Wall clock time and date at job start Tue Mar 31 2020 23:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.89116 * 2 1 4 4 C 1.55158 * 111.00589 * 123.92024 * 2 1 3 5 5 C 1.54338 * 103.02197 * 153.37750 * 4 2 1 6 6 N 1.47021 * 107.26519 * 338.14586 * 5 4 2 7 7 C 1.34774 * 125.64482 * 178.84617 * 6 5 4 8 8 O 1.21349 * 120.00245 * 179.68976 * 7 6 5 9 9 C 1.49451 * 120.00159 * 359.69197 * 7 6 5 10 10 O 1.21350 * 120.00258 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00159 * 180.02562 * 9 7 6 12 12 C 1.46502 * 120.00107 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46957 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.51455 * 60.10055 * 13 12 11 15 15 C 1.53714 * 109.44379 * 180.38989 * 13 12 11 16 16 N 1.47149 * 108.16662 * 172.37233 * 15 13 12 17 17 C 1.36928 * 120.98310 * 129.42509 * 16 15 13 18 18 H 1.07993 * 120.00321 * 333.50347 * 17 16 15 19 19 C 1.38816 * 119.99796 * 153.22288 * 17 16 15 20 20 N 1.31619 * 120.00066 * 343.48676 * 19 17 16 21 21 Si 1.86798 * 120.00212 * 163.48629 * 19 17 16 22 22 H 1.48504 * 109.47327 * 89.99946 * 21 19 17 23 23 H 1.48500 * 109.47252 * 210.00446 * 21 19 17 24 24 H 1.48509 * 109.47053 * 330.00041 * 21 19 17 25 25 C 1.47155 * 118.03225 * 309.15830 * 16 15 13 26 26 C 1.53300 * 108.38736 * 50.78431 * 25 16 15 27 27 O 1.42967 * 109.50963 * 299.99633 * 13 12 11 28 28 C 1.47419 * 108.70293 * 358.58257 * 6 5 4 29 29 H 1.09000 * 109.47598 * 182.42729 * 1 2 3 30 30 H 1.09000 * 109.47347 * 302.43088 * 1 2 3 31 31 H 1.09004 * 109.47304 * 62.42797 * 1 2 3 32 32 H 1.08993 * 110.72280 * 271.94286 * 4 2 1 33 33 H 1.09004 * 110.71562 * 35.03526 * 4 2 1 34 34 H 1.08996 * 109.98947 * 218.66708 * 5 4 2 35 35 H 1.09006 * 109.77228 * 97.50078 * 5 4 2 36 36 H 0.97003 * 120.00309 * 359.97438 * 11 9 7 37 37 H 1.09002 * 109.47073 * 60.00220 * 12 11 9 38 38 H 1.08995 * 109.47064 * 299.99902 * 12 11 9 39 39 H 1.09004 * 109.47318 * 299.89698 * 14 13 12 40 40 H 1.08998 * 109.47231 * 59.89859 * 14 13 12 41 41 H 1.09005 * 109.47494 * 179.89963 * 14 13 12 42 42 H 1.09004 * 109.83730 * 52.68606 * 15 13 12 43 43 H 1.08997 * 109.74166 * 292.00129 * 15 13 12 44 44 H 0.97001 * 120.00066 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.68006 * 170.50417 * 25 16 15 46 46 H 1.09002 * 109.68357 * 291.06249 * 25 16 15 47 47 H 1.08999 * 109.51029 * 67.61948 * 26 25 16 48 48 H 1.08995 * 109.51337 * 187.77387 * 26 25 16 49 49 H 1.09003 * 110.36504 * 143.19936 * 28 6 5 50 50 H 1.09004 * 110.36520 * 265.51732 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 1.2020 5 6 3.4657 -1.2797 0.6955 6 7 3.4271 -1.2428 -0.7738 7 6 4.4476 -1.5611 -1.5945 8 8 4.3007 -1.4994 -2.7975 9 6 5.7603 -1.9900 -1.0231 10 8 5.9074 -2.0514 0.1799 11 7 6.7810 -2.3078 -1.8439 12 6 8.0675 -2.7288 -1.2837 13 6 9.0457 -3.0281 -2.4216 14 6 9.2478 -1.7687 -3.2663 15 6 10.3923 -3.4792 -1.8334 16 7 11.2474 -3.9341 -2.9411 17 6 12.5260 -3.4650 -3.0831 18 1 12.7911 -2.4933 -2.6936 19 6 13.4830 -4.2411 -3.7225 20 7 13.2741 -5.5282 -3.9018 21 14 15.0673 -3.4588 -4.3285 22 1 16.0923 -3.5215 -3.2558 23 1 15.5560 -4.1923 -5.5237 24 1 14.8131 -2.0405 -4.6880 25 6 10.6900 -4.9126 -3.8884 26 6 9.3307 -4.3958 -4.3734 27 8 8.5185 -4.0737 -3.2418 28 6 2.0853 -0.8062 -1.2005 29 1 -0.3634 -1.0267 0.0435 30 1 -0.3634 0.5511 0.8674 31 1 -0.3634 0.4757 -0.9110 32 1 2.1921 -0.1707 2.0796 33 1 1.4450 -1.6619 1.4224 34 1 3.6600 -2.2968 1.0358 35 1 4.2424 -0.6089 1.0629 36 1 6.6636 -2.2584 -2.8055 37 1 7.9253 -3.6258 -0.6810 38 1 8.4703 -1.9315 -0.6592 39 1 8.2917 -1.4545 -3.6849 40 1 9.6498 -0.9720 -2.6404 41 1 9.9461 -1.9821 -4.0757 42 1 10.2337 -4.2982 -1.1317 43 1 10.8688 -2.6434 -1.3211 44 1 13.9430 -6.0705 -4.3483 45 1 11.3637 -5.0264 -4.7376 46 1 10.5608 -5.8735 -3.3902 47 1 9.4766 -3.5037 -4.9825 48 1 8.8389 -5.1664 -4.9670 49 1 2.1560 -0.1713 -2.0837 50 1 1.4519 -1.6699 -1.4030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108332254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:15 Heat of formation + Delta-G solvation = -83.370910 kcal Electronic energy + Delta-G solvation = -30449.084085 eV Core-core repulsion = 26284.392160 eV Total energy + Delta-G solvation = -4164.691925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.89896 -39.47665 -38.64816 -37.81673 -35.21971 -34.33995 -33.25725 -32.04637 -30.88518 -30.02794 -28.19804 -27.78770 -26.68731 -25.78691 -24.08417 -23.14779 -22.50962 -21.18800 -20.78933 -20.04014 -18.71899 -17.97822 -17.08359 -16.92623 -16.66896 -16.01757 -15.73389 -15.44132 -15.09501 -14.59478 -14.50823 -14.28914 -14.09786 -13.90748 -13.74852 -13.57156 -13.42420 -13.07089 -13.01252 -12.89450 -12.81836 -12.50804 -12.22171 -12.05200 -11.75306 -11.62274 -11.40273 -11.15412 -11.13278 -11.09905 -11.05799 -10.86566 -10.65046 -10.44047 -10.27945 -9.99184 -9.68028 -9.47709 -9.18807 -9.04942 -8.97423 -8.54354 -6.75261 -5.85824 -3.29470 1.37851 2.16733 3.15998 3.32719 3.37551 3.40387 3.42081 4.00738 4.18820 4.19413 4.37289 4.40368 4.44424 4.87822 4.90756 4.99409 5.00936 5.16988 5.24265 5.28200 5.32882 5.36575 5.41132 5.46981 5.53076 5.54979 5.64465 5.67751 5.73773 5.79618 5.88732 5.91852 6.04094 6.07279 6.15160 6.27151 6.38484 6.40319 6.49418 6.66214 6.74601 6.92102 7.10342 7.22472 7.51319 7.63372 7.69538 7.86521 7.98205 8.31669 9.09767 9.72477 10.29570 11.22035 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.002080 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.653114 B =13457.617789 C =13640.608116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.107 3.893 6 N -0.595 5.595 7 C 0.521 3.479 8 O -0.521 6.521 9 C 0.505 3.495 10 O -0.524 6.524 11 N -0.683 5.683 12 C 0.136 3.864 13 C 0.087 3.913 14 C -0.168 4.168 15 C 0.129 3.871 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.140 3.860 26 C 0.036 3.964 27 O -0.384 6.384 28 C 0.108 3.892 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.416 0.584 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.064 0.936 44 H 0.255 0.745 45 H 0.094 0.906 46 H 0.027 0.973 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.211 10.025 7.242 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.170 4.170 5 C -0.015 4.015 6 N -0.330 5.330 7 C 0.305 3.695 8 O -0.396 6.396 9 C 0.285 3.715 10 O -0.401 6.401 11 N -0.336 5.336 12 C 0.013 3.987 13 C 0.046 3.954 14 C -0.225 4.225 15 C 0.002 3.998 16 N -0.313 5.313 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.014 3.986 26 C -0.042 4.042 27 O -0.303 6.303 28 C -0.014 4.014 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.253 0.747 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.046 0.954 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.108 9.763 7.347 26.140 hybrid contribution 1.140 0.307 -0.833 1.445 sum -21.969 10.069 6.514 25.029 Atomic orbital electron populations 1.21694 0.93417 1.02395 1.02333 1.22384 0.96415 0.99511 0.94321 0.89516 1.22833 0.95703 1.00355 0.98106 1.22202 0.97762 1.03075 0.78496 1.48233 1.11743 1.64973 1.08019 1.19973 0.84676 0.78792 0.86094 1.90775 1.82792 1.52001 1.14057 1.19882 0.85071 0.79590 0.86949 1.90738 1.82840 1.52357 1.14143 1.45767 1.11547 1.64878 1.11365 1.21548 0.81061 1.00649 0.95474 1.22293 0.94324 0.88141 0.90691 1.22261 1.01523 0.97023 1.01723 1.21498 0.89245 0.98023 0.91055 1.44019 1.11198 1.50177 1.25877 1.19158 0.85323 0.98513 1.35275 0.91385 1.25055 0.97635 0.94820 1.02155 1.70028 1.35318 1.03903 1.45398 0.86275 0.83352 0.78666 0.78335 1.21342 1.21521 1.20453 1.21442 0.90925 0.91002 0.95183 1.23371 0.94189 0.99201 0.87417 1.87823 1.48225 1.54718 1.39539 1.22434 0.82199 0.98692 0.98116 0.92180 0.91922 0.92138 0.89718 0.90356 0.90244 0.90172 0.74684 0.90203 0.89644 0.93346 0.92031 0.90196 0.95273 0.91758 0.93508 0.88783 0.95448 0.93530 0.90122 0.89974 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 9.29 37.15 0.35 -0.24 16 2 C -0.11 -0.61 3.64 -88.47 -0.32 -0.94 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -0.76 6.42 -24.89 -0.16 -0.92 16 5 C 0.11 0.96 5.49 -3.06 -0.02 0.94 16 6 N -0.59 -6.48 3.33 -171.02 -0.57 -7.05 16 7 C 0.52 7.14 7.91 -11.59 -0.09 7.05 16 8 O -0.52 -8.20 16.73 5.50 0.09 -8.11 16 9 C 0.51 7.26 7.86 -11.59 -0.09 7.16 16 10 O -0.52 -8.03 14.12 5.50 0.08 -7.95 16 11 N -0.68 -9.83 5.14 -60.73 -0.31 -10.14 16 12 C 0.14 2.04 4.82 -4.04 -0.02 2.02 16 13 C 0.09 1.50 0.76 -90.25 -0.07 1.43 16 14 C -0.17 -2.71 7.93 37.15 0.29 -2.42 16 15 C 0.13 2.62 5.44 -3.32 -0.02 2.61 16 16 N -0.59 -14.25 2.56 -171.57 -0.44 -14.69 16 17 C -0.25 -6.70 9.65 -15.06 -0.15 -6.85 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 20 N -0.90 -25.62 11.13 55.49 0.62 -25.01 16 21 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.14 3.28 5.44 -3.53 -0.02 3.26 16 26 C 0.04 0.69 6.60 37.31 0.25 0.93 16 27 O -0.38 -7.20 9.97 -35.23 -0.35 -7.55 16 28 C 0.11 0.89 6.37 -2.53 -0.02 0.87 16 29 H 0.06 0.24 8.11 -51.93 -0.42 -0.18 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.40 8.01 -51.93 -0.42 -0.02 16 34 H 0.08 0.78 7.71 -51.93 -0.40 0.37 16 35 H 0.08 0.77 7.57 -51.93 -0.39 0.38 16 36 H 0.42 6.03 6.68 -40.82 -0.27 5.76 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.70 6.88 -51.93 -0.36 0.35 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.48 6.12 -51.93 -0.32 1.16 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.87 6.25 -51.93 -0.32 0.55 16 48 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 50 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -30.98 391.59 -8.43 -39.41 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.25 Total: 4.12 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -0.17 Total: 14.89 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.70 Total: -56.89 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.18 Total: -23.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.98 -8.43 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108332254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.966 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds