Wall clock time and date at job start Tue Mar 31 2020 23:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.77587 * 2 1 4 4 C 1.55151 * 110.72352 * 236.75773 * 2 1 3 5 5 C 1.55132 * 101.48634 * 205.97283 * 4 2 1 6 6 N 1.47419 * 104.72171 * 37.28989 * 5 4 2 7 7 C 1.34782 * 125.64559 * 155.82287 * 6 5 4 8 8 O 1.21348 * 120.00308 * 179.69843 * 7 6 5 9 9 C 1.49450 * 120.00016 * 359.68984 * 7 6 5 10 10 O 1.21352 * 120.00068 * 0.02562 * 9 7 6 11 11 N 1.34773 * 120.00298 * 180.02562 * 9 7 6 12 12 C 1.46493 * 120.00486 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47776 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.51147 * 59.89164 * 13 12 11 15 15 C 1.53296 * 109.51640 * 179.97438 * 13 12 11 16 16 N 1.47155 * 108.38058 * 172.22509 * 15 13 12 17 17 C 1.36939 * 120.97960 * 129.49248 * 16 15 13 18 18 H 1.08001 * 119.99308 * 206.22202 * 17 16 15 19 19 C 1.38809 * 120.00015 * 26.21951 * 17 16 15 20 20 N 1.31615 * 120.00336 * 16.92562 * 19 17 16 21 21 Si 1.86804 * 119.99567 * 196.92708 * 19 17 16 22 22 H 1.48495 * 109.47334 * 60.00001 * 21 19 17 23 23 H 1.48503 * 109.46783 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99643 * 21 19 17 25 25 C 1.47153 * 118.03654 * 309.46260 * 16 15 13 26 26 C 1.53289 * 108.38570 * 50.53781 * 25 16 15 27 27 O 1.42962 * 109.22519 * 307.70009 * 26 25 16 28 28 C 1.47016 * 108.70546 * 335.55641 * 6 5 4 29 29 H 1.08992 * 109.47331 * 298.21947 * 1 2 3 30 30 H 1.09000 * 109.46753 * 58.22274 * 1 2 3 31 31 H 1.09003 * 109.46894 * 178.21742 * 1 2 3 32 32 H 1.09000 * 111.00596 * 324.20701 * 4 2 1 33 33 H 1.08995 * 111.00461 * 88.05704 * 4 2 1 34 34 H 1.09002 * 110.49354 * 278.45206 * 5 4 2 35 35 H 1.08996 * 110.34583 * 156.06463 * 5 4 2 36 36 H 0.96997 * 119.99923 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47422 * 59.99519 * 12 11 9 38 38 H 1.09014 * 109.47084 * 299.99785 * 12 11 9 39 39 H 1.09005 * 109.46757 * 180.10455 * 14 13 12 40 40 H 1.08998 * 109.47711 * 300.10573 * 14 13 12 41 41 H 1.09001 * 109.46907 * 60.10798 * 14 13 12 42 42 H 1.09000 * 109.68225 * 52.50151 * 15 13 12 43 43 H 1.08999 * 109.70905 * 291.96637 * 15 13 12 44 44 H 0.97000 * 119.99805 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.68040 * 290.81521 * 25 16 15 46 46 H 1.09003 * 109.71069 * 170.28073 * 25 16 15 47 47 H 1.09003 * 109.51063 * 67.61791 * 26 25 16 48 48 H 1.09004 * 109.51309 * 187.77021 * 26 25 16 49 49 H 1.09010 * 109.88198 * 120.70493 * 28 6 5 50 50 H 1.09004 * 109.88482 * 241.86722 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0791 -0.7955 -1.2137 5 6 3.4667 -1.2456 -0.6859 6 7 3.2445 -1.5506 0.7392 7 6 3.9924 -2.3833 1.4901 8 8 3.7193 -2.5559 2.6598 9 6 5.1578 -3.0944 0.8821 10 8 5.4311 -2.9216 -0.2875 11 7 5.9053 -3.9275 1.6328 12 6 7.0481 -4.6240 1.0370 13 6 7.7205 -5.4997 2.0962 14 6 6.7154 -6.5249 2.6249 15 6 8.9162 -6.2295 1.4735 16 7 9.6534 -6.9131 2.5480 17 6 9.9839 -8.2380 2.4437 18 1 10.1253 -8.8309 3.3352 19 6 10.1369 -8.8187 1.1923 20 7 10.2970 -8.0592 0.1294 21 14 10.1155 -10.6784 1.0167 22 1 8.8147 -11.2063 1.5006 23 1 10.2967 -11.0428 -0.4114 24 1 11.2177 -11.2642 1.8213 25 6 10.0257 -6.1309 3.7375 26 6 8.7760 -5.4059 4.2499 27 8 8.1789 -4.6790 3.1733 28 6 2.0760 -0.7910 1.2074 29 1 -0.3633 0.4859 0.9054 30 1 -0.3633 0.5412 -0.8736 31 1 -0.3633 -1.0272 -0.0320 32 1 1.4454 -1.6537 -1.4373 33 1 2.1851 -0.1519 -2.0869 34 1 4.1948 -0.4415 -0.7927 35 1 3.8033 -2.1361 -1.2165 36 1 5.6867 -4.0659 2.5676 37 1 7.7644 -3.8928 0.6625 38 1 6.7033 -5.2495 0.2135 39 1 7.1946 -7.1472 3.3807 40 1 5.8653 -6.0057 3.0674 41 1 6.3702 -7.1524 1.8032 42 1 9.5695 -5.5097 0.9804 43 1 8.5625 -6.9617 0.7475 44 1 10.4036 -8.4650 -0.7452 45 1 10.7907 -5.4011 3.4723 46 1 10.4066 -6.7974 4.5113 47 1 8.0641 -6.1357 4.6354 48 1 9.0564 -4.7146 5.0447 49 1 1.3129 -1.4757 1.5777 50 1 2.3740 -0.1021 1.9978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108332251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:04 Heat of formation + Delta-G solvation = -81.859883 kcal Electronic energy + Delta-G solvation = -30691.396465 eV Core-core repulsion = 26526.770063 eV Total energy + Delta-G solvation = -4164.626402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.84049 -39.42052 -38.60722 -37.76493 -35.13891 -34.37921 -33.19640 -31.76198 -31.27066 -29.94787 -27.98117 -27.71824 -26.58768 -25.83007 -24.00579 -23.24000 -22.51379 -21.14027 -20.63653 -19.99909 -18.72968 -17.92242 -17.12737 -16.90173 -16.64458 -15.92257 -15.68526 -15.28018 -15.05310 -14.67226 -14.35048 -14.19539 -14.00307 -13.93517 -13.73323 -13.53324 -13.30780 -13.16292 -13.06536 -12.85329 -12.72034 -12.46908 -12.13884 -11.95019 -11.68000 -11.58627 -11.33669 -11.20783 -11.18597 -11.04055 -10.91331 -10.82753 -10.69337 -10.33184 -10.28472 -10.00084 -9.61207 -9.46453 -9.12094 -9.02118 -8.90876 -8.55294 -6.76144 -5.86566 -3.29697 1.44775 2.23639 3.23320 3.33448 3.40137 3.40495 3.46699 4.06981 4.21877 4.24095 4.41207 4.41919 4.49943 4.91931 4.97541 5.02363 5.09070 5.23142 5.29580 5.31698 5.41768 5.43530 5.48986 5.55602 5.57347 5.67072 5.69568 5.70955 5.87697 5.89963 5.92927 5.94697 5.95924 6.02383 6.13185 6.26682 6.39020 6.49524 6.62220 6.74521 6.81807 6.98993 7.04799 7.29748 7.43037 7.68822 7.71481 7.86064 8.06328 8.31056 9.08854 9.71892 10.29079 11.21515 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.002384 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.352250 B =11740.612445 C =12388.032130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.095 3.905 6 N -0.594 5.594 7 C 0.521 3.479 8 O -0.522 6.522 9 C 0.505 3.495 10 O -0.523 6.523 11 N -0.682 5.682 12 C 0.137 3.863 13 C 0.077 3.923 14 C -0.164 4.164 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.414 0.586 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.097 0.903 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 14.877 -0.221 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.171 4.171 5 C -0.027 4.027 6 N -0.329 5.329 7 C 0.304 3.696 8 O -0.398 6.398 9 C 0.285 3.715 10 O -0.401 6.401 11 N -0.335 5.335 12 C 0.014 3.986 13 C 0.036 3.964 14 C -0.222 4.222 15 C 0.034 3.966 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.208 1.208 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.303 6.303 28 C -0.014 4.014 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.252 0.748 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.053 14.948 -0.541 22.683 hybrid contribution 0.082 -1.242 0.329 1.287 sum -16.972 13.706 -0.212 21.816 Atomic orbital electron populations 1.21754 0.93577 1.02376 1.02232 1.22259 0.96509 0.99466 0.94269 0.89490 1.23004 0.96006 1.00409 0.97646 1.22746 0.96951 1.02971 0.80008 1.48248 1.29204 1.42999 1.12428 1.19990 0.83684 0.80011 0.85886 1.90764 1.70197 1.63056 1.15766 1.19877 0.83902 0.81061 0.86680 1.90708 1.70078 1.63457 1.15810 1.45817 1.29249 1.43188 1.15209 1.21548 0.86164 0.95476 0.95382 1.22568 0.96020 0.90205 0.87611 1.22230 0.97959 0.99344 1.02635 1.21293 0.88948 0.95470 0.90930 1.43983 1.62869 1.07560 1.16948 1.19121 1.42825 0.84231 0.92175 0.91435 1.25035 1.00031 0.98049 0.96406 1.70000 1.52027 1.33902 0.98686 0.86353 0.78129 0.85389 0.76807 1.20980 1.21544 1.20847 1.21605 0.94201 0.94655 0.91255 1.23051 0.95687 0.95690 0.88757 1.87820 1.78695 1.34046 1.29769 1.22142 0.87410 0.94712 0.97088 0.92219 0.91950 0.92229 0.90341 0.89560 0.90819 0.87746 0.74843 0.90188 0.89419 0.90648 0.93746 0.91804 0.95175 0.88458 0.93369 0.95611 0.91999 0.93285 0.90082 0.90834 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.13 37.16 0.34 -0.35 16 2 C -0.11 -0.66 3.54 -88.79 -0.31 -0.97 16 3 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -0.87 6.54 -24.47 -0.16 -1.03 16 5 C 0.10 0.92 6.08 -2.41 -0.01 0.91 16 6 N -0.59 -6.90 3.32 -170.89 -0.57 -7.47 16 7 C 0.52 7.52 7.91 -11.58 -0.09 7.43 16 8 O -0.52 -8.55 16.80 5.50 0.09 -8.45 16 9 C 0.50 7.75 7.86 -11.59 -0.09 7.66 16 10 O -0.52 -8.60 13.77 5.49 0.08 -8.53 16 11 N -0.68 -10.57 5.15 -60.73 -0.31 -10.88 16 12 C 0.14 2.32 4.82 -4.05 -0.02 2.30 16 13 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 14 C -0.16 -2.87 7.92 37.16 0.29 -2.58 16 15 C 0.16 3.68 4.11 -3.53 -0.01 3.67 16 16 N -0.59 -14.25 2.57 -171.82 -0.44 -14.70 16 17 C -0.25 -6.71 9.65 -15.06 -0.15 -6.85 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.37 11.14 55.49 0.62 -24.75 16 21 Si 0.90 21.13 29.59 -169.99 -5.03 16.11 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.11 2.24 6.73 -3.54 -0.02 2.21 16 26 C 0.05 0.81 6.60 37.31 0.25 1.05 16 27 O -0.38 -7.19 9.99 -35.23 -0.35 -7.54 16 28 C 0.11 0.97 6.46 -3.07 -0.02 0.96 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 32 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.18 6.14 -51.93 -0.32 0.86 16 36 H 0.41 6.33 6.67 -40.82 -0.27 6.06 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 39 H 0.07 1.43 6.11 -51.93 -0.32 1.11 16 40 H 0.04 0.68 6.86 -51.93 -0.36 0.33 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 2.45 6.13 -51.93 -0.32 2.13 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 47 H 0.05 0.84 6.25 -51.93 -0.32 0.52 16 48 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.07 0.67 7.82 -51.92 -0.41 0.26 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -30.69 390.73 -8.39 -39.08 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.19 Total: 5.46 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -0.17 Total: 15.78 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.70 Total: -57.80 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.18 Total: -24.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.69 -8.39 -39.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108332251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.783 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds