Wall clock time and date at job start Tue Mar 31 2020 23:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21273 * 120.00327 * 2 1 4 4 N 1.34779 * 119.99443 * 179.97438 * 2 1 3 5 5 C 1.47148 * 120.98911 * 0.02562 * 4 2 1 6 6 C 1.53304 * 108.41183 * 129.46738 * 5 4 2 7 7 H 1.09000 * 109.51111 * 292.36754 * 6 5 4 8 8 C 1.53002 * 109.51163 * 172.26566 * 6 5 4 9 9 O 1.42974 * 109.21279 * 52.34468 * 6 5 4 10 10 C 1.42876 * 114.15966 * 297.53391 * 9 6 5 11 11 C 1.53017 * 109.58331 * 182.49822 * 10 9 6 12 12 C 1.53065 * 109.27134 * 62.52591 * 11 10 9 13 13 N 1.46844 * 109.50986 * 59.06205 * 12 11 10 14 14 C 1.46907 * 110.99594 * 174.12572 * 13 12 11 15 15 C 1.50698 * 109.47217 * 190.65242 * 14 13 12 16 16 O 1.21303 * 119.99619 * 6.26857 * 15 14 13 17 17 N 1.34776 * 120.00152 * 186.26866 * 15 14 13 18 18 C 1.37097 * 119.99844 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00140 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99959 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00142 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47076 * 60.00652 * 22 20 18 24 24 H 1.48499 * 109.47008 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47169 * 300.00337 * 22 20 18 26 26 C 1.46844 * 111.24047 * 298.24990 * 13 12 11 27 27 C 1.53038 * 109.56058 * 302.42865 * 10 9 6 28 28 C 1.47179 * 120.98308 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47171 * 240.00374 * 1 2 3 30 30 H 1.09005 * 109.46779 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47033 * 119.99772 * 1 2 3 32 32 H 1.08994 * 109.67550 * 9.73460 * 5 4 2 33 33 H 1.08998 * 109.70402 * 249.20748 * 5 4 2 34 34 H 1.08997 * 109.47489 * 59.99780 * 8 6 5 35 35 H 1.08999 * 109.46845 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46749 * 299.99393 * 8 6 5 37 37 H 1.08999 * 109.50807 * 182.46794 * 11 10 9 38 38 H 1.09005 * 109.50770 * 302.58907 * 11 10 9 39 39 H 1.08991 * 109.46095 * 299.05067 * 12 11 10 40 40 H 1.08995 * 109.46242 * 179.06937 * 12 11 10 41 41 H 1.09003 * 109.46746 * 310.65084 * 14 13 12 42 42 H 1.09001 * 109.47048 * 70.65273 * 14 13 12 43 43 H 0.96997 * 119.99546 * 0.02562 * 17 15 14 44 44 H 0.96999 * 120.00092 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.46746 * 301.75246 * 26 13 12 46 46 H 1.09002 * 109.46617 * 181.77477 * 26 13 12 47 47 H 1.08999 * 109.50400 * 57.41843 * 27 10 9 48 48 H 1.09006 * 109.50050 * 177.49053 * 27 10 9 49 49 H 1.08996 * 109.68406 * 350.10762 * 28 4 2 50 50 H 1.08999 * 109.68343 * 110.62950 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4671 -2.4541 0.0005 6 6 2.0412 -3.3262 -1.1220 7 1 1.7849 -2.8914 -2.0881 8 6 1.4548 -4.7360 -1.0244 9 8 3.4632 -3.3900 -0.9877 10 6 4.1200 -2.1279 -1.1180 11 6 5.6342 -2.3252 -1.0195 12 6 6.1048 -3.2090 -2.1773 13 7 5.7556 -2.5723 -3.4536 14 6 6.3139 -3.3228 -4.5864 15 6 6.1644 -2.5127 -5.8483 16 8 5.7490 -1.3744 -5.7925 17 7 6.4921 -3.0530 -7.0387 18 6 6.3555 -2.3162 -8.1868 19 1 5.9857 -1.3027 -8.1372 20 6 6.6939 -2.8730 -9.4140 21 7 7.1443 -4.1060 -9.4743 22 14 6.5085 -1.8688 -10.9782 23 1 7.3571 -0.6534 -10.8896 24 1 6.9327 -2.6853 -12.1438 25 1 5.0879 -1.4697 -11.1447 26 6 4.3017 -2.4173 -3.5905 27 6 3.7773 -1.5097 -2.4753 28 6 3.6524 -1.1927 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 0.4046 -2.2844 -0.1734 33 1 1.6070 -2.9519 0.9600 34 1 0.3704 -4.6862 -1.1221 35 1 1.8631 -5.3554 -1.8230 36 1 1.7131 -5.1709 -0.0588 37 1 6.1318 -1.3570 -1.0751 38 1 5.8778 -2.8063 -0.0722 39 1 5.6189 -4.1823 -2.1119 40 1 7.1856 -3.3380 -2.1196 41 1 7.3703 -3.5214 -4.4052 42 1 5.7801 -4.2669 -4.6953 43 1 6.8239 -3.9634 -7.0832 44 1 7.3802 -4.4949 -10.3310 45 1 3.8239 -3.3944 -3.5185 46 1 4.0735 -1.9720 -4.5588 47 1 2.6959 -1.4085 -2.5666 48 1 4.2427 -0.5272 -2.5556 49 1 4.0370 -0.1882 -0.1753 50 1 4.0129 -1.5603 0.9618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111532353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:37 Heat of formation + Delta-G solvation = -129.173066 kcal Electronic energy + Delta-G solvation = -31388.319529 eV Core-core repulsion = 27221.641473 eV Total energy + Delta-G solvation = -4166.678056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02981 -40.52438 -39.83421 -38.22196 -36.00161 -35.78340 -34.92589 -33.28617 -32.09953 -31.84235 -31.27950 -29.15497 -27.68576 -26.95739 -25.67111 -24.53560 -23.31542 -22.30329 -21.02794 -20.58514 -20.13336 -19.88318 -18.19039 -17.85002 -17.43403 -17.30585 -16.93385 -16.59575 -16.35012 -16.28784 -16.01753 -15.75508 -15.29453 -15.16639 -15.09260 -14.76502 -14.66766 -14.03590 -13.90788 -13.61429 -13.50260 -13.48023 -13.26421 -13.12690 -13.06308 -12.92900 -12.87507 -12.81122 -12.69348 -12.44131 -12.43790 -12.22197 -12.13391 -11.95852 -11.70559 -11.45060 -11.44031 -10.89539 -10.85199 -10.29279 -10.00698 -9.57363 -9.16987 -8.46900 -5.95629 1.38518 1.40080 1.51116 1.53478 1.87282 2.05503 2.27689 2.56411 2.79204 3.19700 3.36076 3.45095 3.59182 3.64607 3.76184 3.85709 4.04198 4.15612 4.17619 4.23374 4.30355 4.35005 4.36901 4.45023 4.47376 4.51513 4.54362 4.57458 4.61162 4.63416 4.71358 4.76491 4.81530 4.88618 4.96047 4.98999 5.03167 5.06973 5.11652 5.23456 5.32619 5.35451 5.39923 5.89278 6.08531 6.21823 6.25298 6.30865 6.60913 7.06659 7.12775 7.56395 8.12948 8.70450 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002630 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.448438 B =10642.757885 C =11068.067956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.502 3.498 3 O -0.599 6.599 4 N -0.616 5.616 5 C 0.080 3.920 6 C 0.059 3.941 7 H 0.051 0.949 8 C -0.136 4.136 9 O -0.369 6.369 10 C 0.118 3.882 11 C -0.095 4.095 12 C 0.061 3.939 13 N -0.533 5.533 14 C 0.060 3.940 15 C 0.441 3.559 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.073 3.927 27 C -0.121 4.121 28 C 0.093 3.907 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.033 0.967 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.152 -5.062 23.167 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.293 3.707 3 O -0.480 6.480 4 N -0.349 5.349 5 C -0.041 4.041 6 C 0.001 3.999 7 H 0.069 0.931 8 C -0.193 4.193 9 O -0.289 6.289 10 C 0.078 3.922 11 C -0.133 4.133 12 C -0.066 4.066 13 N -0.259 5.259 14 C -0.072 4.072 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.198 1.198 26 C -0.055 4.055 27 C -0.159 4.159 28 C -0.030 4.030 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.096 0.904 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.764 -3.588 23.087 26.624 hybrid contribution -0.053 -0.324 -1.393 1.431 sum -12.818 -3.912 21.694 25.500 Atomic orbital electron populations 1.21982 0.87935 1.06215 1.06415 1.21722 0.92503 0.82241 0.74221 1.90708 1.72130 1.32884 1.52306 1.48320 1.06620 1.06945 1.72977 1.22746 0.98558 0.82331 1.00497 1.22702 0.81266 0.98466 0.97479 0.93097 1.21716 1.01655 0.92618 1.03361 1.87976 1.19302 1.28824 1.92781 1.21662 0.94131 0.84067 0.92354 1.21561 0.90898 1.01635 0.99202 1.22100 1.01432 0.95790 0.87282 1.61478 1.11945 1.50835 1.01616 1.21708 1.02437 0.94190 0.88822 1.20802 0.82657 0.88280 0.85433 1.90486 1.51488 1.20992 1.87182 1.41933 1.58356 1.15692 1.05247 1.19601 1.43042 0.98470 0.85166 0.90530 1.26017 0.96101 0.97244 1.01820 1.69666 1.44151 1.14344 1.28002 0.85011 0.78773 0.77893 0.76794 1.19808 1.19308 1.19754 1.21813 0.87367 0.97714 0.98568 1.21930 1.00156 0.99015 0.94811 1.22173 0.80711 1.00787 0.99374 0.86259 0.89325 0.87369 0.85687 0.88569 0.88384 0.92784 0.90683 0.90014 0.87821 0.93739 0.89122 0.86896 0.91948 0.77046 0.91275 0.94925 0.93281 0.91695 0.92659 0.90409 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.69 71.24 0.62 -1.19 16 2 C 0.50 10.87 7.82 87.66 0.69 11.55 16 3 O -0.60 -19.48 16.56 -3.01 -0.05 -19.53 16 4 N -0.62 -11.39 2.59 -817.56 -2.12 -13.51 16 5 C 0.08 0.88 5.83 86.36 0.50 1.39 16 6 C 0.06 0.91 3.02 30.70 0.09 1.01 16 7 H 0.05 0.97 6.21 -2.39 -0.01 0.96 16 8 C -0.14 -1.43 9.57 71.98 0.69 -0.75 16 9 O -0.37 -7.66 8.75 -148.98 -1.30 -8.96 16 10 C 0.12 2.70 0.68 -10.72 -0.01 2.70 16 11 C -0.10 -2.06 5.11 30.62 0.16 -1.90 16 12 C 0.06 1.53 5.33 86.34 0.46 1.99 16 13 N -0.53 -18.28 4.34 -900.86 -3.91 -22.19 16 14 C 0.06 2.17 5.45 85.56 0.47 2.64 16 15 C 0.44 21.79 7.31 87.66 0.64 22.44 16 16 O -0.62 -35.39 14.29 -3.10 -0.04 -35.43 16 17 N -0.57 -30.32 5.29 -306.98 -1.62 -31.94 16 18 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16 22 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.07 2.57 4.99 86.33 0.43 3.00 16 27 C -0.12 -3.63 4.40 30.62 0.13 -3.49 16 28 C 0.09 1.99 5.30 86.30 0.46 2.44 16 29 H 0.12 0.55 8.01 -2.39 -0.02 0.53 16 30 H 0.09 1.09 8.12 -2.38 -0.02 1.07 16 31 H 0.11 0.77 7.66 -2.39 -0.02 0.75 16 32 H 0.13 0.59 6.05 -2.39 -0.01 0.58 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.04 1.09 7.77 -2.39 -0.02 1.07 16 40 H 0.09 1.99 8.01 -2.39 -0.02 1.97 16 41 H 0.11 3.58 7.97 -2.39 -0.02 3.57 16 42 H 0.06 2.07 8.12 -2.39 -0.02 2.06 16 43 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 44 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.03 1.08 7.77 -2.39 -0.02 1.06 16 46 H 0.05 2.16 6.06 -2.39 -0.01 2.15 16 47 H 0.06 1.87 6.06 -2.39 -0.01 1.86 16 48 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 49 H 0.08 2.08 7.08 -2.39 -0.02 2.06 16 50 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.00 387.80 0.08 -78.92 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.22 Total: 33.90 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.61 Total: 23.08 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -7.37 Total: -117.73 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -1.40 Total: -63.92 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -79.00 0.08 -78.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111532353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.255 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds