0.46 0.97 16 28 C 0.07 1.74 6.61 72.01 0.48 2.22 16 29 O -0.38 -8.43 10.23 -148.98 -1.52 -9.96 16 30 H 0.07 0.41 7.90 -2.39 -0.02 0.39 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.73 8.05 -2.38 -0.02 0.71 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.41 5.45 7.00 -92.72 -0.65 4.80 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.47 6.13 -2.38 -0.01 1.45 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.08 6.58 -2.39 -0.02 1.06 16 41 H 0.11 1.85 8.09 -2.39 -0.02 1.83 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.12 2.97 8.04 -2.39 -0.02 2.95 16 44 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 45 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 46 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 2.66 6.10 -2.39 -0.01 2.65 16 49 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 50 H 0.06 1.52 6.49 -2.39 -0.02 1.50 16 Total: -1.00 -78.92 398.07 -0.77 -79.70 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: -0.28 Total: 38.97 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.29 Total: 16.76 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -7.07 Total: -117.07 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -1.62 Total: -58.72 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.37 kcal Total: -78.92 -0.77 -79.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108133575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.393 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds