Wall clock time and date at job start Tue Mar 31 2020 23:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.77587 * 2 1 4 4 C 1.55151 * 110.72352 * 236.75773 * 2 1 3 5 5 C 1.55132 * 101.48634 * 205.97283 * 4 2 1 6 6 N 1.47419 * 104.72171 * 37.28989 * 5 4 2 7 7 C 1.34782 * 125.64559 * 155.82287 * 6 5 4 8 8 O 1.21348 * 120.00308 * 179.69843 * 7 6 5 9 9 C 1.49450 * 120.00016 * 359.68984 * 7 6 5 10 10 O 1.21352 * 120.00068 * 0.02562 * 9 7 6 11 11 N 1.34773 * 120.00298 * 180.02562 * 9 7 6 12 12 C 1.46493 * 120.00486 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47776 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.51147 * 59.89164 * 13 12 11 15 15 C 1.53296 * 109.51640 * 179.97438 * 13 12 11 16 16 N 1.47155 * 108.38058 * 172.22509 * 15 13 12 17 17 C 1.36939 * 120.97960 * 129.49248 * 16 15 13 18 18 H 1.08001 * 119.99308 * 206.22202 * 17 16 15 19 19 C 1.38809 * 120.00015 * 26.21951 * 17 16 15 20 20 N 1.31615 * 120.00336 * 16.92562 * 19 17 16 21 21 Si 1.86804 * 119.99567 * 196.92708 * 19 17 16 22 22 H 1.48495 * 109.47334 * 60.00001 * 21 19 17 23 23 H 1.48503 * 109.46783 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99643 * 21 19 17 25 25 C 1.47153 * 118.03654 * 309.46260 * 16 15 13 26 26 C 1.53289 * 108.38570 * 50.53781 * 25 16 15 27 27 O 1.42962 * 109.22519 * 307.70009 * 26 25 16 28 28 C 1.47016 * 108.70546 * 335.55641 * 6 5 4 29 29 H 1.08992 * 109.47331 * 298.21947 * 1 2 3 30 30 H 1.09000 * 109.46753 * 58.22274 * 1 2 3 31 31 H 1.09003 * 109.46894 * 178.21742 * 1 2 3 32 32 H 1.09000 * 111.00596 * 324.20701 * 4 2 1 33 33 H 1.08995 * 111.00461 * 88.05704 * 4 2 1 34 34 H 1.09002 * 110.49354 * 278.45206 * 5 4 2 35 35 H 1.08996 * 110.34583 * 156.06463 * 5 4 2 36 36 H 0.96997 * 119.99923 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47422 * 59.99519 * 12 11 9 38 38 H 1.09014 * 109.47084 * 299.99785 * 12 11 9 39 39 H 1.09005 * 109.46757 * 180.10455 * 14 13 12 40 40 H 1.08998 * 109.47711 * 300.10573 * 14 13 12 41 41 H 1.09001 * 109.46907 * 60.10798 * 14 13 12 42 42 H 1.09000 * 109.68225 * 52.50151 * 15 13 12 43 43 H 1.08999 * 109.70905 * 291.96637 * 15 13 12 44 44 H 0.97000 * 119.99805 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.68040 * 290.81521 * 25 16 15 46 46 H 1.09003 * 109.71069 * 170.28073 * 25 16 15 47 47 H 1.09003 * 109.51063 * 67.61791 * 26 25 16 48 48 H 1.09004 * 109.51309 * 187.77021 * 26 25 16 49 49 H 1.09010 * 109.88198 * 120.70493 * 28 6 5 50 50 H 1.09004 * 109.88482 * 241.86722 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0791 -0.7955 -1.2137 5 6 3.4667 -1.2456 -0.6859 6 7 3.2445 -1.5506 0.7392 7 6 3.9924 -2.3833 1.4901 8 8 3.7193 -2.5559 2.6598 9 6 5.1578 -3.0944 0.8821 10 8 5.4311 -2.9216 -0.2875 11 7 5.9053 -3.9275 1.6328 12 6 7.0481 -4.6240 1.0370 13 6 7.7205 -5.4997 2.0962 14 6 6.7154 -6.5249 2.6249 15 6 8.9162 -6.2295 1.4735 16 7 9.6534 -6.9131 2.5480 17 6 9.9839 -8.2380 2.4437 18 1 10.1253 -8.8309 3.3352 19 6 10.1369 -8.8187 1.1923 20 7 10.2970 -8.0592 0.1294 21 14 10.1155 -10.6784 1.0167 22 1 8.8147 -11.2063 1.5006 23 1 10.2967 -11.0428 -0.4114 24 1 11.2177 -11.2642 1.8213 25 6 10.0257 -6.1309 3.7375 26 6 8.7760 -5.4059 4.2499 27 8 8.1789 -4.6790 3.1733 28 6 2.0760 -0.7910 1.2074 29 1 -0.3633 0.4859 0.9054 30 1 -0.3633 0.5412 -0.8736 31 1 -0.3633 -1.0272 -0.0320 32 1 1.4454 -1.6537 -1.4373 33 1 2.1851 -0.1519 -2.0869 34 1 4.1948 -0.4415 -0.7927 35 1 3.8033 -2.1361 -1.2165 36 1 5.6867 -4.0659 2.5676 37 1 7.7644 -3.8928 0.6625 38 1 6.7033 -5.2495 0.2135 39 1 7.1946 -7.1472 3.3807 40 1 5.8653 -6.0057 3.0674 41 1 6.3702 -7.1524 1.8032 42 1 9.5695 -5.5097 0.9804 43 1 8.5625 -6.9617 0.7475 44 1 10.4036 -8.4650 -0.7452 45 1 10.7907 -5.4011 3.4723 46 1 10.4066 -6.7974 4.5113 47 1 8.0641 -6.1357 4.6354 48 1 9.0564 -4.7146 5.0447 49 1 1.3129 -1.4757 1.5777 50 1 2.3740 -0.1021 1.9978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108332251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:03 Heat of formation + Delta-G solvation = -102.369419 kcal Electronic energy + Delta-G solvation = -30692.285825 eV Core-core repulsion = 26526.770063 eV Total energy + Delta-G solvation = -4165.515762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95493 -40.80703 -39.79581 -38.77978 -36.64467 -36.04009 -33.98131 -33.26857 -33.14942 -30.62600 -29.61185 -28.74186 -27.99774 -27.33146 -25.09488 -24.87795 -23.55547 -22.65419 -21.38076 -21.04772 -20.26920 -19.09364 -18.80051 -18.12280 -17.63648 -17.34918 -17.01624 -16.71915 -16.37132 -16.13574 -15.82948 -15.58213 -15.28357 -15.16753 -14.82595 -14.67810 -14.54636 -14.43251 -14.10699 -14.01869 -13.71675 -13.46996 -13.41025 -13.19966 -12.94162 -12.77004 -12.73112 -12.65452 -12.54697 -12.44966 -12.18083 -11.97991 -11.95113 -11.85065 -11.69177 -11.52269 -11.16200 -10.80661 -10.62127 -10.50035 -10.35293 -9.88748 -8.71415 -7.89275 -5.35586 0.27090 1.15643 1.47207 1.49177 1.55755 2.05280 2.37018 2.49694 2.76417 3.20219 3.27109 3.48042 3.57204 3.61019 3.87808 3.90288 3.97342 4.08148 4.28155 4.36378 4.39903 4.44685 4.52118 4.56217 4.57501 4.61353 4.69186 4.73404 4.77556 4.83581 4.92332 4.94085 5.00051 5.04648 5.09341 5.09637 5.13319 5.19009 5.20450 5.31332 5.33318 5.45522 5.52961 5.62092 5.94175 6.15877 6.28970 6.35271 6.57653 6.85668 7.07728 7.76415 8.30624 9.16430 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.002384 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.352250 B =11740.612445 C =12388.032130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.100 0.900 4 C -0.123 4.123 5 C 0.088 3.912 6 N -0.589 5.589 7 C 0.519 3.481 8 O -0.547 6.547 9 C 0.505 3.495 10 O -0.536 6.536 11 N -0.678 5.678 12 C 0.147 3.853 13 C 0.091 3.909 14 C -0.155 4.155 15 C 0.169 3.831 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.276 1.276 25 C 0.103 3.897 26 C 0.052 3.948 27 O -0.387 6.387 28 C 0.100 3.900 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.417 0.583 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.060 0.940 42 H -0.002 1.002 43 H 0.071 0.929 44 H 0.251 0.749 45 H 0.015 0.985 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.116 0.884 49 H 0.072 0.928 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.217 15.869 0.461 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.161 4.161 5 C -0.033 4.033 6 N -0.322 5.322 7 C 0.302 3.698 8 O -0.425 6.425 9 C 0.286 3.714 10 O -0.414 6.414 11 N -0.331 5.331 12 C 0.024 3.976 13 C 0.049 3.951 14 C -0.213 4.213 15 C 0.042 3.958 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.794 3.206 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.202 1.202 25 C -0.022 4.022 26 C -0.026 4.026 27 O -0.307 6.307 28 C -0.021 4.021 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.016 0.984 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.082 15.973 0.153 24.886 hybrid contribution 0.747 -1.477 0.121 1.659 sum -18.336 14.496 0.274 23.375 Atomic orbital electron populations 1.21743 0.92294 1.02436 1.03174 1.22267 0.97387 0.99456 0.92347 0.88158 1.23003 0.93724 1.00896 0.98472 1.22886 0.99230 1.02351 0.78847 1.48425 1.28989 1.41704 1.13103 1.19726 0.83710 0.80635 0.85750 1.90746 1.70916 1.64311 1.16576 1.20132 0.84080 0.80752 0.86445 1.90708 1.70500 1.63831 1.16386 1.45675 1.28808 1.43267 1.15306 1.21292 0.86472 0.95078 0.94797 1.22255 0.94525 0.90482 0.87793 1.22131 0.98155 0.98828 1.02164 1.21058 0.89911 0.94222 0.90614 1.44229 1.63370 1.07493 1.17969 1.19451 1.41786 0.85471 0.92321 0.91037 1.25762 1.00448 1.01915 0.96223 1.70160 1.53647 1.35365 0.98835 0.85366 0.78324 0.80687 0.76221 1.20251 1.22200 1.20226 1.21796 0.95658 0.94512 0.90235 1.23118 0.94156 0.96458 0.88840 1.87831 1.78651 1.34279 1.29897 1.22417 0.86365 0.94704 0.98596 0.91706 0.90579 0.92665 0.90233 0.87265 0.90412 0.89548 0.74476 0.91210 0.89420 0.91876 0.91255 0.92132 0.98370 0.91091 0.93963 0.96741 0.90979 0.92344 0.86602 0.90968 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.13 71.98 0.66 -0.31 16 2 C -0.10 -0.93 3.54 -9.61 -0.03 -0.96 16 3 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.32 6.54 32.06 0.21 -1.11 16 5 C 0.09 1.61 6.08 86.93 0.53 2.13 16 6 N -0.59 -13.12 3.32 -812.93 -2.70 -15.83 16 7 C 0.52 14.73 7.91 87.27 0.69 15.42 16 8 O -0.55 -17.60 16.80 -3.24 -0.05 -17.66 16 9 C 0.51 15.42 7.86 87.27 0.69 16.11 16 10 O -0.54 -17.69 13.77 -3.25 -0.04 -17.73 16 11 N -0.68 -20.73 5.15 -464.42 -2.39 -23.12 16 12 C 0.15 5.03 4.82 86.38 0.42 5.44 16 13 C 0.09 3.37 0.76 -10.70 -0.01 3.37 16 14 C -0.16 -5.30 7.92 71.98 0.57 -4.73 16 15 C 0.17 8.00 4.11 86.35 0.36 8.35 16 16 N -0.61 -29.67 2.57 -697.53 -1.79 -31.47 16 17 C -0.26 -13.85 9.65 84.03 0.81 -13.04 16 18 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 19 C -0.05 -2.61 4.95 84.86 0.42 -2.19 16 20 N -0.93 -54.19 11.14 21.65 0.24 -53.95 16 21 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.10 4.19 6.73 86.35 0.58 4.77 16 26 C 0.05 1.71 6.60 72.08 0.48 2.19 16 27 O -0.39 -14.09 9.99 -148.98 -1.49 -15.57 16 28 C 0.10 1.65 6.46 86.73 0.56 2.21 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.45 8.13 -2.39 -0.02 0.43 16 32 H 0.08 0.87 8.04 -2.39 -0.02 0.85 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.92 6.14 -2.39 -0.01 1.90 16 36 H 0.42 12.33 6.67 -92.71 -0.62 11.71 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 39 H 0.06 2.32 6.11 -2.38 -0.01 2.31 16 40 H 0.07 2.01 6.86 -2.39 -0.02 2.00 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.07 3.73 6.13 -2.39 -0.01 3.72 16 44 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 47 H 0.06 1.86 6.25 -2.39 -0.01 1.85 16 48 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 49 H 0.07 1.22 7.82 -2.38 -0.02 1.20 16 50 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.11 390.73 1.04 -66.07 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.32 Total: 25.67 kcal Atomic # 6 Polarization: 30.74 SS G_CDS: 6.92 Total: 37.66 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.64 Total: -124.36 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.59 Total: -50.96 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -67.11 1.04 -66.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108332251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.300 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds