Wall clock time and date at job start Tue Mar 31 2020 23:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.89116 * 2 1 4 4 C 1.55158 * 111.00589 * 123.92024 * 2 1 3 5 5 C 1.54338 * 103.02197 * 153.37750 * 4 2 1 6 6 N 1.47021 * 107.26519 * 338.14586 * 5 4 2 7 7 C 1.34774 * 125.64482 * 178.84617 * 6 5 4 8 8 O 1.21349 * 120.00245 * 179.68976 * 7 6 5 9 9 C 1.49451 * 120.00159 * 359.69197 * 7 6 5 10 10 O 1.21350 * 120.00258 * 359.97438 * 9 7 6 11 11 N 1.34774 * 120.00159 * 180.02562 * 9 7 6 12 12 C 1.46502 * 120.00107 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46957 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.51455 * 60.10055 * 13 12 11 15 15 C 1.53714 * 109.44379 * 180.38989 * 13 12 11 16 16 N 1.47149 * 108.16662 * 172.37233 * 15 13 12 17 17 C 1.36928 * 120.98310 * 129.42509 * 16 15 13 18 18 H 1.07993 * 120.00321 * 333.50347 * 17 16 15 19 19 C 1.38816 * 119.99796 * 153.22288 * 17 16 15 20 20 N 1.31619 * 120.00066 * 343.48676 * 19 17 16 21 21 Si 1.86798 * 120.00212 * 163.48629 * 19 17 16 22 22 H 1.48504 * 109.47327 * 89.99946 * 21 19 17 23 23 H 1.48500 * 109.47252 * 210.00446 * 21 19 17 24 24 H 1.48509 * 109.47053 * 330.00041 * 21 19 17 25 25 C 1.47155 * 118.03225 * 309.15830 * 16 15 13 26 26 C 1.53300 * 108.38736 * 50.78431 * 25 16 15 27 27 O 1.42967 * 109.50963 * 299.99633 * 13 12 11 28 28 C 1.47419 * 108.70293 * 358.58257 * 6 5 4 29 29 H 1.09000 * 109.47598 * 182.42729 * 1 2 3 30 30 H 1.09000 * 109.47347 * 302.43088 * 1 2 3 31 31 H 1.09004 * 109.47304 * 62.42797 * 1 2 3 32 32 H 1.08993 * 110.72280 * 271.94286 * 4 2 1 33 33 H 1.09004 * 110.71562 * 35.03526 * 4 2 1 34 34 H 1.08996 * 109.98947 * 218.66708 * 5 4 2 35 35 H 1.09006 * 109.77228 * 97.50078 * 5 4 2 36 36 H 0.97003 * 120.00309 * 359.97438 * 11 9 7 37 37 H 1.09002 * 109.47073 * 60.00220 * 12 11 9 38 38 H 1.08995 * 109.47064 * 299.99902 * 12 11 9 39 39 H 1.09004 * 109.47318 * 299.89698 * 14 13 12 40 40 H 1.08998 * 109.47231 * 59.89859 * 14 13 12 41 41 H 1.09005 * 109.47494 * 179.89963 * 14 13 12 42 42 H 1.09004 * 109.83730 * 52.68606 * 15 13 12 43 43 H 1.08997 * 109.74166 * 292.00129 * 15 13 12 44 44 H 0.97001 * 120.00066 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.68006 * 170.50417 * 25 16 15 46 46 H 1.09002 * 109.68357 * 291.06249 * 25 16 15 47 47 H 1.08999 * 109.51029 * 67.61948 * 26 25 16 48 48 H 1.08995 * 109.51337 * 187.77387 * 26 25 16 49 49 H 1.09003 * 110.36504 * 143.19936 * 28 6 5 50 50 H 1.09004 * 110.36520 * 265.51732 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 1.2020 5 6 3.4657 -1.2797 0.6955 6 7 3.4271 -1.2428 -0.7738 7 6 4.4476 -1.5611 -1.5945 8 8 4.3007 -1.4994 -2.7975 9 6 5.7603 -1.9900 -1.0231 10 8 5.9074 -2.0514 0.1799 11 7 6.7810 -2.3078 -1.8439 12 6 8.0675 -2.7288 -1.2837 13 6 9.0457 -3.0281 -2.4216 14 6 9.2478 -1.7687 -3.2663 15 6 10.3923 -3.4792 -1.8334 16 7 11.2474 -3.9341 -2.9411 17 6 12.5260 -3.4650 -3.0831 18 1 12.7911 -2.4933 -2.6936 19 6 13.4830 -4.2411 -3.7225 20 7 13.2741 -5.5282 -3.9018 21 14 15.0673 -3.4588 -4.3285 22 1 16.0923 -3.5215 -3.2558 23 1 15.5560 -4.1923 -5.5237 24 1 14.8131 -2.0405 -4.6880 25 6 10.6900 -4.9126 -3.8884 26 6 9.3307 -4.3958 -4.3734 27 8 8.5185 -4.0737 -3.2418 28 6 2.0853 -0.8062 -1.2005 29 1 -0.3634 -1.0267 0.0435 30 1 -0.3634 0.5511 0.8674 31 1 -0.3634 0.4757 -0.9110 32 1 2.1921 -0.1707 2.0796 33 1 1.4450 -1.6619 1.4224 34 1 3.6600 -2.2968 1.0358 35 1 4.2424 -0.6089 1.0629 36 1 6.6636 -2.2584 -2.8055 37 1 7.9253 -3.6258 -0.6810 38 1 8.4703 -1.9315 -0.6592 39 1 8.2917 -1.4545 -3.6849 40 1 9.6498 -0.9720 -2.6404 41 1 9.9461 -1.9821 -4.0757 42 1 10.2337 -4.2982 -1.1317 43 1 10.8688 -2.6434 -1.3211 44 1 13.9430 -6.0705 -4.3483 45 1 11.3637 -5.0264 -4.7376 46 1 10.5608 -5.8735 -3.3902 47 1 9.4766 -3.5037 -4.9825 48 1 8.8389 -5.1664 -4.9670 49 1 2.1560 -0.1713 -2.0837 50 1 1.4519 -1.6699 -1.4030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108332254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:14 Heat of formation + Delta-G solvation = -104.130245 kcal Electronic energy + Delta-G solvation = -30449.984277 eV Core-core repulsion = 26284.392160 eV Total energy + Delta-G solvation = -4165.592117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93237 -40.80047 -39.78707 -38.76505 -36.70077 -35.95081 -34.00188 -33.58284 -32.69768 -30.64324 -29.84115 -28.72507 -27.96295 -27.26507 -25.08112 -24.82776 -23.55761 -22.65230 -21.36254 -21.10778 -20.21643 -19.07281 -18.73791 -18.12586 -17.64839 -17.30481 -16.97140 -16.65897 -16.54940 -16.22671 -15.67570 -15.54699 -15.42847 -15.19765 -14.74376 -14.65423 -14.61542 -14.39255 -14.14736 -13.92733 -13.65038 -13.49125 -13.41655 -13.11251 -12.92271 -12.78231 -12.75132 -12.66842 -12.60471 -12.40378 -12.12287 -12.05412 -11.98274 -11.86938 -11.61944 -11.55169 -11.17530 -10.78359 -10.69151 -10.49758 -10.32846 -9.87543 -8.71559 -7.89483 -5.36111 0.28604 1.17627 1.46466 1.48277 1.57487 2.06689 2.37122 2.49932 2.75721 3.22966 3.26131 3.46948 3.57420 3.62524 3.83164 3.91251 3.92838 4.03370 4.27937 4.37316 4.43425 4.48890 4.55522 4.57881 4.59130 4.61068 4.70497 4.75003 4.78524 4.83413 4.86042 4.94769 4.98165 4.98746 5.04757 5.09787 5.14031 5.19412 5.23090 5.31803 5.37555 5.47031 5.56818 5.63202 5.94417 6.17259 6.27816 6.34962 6.57075 6.86901 7.07617 7.76025 8.30226 9.16374 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.002080 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.653114 B =13457.617789 C =13640.608116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.122 4.122 5 C 0.101 3.899 6 N -0.590 5.590 7 C 0.517 3.483 8 O -0.548 6.548 9 C 0.507 3.493 10 O -0.535 6.535 11 N -0.681 5.681 12 C 0.145 3.855 13 C 0.095 3.905 14 C -0.160 4.160 15 C 0.125 3.875 16 N -0.604 5.604 17 C -0.258 4.258 18 H 0.074 0.926 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.146 3.854 26 C 0.050 3.950 27 O -0.387 6.387 28 C 0.099 3.901 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.417 0.583 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.074 0.926 44 H 0.250 0.750 45 H 0.067 0.933 46 H -0.002 1.002 47 H 0.055 0.945 48 H 0.103 0.897 49 H 0.075 0.925 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.132 11.980 8.074 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.020 4.020 6 N -0.324 5.324 7 C 0.300 3.700 8 O -0.427 6.427 9 C 0.287 3.713 10 O -0.413 6.413 11 N -0.333 5.333 12 C 0.022 3.978 13 C 0.054 3.946 14 C -0.218 4.218 15 C -0.002 4.002 16 N -0.328 5.328 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.193 1.193 25 C 0.020 3.980 26 C -0.028 4.028 27 O -0.306 6.306 28 C -0.022 4.022 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.016 0.984 47 H 0.073 0.927 48 H 0.121 0.879 49 H 0.093 0.907 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.078 11.748 8.221 28.888 hybrid contribution 1.681 -0.303 -0.988 1.973 sum -23.397 11.445 7.233 27.032 Atomic orbital electron populations 1.21681 0.91855 1.02879 1.03046 1.22370 0.97501 0.99048 0.92757 0.89303 1.22839 0.93603 1.01035 0.98519 1.22345 0.99807 1.02556 0.77334 1.48417 1.11972 1.63165 1.08796 1.19823 0.84960 0.79194 0.85985 1.90757 1.83231 1.53719 1.14973 1.20040 0.85330 0.79184 0.86727 1.90732 1.83102 1.52851 1.14566 1.45692 1.11355 1.64895 1.11405 1.21398 0.81013 1.01016 0.94393 1.22217 0.93127 0.88157 0.91136 1.22180 1.01984 0.96629 1.00964 1.21652 0.90466 0.97901 0.90141 1.44232 1.11234 1.50128 1.27245 1.19502 0.86262 0.98601 1.34428 0.90881 1.25809 1.00770 0.95219 1.02920 1.70187 1.36239 1.05175 1.46635 0.85261 0.79630 0.78119 0.77320 1.21319 1.22045 1.19314 1.21271 0.92736 0.90069 0.93906 1.23189 0.91915 1.00042 0.87650 1.87833 1.47888 1.55384 1.39519 1.22695 0.80999 0.99293 0.99191 0.91871 0.90723 0.91905 0.87885 0.89229 0.91153 0.90870 0.74589 0.90867 0.88049 0.91492 0.90669 0.92473 0.96409 0.90737 0.94064 0.91468 0.98437 0.92675 0.87893 0.90664 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.29 71.98 0.67 -0.07 16 2 C -0.10 -0.88 3.64 -9.40 -0.03 -0.91 16 3 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -1.08 6.42 31.79 0.20 -0.88 16 5 C 0.10 1.67 5.49 86.73 0.48 2.15 16 6 N -0.59 -12.21 3.33 -813.35 -2.70 -14.91 16 7 C 0.52 13.79 7.91 87.27 0.69 14.48 16 8 O -0.55 -16.99 16.73 -3.24 -0.05 -17.04 16 9 C 0.51 14.06 7.86 87.27 0.69 14.75 16 10 O -0.53 -15.85 14.12 -3.25 -0.05 -15.90 16 11 N -0.68 -18.71 5.14 -464.40 -2.39 -21.10 16 12 C 0.15 4.15 4.82 86.38 0.42 4.56 16 13 C 0.09 3.15 0.76 -10.55 -0.01 3.14 16 14 C -0.16 -4.89 7.93 71.98 0.57 -4.32 16 15 C 0.12 5.04 5.44 86.50 0.47 5.51 16 16 N -0.60 -29.57 2.56 -696.72 -1.78 -31.36 16 17 C -0.26 -13.72 9.65 84.04 0.81 -12.91 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 19 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 20 N -0.94 -54.69 11.13 21.65 0.24 -54.45 16 21 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.15 7.01 5.44 86.35 0.47 7.48 16 26 C 0.05 1.88 6.60 72.08 0.48 2.35 16 27 O -0.39 -14.16 9.97 -148.98 -1.49 -15.64 16 28 C 0.10 1.50 6.37 86.86 0.55 2.05 16 29 H 0.06 0.32 8.11 -2.39 -0.02 0.31 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 0.63 8.01 -2.39 -0.02 0.61 16 34 H 0.07 1.30 7.71 -2.39 -0.02 1.28 16 35 H 0.07 1.32 7.57 -2.38 -0.02 1.30 16 36 H 0.42 11.49 6.68 -92.71 -0.62 10.87 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.07 1.80 6.88 -2.38 -0.02 1.78 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.03 6.12 -2.38 -0.01 2.02 16 42 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 44 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.07 3.58 6.15 -2.39 -0.01 3.57 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.06 2.02 6.25 -2.39 -0.01 2.00 16 48 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 49 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 50 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 Total: -1.00 -67.48 391.59 1.00 -66.48 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.32 Total: 22.90 kcal Atomic # 6 Polarization: 28.10 SS G_CDS: 6.87 Total: 34.97 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.64 Total: -121.82 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.59 Total: -48.58 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.48 1.00 -66.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108332254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.649 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds