Wall clock time and date at job start Tue Mar 31 2020 23:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21273 * 120.00327 * 2 1 4 4 N 1.34779 * 119.99443 * 179.97438 * 2 1 3 5 5 C 1.47148 * 120.98911 * 0.02562 * 4 2 1 6 6 C 1.53304 * 108.41183 * 129.46738 * 5 4 2 7 7 H 1.09000 * 109.51111 * 292.36754 * 6 5 4 8 8 C 1.53002 * 109.51163 * 172.26566 * 6 5 4 9 9 O 1.42974 * 109.21279 * 52.34468 * 6 5 4 10 10 C 1.42876 * 114.15966 * 297.53391 * 9 6 5 11 11 C 1.53017 * 109.58331 * 182.49822 * 10 9 6 12 12 C 1.53065 * 109.27134 * 62.52591 * 11 10 9 13 13 N 1.46844 * 109.50986 * 59.06205 * 12 11 10 14 14 C 1.46907 * 110.99594 * 174.12572 * 13 12 11 15 15 C 1.50698 * 109.47217 * 190.65242 * 14 13 12 16 16 O 1.21303 * 119.99619 * 6.26857 * 15 14 13 17 17 N 1.34776 * 120.00152 * 186.26866 * 15 14 13 18 18 C 1.37097 * 119.99844 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00140 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99959 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00142 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47076 * 60.00652 * 22 20 18 24 24 H 1.48499 * 109.47008 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47169 * 300.00337 * 22 20 18 26 26 C 1.46844 * 111.24047 * 298.24990 * 13 12 11 27 27 C 1.53038 * 109.56058 * 302.42865 * 10 9 6 28 28 C 1.47179 * 120.98308 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47171 * 240.00374 * 1 2 3 30 30 H 1.09005 * 109.46779 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47033 * 119.99772 * 1 2 3 32 32 H 1.08994 * 109.67550 * 9.73460 * 5 4 2 33 33 H 1.08998 * 109.70402 * 249.20748 * 5 4 2 34 34 H 1.08997 * 109.47489 * 59.99780 * 8 6 5 35 35 H 1.08999 * 109.46845 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46749 * 299.99393 * 8 6 5 37 37 H 1.08999 * 109.50807 * 182.46794 * 11 10 9 38 38 H 1.09005 * 109.50770 * 302.58907 * 11 10 9 39 39 H 1.08991 * 109.46095 * 299.05067 * 12 11 10 40 40 H 1.08995 * 109.46242 * 179.06937 * 12 11 10 41 41 H 1.09003 * 109.46746 * 310.65084 * 14 13 12 42 42 H 1.09001 * 109.47048 * 70.65273 * 14 13 12 43 43 H 0.96997 * 119.99546 * 0.02562 * 17 15 14 44 44 H 0.96999 * 120.00092 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.46746 * 301.75246 * 26 13 12 46 46 H 1.09002 * 109.46617 * 181.77477 * 26 13 12 47 47 H 1.08999 * 109.50400 * 57.41843 * 27 10 9 48 48 H 1.09006 * 109.50050 * 177.49053 * 27 10 9 49 49 H 1.08996 * 109.68406 * 350.10762 * 28 4 2 50 50 H 1.08999 * 109.68343 * 110.62950 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4671 -2.4541 0.0005 6 6 2.0412 -3.3262 -1.1220 7 1 1.7849 -2.8914 -2.0881 8 6 1.4548 -4.7360 -1.0244 9 8 3.4632 -3.3900 -0.9877 10 6 4.1200 -2.1279 -1.1180 11 6 5.6342 -2.3252 -1.0195 12 6 6.1048 -3.2090 -2.1773 13 7 5.7556 -2.5723 -3.4536 14 6 6.3139 -3.3228 -4.5864 15 6 6.1644 -2.5127 -5.8483 16 8 5.7490 -1.3744 -5.7925 17 7 6.4921 -3.0530 -7.0387 18 6 6.3555 -2.3162 -8.1868 19 1 5.9857 -1.3027 -8.1372 20 6 6.6939 -2.8730 -9.4140 21 7 7.1443 -4.1060 -9.4743 22 14 6.5085 -1.8688 -10.9782 23 1 7.3571 -0.6534 -10.8896 24 1 6.9327 -2.6853 -12.1438 25 1 5.0879 -1.4697 -11.1447 26 6 4.3017 -2.4173 -3.5905 27 6 3.7773 -1.5097 -2.4753 28 6 3.6524 -1.1927 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 0.4046 -2.2844 -0.1734 33 1 1.6070 -2.9519 0.9600 34 1 0.3704 -4.6862 -1.1221 35 1 1.8631 -5.3554 -1.8230 36 1 1.7131 -5.1709 -0.0588 37 1 6.1318 -1.3570 -1.0751 38 1 5.8778 -2.8063 -0.0722 39 1 5.6189 -4.1823 -2.1119 40 1 7.1856 -3.3380 -2.1196 41 1 7.3703 -3.5214 -4.4052 42 1 5.7801 -4.2669 -4.6953 43 1 6.8239 -3.9634 -7.0832 44 1 7.3802 -4.4949 -10.3310 45 1 3.8239 -3.3944 -3.5185 46 1 4.0735 -1.9720 -4.5588 47 1 2.6959 -1.4085 -2.5666 48 1 4.2427 -0.5272 -2.5556 49 1 4.0370 -0.1882 -0.1753 50 1 4.0129 -1.5603 0.9618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111532353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:37 Heat of formation + Delta-G solvation = -103.507993 kcal Electronic energy + Delta-G solvation = -31387.206608 eV Core-core repulsion = 27221.641473 eV Total energy + Delta-G solvation = -4165.565134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12536 -39.29520 -38.35179 -36.93660 -34.94826 -34.18126 -33.65662 -31.31860 -31.03937 -30.78130 -30.47741 -27.99714 -26.79208 -25.66097 -24.05387 -23.42446 -22.30154 -21.37470 -19.59502 -19.33166 -19.12583 -17.82492 -17.39645 -16.67980 -16.34873 -16.12772 -15.80872 -15.41258 -15.04955 -14.95372 -14.62234 -14.30324 -14.10550 -13.94979 -13.65139 -13.61310 -13.55847 -13.14986 -12.86266 -12.76102 -12.46865 -12.38024 -12.32608 -12.18095 -11.95700 -11.92968 -11.75991 -11.46582 -11.22224 -11.14336 -11.01981 -10.94263 -10.63391 -10.43541 -10.41976 -10.18275 -9.98874 -9.90936 -9.42733 -8.75717 -8.35928 -7.93207 -7.77216 -6.38635 -3.79255 2.35493 2.61222 3.21999 3.27260 3.31865 3.38578 3.95694 4.05158 4.21223 4.28086 4.32385 4.50786 4.65565 4.67551 4.77524 4.82890 4.87692 5.00009 5.03197 5.11846 5.17272 5.25126 5.27731 5.33562 5.40674 5.44965 5.50911 5.55976 5.60491 5.62017 5.71453 5.76227 5.80628 5.87086 5.89013 5.98779 6.02366 6.11661 6.19016 6.31667 6.37855 6.47413 7.06268 7.07732 7.36796 7.49278 7.57939 7.88084 8.10014 8.66004 9.21652 9.58641 10.11099 10.79215 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002630 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.448438 B =10642.757885 C =11068.067956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.513 3.487 3 O -0.541 6.541 4 N -0.616 5.616 5 C 0.079 3.921 6 C 0.068 3.932 7 H 0.069 0.931 8 C -0.142 4.142 9 O -0.362 6.362 10 C 0.107 3.893 11 C -0.096 4.096 12 C 0.059 3.941 13 N -0.515 5.515 14 C 0.048 3.952 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.064 3.936 27 C -0.130 4.130 28 C 0.091 3.909 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.026 0.974 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 -3.189 21.537 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.302 3.698 3 O -0.418 6.418 4 N -0.350 5.350 5 C -0.044 4.044 6 C 0.009 3.991 7 H 0.087 0.913 8 C -0.200 4.200 9 O -0.281 6.281 10 C 0.067 3.933 11 C -0.134 4.134 12 C -0.069 4.069 13 N -0.239 5.239 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.064 4.064 27 C -0.168 4.168 28 C -0.032 4.032 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.634 -1.651 21.438 24.447 hybrid contribution -0.377 -0.872 -0.904 1.312 sum -12.010 -2.523 20.534 23.922 Atomic orbital electron populations 1.21946 0.91723 1.05607 1.04050 1.20825 0.90638 0.82885 0.75486 1.90734 1.70693 1.30844 1.49554 1.48171 1.06956 1.05928 1.73946 1.22521 0.97298 0.84198 1.00384 1.22469 0.82408 0.96685 0.97517 0.91310 1.21718 1.00303 0.94528 1.03457 1.87985 1.17702 1.29571 1.92886 1.21872 0.93641 0.83654 0.94112 1.21526 0.91292 1.01962 0.98624 1.21994 1.00323 0.95575 0.88980 1.61502 1.12110 1.49869 1.00445 1.21825 1.00589 0.94789 0.91159 1.19788 0.84679 0.88380 0.84233 1.90510 1.50243 1.18872 1.86358 1.41875 1.57719 1.15627 1.05092 1.19642 1.40971 0.98757 0.83390 0.88025 1.25244 0.97098 0.96184 0.99424 1.69606 1.44442 1.13527 1.26913 0.85932 0.78864 0.79213 0.80295 1.19897 1.21011 1.19967 1.22034 0.86883 0.97449 1.00046 1.22057 1.00489 1.00808 0.93489 1.22303 0.79537 1.02361 0.98990 0.89449 0.88843 0.89315 0.88847 0.90466 0.90935 0.91227 0.91648 0.89320 0.90750 0.94311 0.90727 0.89314 0.93687 0.77535 0.91880 0.95599 0.88659 0.91866 0.89801 0.87933 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 8.69 36.01 0.31 -0.84 16 2 C 0.51 5.73 7.82 -10.98 -0.09 5.65 16 3 O -0.54 -8.48 16.56 5.56 0.09 -8.39 16 4 N -0.62 -6.15 2.59 -172.34 -0.45 -6.60 16 5 C 0.08 0.57 5.83 -3.53 -0.02 0.55 16 6 C 0.07 0.60 3.02 -26.57 -0.08 0.52 16 7 H 0.07 0.69 6.21 -51.93 -0.32 0.37 16 8 C -0.14 -0.96 9.57 37.16 0.36 -0.61 16 9 O -0.36 -4.11 8.75 -35.23 -0.31 -4.42 16 10 C 0.11 1.27 0.68 -90.51 -0.06 1.20 16 11 C -0.10 -1.11 5.11 -26.69 -0.14 -1.24 16 12 C 0.06 0.79 5.33 -3.82 -0.02 0.77 16 13 N -0.51 -8.78 4.34 -236.09 -1.03 -9.81 16 14 C 0.05 0.88 5.45 -4.97 -0.03 0.85 16 15 C 0.44 10.61 7.31 -10.99 -0.08 10.53 16 16 O -0.58 -15.73 14.29 5.54 0.08 -15.65 16 17 N -0.57 -14.51 5.29 -10.96 -0.06 -14.56 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 22 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.06 1.07 4.99 -3.83 -0.02 1.05 16 27 C -0.13 -1.88 4.40 -26.69 -0.12 -1.99 16 28 C 0.09 1.00 5.30 -3.59 -0.02 0.98 16 29 H 0.09 0.38 8.01 -51.93 -0.42 -0.04 16 30 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.09 0.43 6.05 -51.93 -0.31 0.12 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.52 7.77 -51.93 -0.40 0.12 16 40 H 0.07 0.91 8.01 -51.93 -0.42 0.50 16 41 H 0.09 1.47 7.97 -51.93 -0.41 1.06 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.03 0.42 7.77 -51.93 -0.40 0.02 16 46 H 0.10 1.96 6.06 -51.93 -0.31 1.65 16 47 H 0.06 0.87 6.06 -51.93 -0.31 0.56 16 48 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.10 1.31 7.08 -51.93 -0.37 0.94 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -34.30 387.80 -8.50 -42.80 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -8.14 Total: 9.20 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.24 Total: 9.39 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.81 Total: -55.02 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.14 Total: -28.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.30 -8.50 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111532353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.707 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds